Wall clock time and date at job start Tue Mar 31 2020 07:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47007 * 2 1 4 4 C 1.53001 * 109.47631 * 240.00089 * 2 1 3 5 5 O 1.45198 * 109.47260 * 119.99763 * 2 1 3 6 6 C 1.34239 * 116.99699 * 60.00200 * 5 2 1 7 7 O 1.20821 * 120.00101 * 0.02562 * 6 5 2 8 8 C 1.50694 * 119.99648 * 180.02562 * 6 5 2 9 9 C 1.53519 * 114.16764 * 179.97438 * 8 6 5 10 10 N 1.47478 * 87.93153 * 139.67014 * 9 8 6 11 11 C 1.46905 * 111.00309 * 221.29913 * 10 9 8 12 12 C 1.52997 * 109.47325 * 170.00109 * 11 10 9 13 13 H 1.08996 * 109.46952 * 54.99956 * 12 11 10 14 14 C 1.47206 * 109.47168 * 294.99733 * 12 11 10 15 15 N 6.58598 * 136.96454 * 157.40569 * 2 1 3 16 16 C 1.53002 * 109.46817 * 175.00015 * 12 11 10 17 17 C 1.50703 * 109.46865 * 184.99692 * 16 12 11 18 18 H 1.08006 * 120.00033 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00279 * 179.97438 * 17 16 12 20 20 N 1.31507 * 120.00530 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99615 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47222 * 90.00111 * 21 19 17 23 23 H 1.48502 * 109.47151 * 210.00363 * 21 19 17 24 24 H 1.48504 * 109.47412 * 330.00086 * 21 19 17 25 25 C 1.47479 * 87.83742 * 332.99091 * 10 9 8 26 26 H 1.08990 * 109.47027 * 300.00229 * 1 2 3 27 27 H 1.09005 * 109.46758 * 60.00528 * 1 2 3 28 28 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46664 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47168 * 299.99253 * 3 2 1 31 31 H 1.08992 * 109.46895 * 59.99992 * 3 2 1 32 32 H 1.09002 * 109.46758 * 300.00441 * 4 2 1 33 33 H 1.09005 * 109.47029 * 59.99854 * 4 2 1 34 34 H 1.08994 * 109.47184 * 180.02562 * 4 2 1 35 35 H 1.09002 * 113.26268 * 47.04719 * 8 6 5 36 36 H 1.08999 * 113.47465 * 24.90695 * 9 8 6 37 37 H 1.08992 * 113.53211 * 254.44383 * 9 8 6 38 38 H 1.08998 * 109.46948 * 50.00006 * 11 10 9 39 39 H 1.09000 * 109.46862 * 290.00324 * 11 10 9 40 40 H 1.08997 * 109.47047 * 304.99674 * 16 12 11 41 41 H 1.08997 * 109.47298 * 65.00333 * 16 12 11 42 42 H 0.96994 * 120.00578 * 179.97438 * 20 19 17 43 43 H 1.09005 * 113.47669 * 141.77612 * 25 10 9 44 44 H 1.08998 * 113.48040 * 272.24021 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1173 -2.7433 2.5441 9 6 1.6269 -4.1975 2.5838 10 7 2.9630 -4.5785 3.0785 11 6 3.4260 -5.8190 2.4422 12 6 4.8995 -6.0485 2.7845 13 1 5.0263 -6.0418 3.8671 14 6 5.7144 -4.9774 2.1883 15 7 6.3439 -4.1496 1.7268 16 6 5.3478 -7.4010 2.2269 17 6 6.7610 -7.6826 2.6681 18 1 7.2867 -6.9686 3.2849 19 6 7.3826 -8.8522 2.2852 20 7 8.6157 -9.0983 2.6705 21 14 6.4733 -10.0874 1.2190 22 1 6.7182 -9.7802 -0.2130 23 1 6.9612 -11.4568 1.5221 24 1 5.0174 -10.0072 1.5005 25 6 3.4977 -3.3948 2.3800 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2074 -2.1393 34 1 3.1301 -0.7216 -1.2489 35 1 1.9843 -2.2020 3.4808 36 1 1.3959 -4.6049 1.5995 37 1 0.8307 -4.3686 3.3082 38 1 3.3126 -5.7371 1.3613 39 1 2.8332 -6.6577 2.8072 40 1 4.6879 -8.1844 2.5995 41 1 5.3051 -7.3772 1.1380 42 1 9.0529 -9.9212 2.4015 43 1 4.2870 -2.8845 2.9320 44 1 3.7660 -3.5878 1.3413 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453034879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:25 Heat of formation + Delta-G solvation = -31.105895 kcal Electronic energy + Delta-G solvation = -23857.893655 eV Core-core repulsion = 20390.651452 eV Total energy + Delta-G solvation = -3467.242203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47382 -39.99219 -37.19913 -36.34279 -34.35236 -33.99814 -32.34538 -29.97553 -27.72329 -27.68991 -26.93073 -26.07054 -24.21438 -22.05939 -21.48559 -20.34098 -19.60260 -17.81995 -16.95854 -16.89155 -16.59676 -16.41208 -15.73478 -15.14171 -14.85436 -14.42773 -14.35624 -13.93838 -13.46650 -13.27179 -13.17344 -12.83690 -12.72024 -12.62874 -12.46666 -12.34951 -12.23254 -12.20386 -12.15310 -11.77381 -11.53639 -11.44344 -11.36367 -11.12620 -10.84764 -10.74330 -10.65101 -10.35767 -10.18728 -9.97646 -9.74723 -9.35179 -9.07498 -8.63367 -6.12268 -4.13230 1.96392 2.39920 3.25699 3.33365 3.33768 3.46981 3.51428 3.80491 4.05554 4.36725 4.37393 4.44281 4.45829 4.59891 4.64721 4.75581 4.91998 4.98711 5.16441 5.22321 5.22893 5.32525 5.37291 5.40241 5.44379 5.49212 5.52704 5.54633 5.61867 5.69499 5.75556 5.88325 5.93082 5.99312 6.10775 6.15807 6.29751 6.30407 6.84664 6.92081 7.09106 7.61024 7.61264 8.30006 8.40205 8.90990 9.47359 11.00811 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.003120 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.407620 B = 8972.421599 C = 9133.093510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.115 3.885 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.346 6.346 6 C 0.478 3.522 7 O -0.502 6.502 8 C -0.122 4.122 9 C 0.020 3.980 10 N -0.465 5.465 11 C 0.025 3.975 12 C 0.019 3.981 13 H 0.117 0.883 14 C 0.239 3.761 15 N -0.466 5.466 16 C -0.004 4.004 17 C -0.528 4.528 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.262 1.262 25 C 0.017 3.983 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.136 0.864 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.050 0.950 39 H 0.101 0.899 40 H 0.040 0.960 41 H 0.019 0.981 42 H 0.265 0.735 43 H 0.099 0.901 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.106 16.417 -2.949 25.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.079 3.921 3 C -0.198 4.198 4 C -0.242 4.242 5 O -0.264 6.264 6 C 0.320 3.680 7 O -0.390 6.390 8 C -0.142 4.142 9 C -0.109 4.109 10 N -0.187 5.187 11 C -0.105 4.105 12 C -0.002 4.002 13 H 0.135 0.865 14 C -0.078 4.078 15 N -0.143 5.143 16 C -0.043 4.043 17 C -0.566 4.566 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.187 1.187 25 C -0.112 4.112 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.104 0.896 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.119 0.881 40 H 0.058 0.942 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.075 17.262 -3.217 25.199 hybrid contribution -0.548 -1.021 -1.416 1.830 sum -18.623 16.240 -4.633 25.140 Atomic orbital electron populations 1.22482 0.94014 1.04715 1.02691 1.22209 0.94353 0.92388 0.83157 1.21853 1.02466 0.92521 1.02974 1.22499 1.01993 1.03088 0.96572 1.86582 1.69605 1.25243 1.44937 1.23369 0.76901 0.80513 0.87183 1.90568 1.35347 1.69945 1.43142 1.22772 0.99781 0.95377 0.96224 1.23794 0.94613 0.90794 1.01659 1.69052 1.03381 1.01443 1.44818 1.22872 0.95978 0.93862 0.97767 1.19005 0.88621 0.90962 1.01659 0.86478 1.29151 0.93043 0.92791 0.92819 1.81130 1.09746 1.13171 1.10271 1.19645 0.98460 0.89826 0.96396 1.21017 0.96463 1.05601 1.33547 0.90756 1.24988 0.94674 0.97875 0.95554 1.69897 1.12228 1.25827 1.45494 0.86820 0.80790 0.80849 0.81101 1.20308 1.21205 1.18666 1.23858 0.95227 0.92459 0.99679 0.91995 0.91070 0.89800 0.91313 0.90373 0.91454 0.89835 0.91033 0.91802 0.84623 0.89563 0.88375 0.93202 0.88050 0.94205 0.96286 0.92529 0.88298 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.37 37.16 0.31 -1.27 16 2 C 0.11 1.11 1.13 -90.62 -0.10 1.01 16 3 C -0.14 -1.04 8.85 37.16 0.33 -0.71 16 4 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 5 O -0.35 -4.01 9.89 -39.28 -0.39 -4.40 16 6 C 0.48 5.69 6.83 36.00 0.25 5.94 16 7 O -0.50 -6.68 11.44 -18.75 -0.21 -6.90 16 8 C -0.12 -1.30 4.59 -91.24 -0.42 -1.72 16 9 C 0.02 0.21 7.06 -7.54 -0.05 0.16 16 10 N -0.46 -5.86 6.41 -244.63 -1.57 -7.43 16 11 C 0.02 0.34 4.50 -3.82 -0.02 0.32 16 12 C 0.02 0.34 2.42 -93.40 -0.23 0.11 16 13 H 0.12 2.01 8.14 -51.93 -0.42 1.59 16 14 C 0.24 4.72 10.97 -20.70 -0.23 4.49 16 15 N -0.47 -9.95 18.21 42.22 0.77 -9.18 16 16 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 17 C -0.53 -14.18 9.15 -34.44 -0.32 -14.50 16 18 H 0.07 2.19 7.84 -52.48 -0.41 1.78 16 19 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 20 N -0.90 -27.03 13.96 55.43 0.77 -26.26 16 21 Si 0.88 20.61 27.47 -169.99 -4.67 15.94 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.26 -5.67 6.54 56.52 0.37 -5.31 16 25 C 0.02 0.22 4.99 -7.55 -0.04 0.18 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.88 5.89 -51.93 -0.31 0.58 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 1.00 5.89 -51.93 -0.31 0.69 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.14 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.09 0.97 7.08 -51.93 -0.37 0.60 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.68 7.56 -51.93 -0.39 0.29 16 39 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.04 0.80 7.20 -51.93 -0.37 0.42 16 41 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.10 1.37 7.82 -51.93 -0.41 0.96 16 44 H 0.08 1.11 7.03 -51.93 -0.36 0.74 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -31.44 356.08 -7.47 -38.91 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.14 Total: -0.25 kcal Atomic # 6 Polarization: -5.41 SS G_CDS: -0.40 Total: -5.80 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.03 Total: -42.87 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.60 Total: -11.30 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.94 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.44 -7.47 -38.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453034879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.802 kcal (2) G-P(sol) polarization free energy of solvation -31.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds