Wall clock time and date at job start Tue Mar 31 2020 07:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47007 * 2 1 4 4 C 1.53001 * 109.47631 * 240.00089 * 2 1 3 5 5 O 1.45198 * 109.47260 * 119.99763 * 2 1 3 6 6 C 1.34239 * 116.99699 * 60.00200 * 5 2 1 7 7 O 1.20821 * 120.00101 * 0.02562 * 6 5 2 8 8 C 1.50694 * 119.99648 * 180.02562 * 6 5 2 9 9 C 1.53519 * 114.16764 * 179.97438 * 8 6 5 10 10 N 1.47478 * 87.93153 * 139.67014 * 9 8 6 11 11 C 1.46905 * 111.00309 * 221.29913 * 10 9 8 12 12 C 1.52997 * 109.47325 * 170.00109 * 11 10 9 13 13 H 1.08996 * 109.46952 * 54.99956 * 12 11 10 14 14 C 1.47206 * 109.47168 * 294.99733 * 12 11 10 15 15 N 6.58598 * 136.96454 * 157.40569 * 2 1 3 16 16 C 1.53002 * 109.46817 * 175.00015 * 12 11 10 17 17 C 1.50703 * 109.46865 * 184.99692 * 16 12 11 18 18 H 1.08006 * 120.00033 * 0.02562 * 17 16 12 19 19 C 1.37878 * 120.00279 * 179.97438 * 17 16 12 20 20 N 1.31507 * 120.00530 * 180.02562 * 19 17 16 21 21 Si 1.86797 * 119.99615 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47222 * 90.00111 * 21 19 17 23 23 H 1.48502 * 109.47151 * 210.00363 * 21 19 17 24 24 H 1.48504 * 109.47412 * 330.00086 * 21 19 17 25 25 C 1.47479 * 87.83742 * 332.99091 * 10 9 8 26 26 H 1.08990 * 109.47027 * 300.00229 * 1 2 3 27 27 H 1.09005 * 109.46758 * 60.00528 * 1 2 3 28 28 H 1.08998 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46664 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47168 * 299.99253 * 3 2 1 31 31 H 1.08992 * 109.46895 * 59.99992 * 3 2 1 32 32 H 1.09002 * 109.46758 * 300.00441 * 4 2 1 33 33 H 1.09005 * 109.47029 * 59.99854 * 4 2 1 34 34 H 1.08994 * 109.47184 * 180.02562 * 4 2 1 35 35 H 1.09002 * 113.26268 * 47.04719 * 8 6 5 36 36 H 1.08999 * 113.47465 * 24.90695 * 9 8 6 37 37 H 1.08992 * 113.53211 * 254.44383 * 9 8 6 38 38 H 1.08998 * 109.46948 * 50.00006 * 11 10 9 39 39 H 1.09000 * 109.46862 * 290.00324 * 11 10 9 40 40 H 1.08997 * 109.47047 * 304.99674 * 16 12 11 41 41 H 1.08997 * 109.47298 * 65.00333 * 16 12 11 42 42 H 0.96994 * 120.00578 * 179.97438 * 20 19 17 43 43 H 1.09005 * 113.47669 * 141.77612 * 25 10 9 44 44 H 1.08998 * 113.48040 * 272.24021 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6533 -1.9684 1.3379 7 8 0.9567 -2.5028 0.5078 8 6 2.1173 -2.7433 2.5441 9 6 1.6269 -4.1975 2.5838 10 7 2.9630 -4.5785 3.0785 11 6 3.4260 -5.8190 2.4422 12 6 4.8995 -6.0485 2.7845 13 1 5.0263 -6.0418 3.8671 14 6 5.7144 -4.9774 2.1883 15 7 6.3439 -4.1496 1.7268 16 6 5.3478 -7.4010 2.2269 17 6 6.7610 -7.6826 2.6681 18 1 7.2867 -6.9686 3.2849 19 6 7.3826 -8.8522 2.2852 20 7 8.6157 -9.0983 2.6705 21 14 6.4733 -10.0874 1.2190 22 1 6.7182 -9.7802 -0.2130 23 1 6.9612 -11.4568 1.5221 24 1 5.0174 -10.0072 1.5005 25 6 3.4977 -3.3948 2.3800 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2074 -2.1393 34 1 3.1301 -0.7216 -1.2489 35 1 1.9843 -2.2020 3.4808 36 1 1.3959 -4.6049 1.5995 37 1 0.8307 -4.3686 3.3082 38 1 3.3126 -5.7371 1.3613 39 1 2.8332 -6.6577 2.8072 40 1 4.6879 -8.1844 2.5995 41 1 5.3051 -7.3772 1.1380 42 1 9.0529 -9.9212 2.4015 43 1 4.2870 -2.8845 2.9320 44 1 3.7660 -3.5878 1.3413 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453034879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:41:25 Heat of formation + Delta-G solvation = -52.003316 kcal Electronic energy + Delta-G solvation = -23858.799835 eV Core-core repulsion = 20390.651452 eV Total energy + Delta-G solvation = -3468.148383 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.38626 -40.94085 -38.29450 -37.66330 -35.72234 -35.11252 -34.18462 -31.32444 -28.43508 -28.41885 -28.34080 -27.04646 -25.43881 -23.30678 -23.05915 -21.21428 -20.49182 -19.02094 -18.71367 -18.14105 -17.60542 -17.35032 -16.79072 -16.25153 -15.99074 -15.87772 -15.30558 -15.07978 -14.69471 -14.56383 -14.40975 -14.23595 -13.95410 -13.81582 -13.49873 -13.40878 -13.19333 -13.16771 -12.98431 -12.91624 -12.88644 -12.61436 -12.52968 -12.21521 -12.16018 -11.95649 -11.75456 -11.72385 -11.46923 -11.44298 -11.26877 -11.00576 -10.74879 -10.07712 -8.25660 -6.31487 1.05028 1.42780 1.43447 1.54767 1.59088 1.89819 1.91631 2.40017 2.84065 3.09479 3.13512 3.20615 3.57258 3.69045 3.74456 3.80850 3.87952 3.91334 3.99832 4.30498 4.33821 4.50556 4.51784 4.55588 4.56252 4.71196 4.73152 4.76557 4.78043 4.81968 4.82617 4.85381 4.95663 5.07484 5.15390 5.20391 5.23404 5.25180 5.41328 5.48553 5.61914 5.85473 6.24584 6.71513 6.72614 6.78356 7.32966 8.91291 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026574 B = 0.003120 C = 0.003065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.407620 B = 8972.421599 C = 9133.093510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.103 3.897 3 C -0.138 4.138 4 C -0.182 4.182 5 O -0.356 6.356 6 C 0.476 3.524 7 O -0.518 6.518 8 C -0.111 4.111 9 C 0.027 3.973 10 N -0.466 5.466 11 C 0.033 3.967 12 C 0.024 3.976 13 H 0.122 0.878 14 C 0.246 3.754 15 N -0.502 5.502 16 C -0.002 4.002 17 C -0.531 4.531 18 H 0.029 0.971 19 C 0.003 3.997 20 N -0.954 5.954 21 Si 0.947 3.053 22 H -0.278 1.278 23 H -0.289 1.289 24 H -0.221 1.221 25 C 0.012 3.988 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.052 0.948 35 H 0.158 0.842 36 H 0.082 0.918 37 H 0.125 0.875 38 H 0.051 0.949 39 H 0.130 0.870 40 H 0.068 0.932 41 H 0.023 0.977 42 H 0.265 0.735 43 H 0.085 0.915 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.409 16.536 -3.357 28.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.068 3.932 3 C -0.195 4.195 4 C -0.240 4.240 5 O -0.274 6.274 6 C 0.319 3.681 7 O -0.407 6.407 8 C -0.131 4.131 9 C -0.101 4.101 10 N -0.188 5.188 11 C -0.097 4.097 12 C 0.002 3.998 13 H 0.140 0.860 14 C -0.070 4.070 15 N -0.179 5.179 16 C -0.041 4.041 17 C -0.569 4.569 18 H 0.047 0.953 19 C -0.194 4.194 20 N -0.595 5.595 21 Si 0.770 3.230 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.144 1.144 25 C -0.117 4.117 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.072 0.928 35 H 0.175 0.825 36 H 0.100 0.900 37 H 0.143 0.857 38 H 0.070 0.930 39 H 0.148 0.852 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -21.408 17.409 -3.614 27.829 hybrid contribution 0.553 -0.945 -1.261 1.670 sum -20.855 16.464 -4.876 27.014 Atomic orbital electron populations 1.22432 0.93110 1.03784 1.04029 1.22524 0.95190 0.93270 0.82217 1.21882 1.02049 0.91126 1.04416 1.22480 1.01277 1.02212 0.97990 1.86578 1.69730 1.25166 1.45883 1.23570 0.76594 0.80687 0.87235 1.90567 1.36153 1.70274 1.43700 1.22810 0.97767 0.95775 0.96702 1.23824 0.94005 0.90131 1.02108 1.69045 1.04548 1.00634 1.44527 1.22819 0.93202 0.95489 0.98154 1.19063 0.90853 0.88383 1.01469 0.86039 1.29727 0.92448 0.92697 0.92090 1.81119 1.10963 1.14398 1.11463 1.19597 0.95369 0.92483 0.96677 1.21390 0.99061 1.04340 1.32115 0.95286 1.26037 0.95485 1.00528 0.97321 1.70080 1.14615 1.26822 1.47950 0.85714 0.81568 0.77326 0.78415 1.20404 1.21477 1.14360 1.23756 0.96256 0.93400 0.98317 0.91261 0.89142 0.91776 0.92004 0.88174 0.90777 0.92008 0.88884 0.92842 0.82461 0.90023 0.85734 0.93023 0.85190 0.91387 0.95857 0.92629 0.89672 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.77 8.37 71.98 0.60 -2.17 16 2 C 0.10 1.87 1.13 -10.79 -0.01 1.86 16 3 C -0.14 -1.79 8.85 71.98 0.64 -1.15 16 4 C -0.18 -3.55 8.37 71.98 0.60 -2.94 16 5 O -0.36 -7.98 9.89 -51.51 -0.51 -8.49 16 6 C 0.48 10.91 6.83 71.23 0.49 11.40 16 7 O -0.52 -13.42 11.44 21.98 0.25 -13.17 16 8 C -0.11 -2.19 4.59 -11.20 -0.05 -2.24 16 9 C 0.03 0.50 7.06 83.58 0.59 1.09 16 10 N -0.47 -10.66 6.41 -927.88 -5.95 -16.61 16 11 C 0.03 0.81 4.50 86.30 0.39 1.20 16 12 C 0.02 0.81 2.42 -12.60 -0.03 0.78 16 13 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 14 C 0.25 9.81 10.97 89.42 0.98 10.80 16 15 N -0.50 -21.96 18.21 20.03 0.36 -21.60 16 16 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 17 C -0.53 -28.77 9.15 25.60 0.23 -28.53 16 18 H 0.03 1.78 7.84 -2.91 -0.02 1.76 16 19 C 0.00 0.17 5.47 84.66 0.46 0.63 16 20 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 21 Si 0.95 41.55 27.47 68.60 1.88 43.44 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 24 H -0.22 -8.21 6.54 99.48 0.65 -7.56 16 25 C 0.01 0.31 4.99 83.58 0.42 0.73 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.06 1.29 5.89 -2.39 -0.01 1.27 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 1.48 5.89 -2.39 -0.01 1.47 16 33 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.16 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.08 1.63 7.08 -2.39 -0.02 1.61 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.28 7.56 -2.39 -0.02 1.27 16 39 H 0.13 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.07 2.42 7.20 -2.39 -0.02 2.41 16 41 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.08 2.37 7.82 -2.38 -0.02 2.36 16 44 H 0.06 1.64 7.03 -2.39 -0.02 1.62 16 Total: -1.00 -70.91 356.08 2.68 -68.23 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: 0.92 Total: 15.76 kcal Atomic # 6 Polarization: -13.95 SS G_CDS: 5.41 Total: -8.54 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -5.29 Total: -97.23 kcal Atomic # 8 Polarization: -21.41 SS G_CDS: -0.26 Total: -21.66 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 1.88 Total: 43.44 kcal Total: -70.91 2.68 -68.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453034879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.230 kcal (2) G-P(sol) polarization free energy of solvation -70.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds