Wall clock time and date at job start Tue Mar 31 2020 06:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.35319 * 126.66408 * 59.71064 * 5 2 1 7 7 C 1.42275 * 103.91942 * 179.87945 * 6 5 2 8 8 C 1.48334 * 126.93419 * 180.11974 * 7 6 5 9 9 O 1.21494 * 120.00066 * 0.29358 * 8 7 6 10 10 N 1.34771 * 119.99681 * 180.30380 * 8 7 6 11 11 C 1.46499 * 119.99856 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47207 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47116 * 300.00194 * 12 11 10 14 14 C 1.53002 * 109.46720 * 59.99962 * 12 11 10 15 15 C 1.50697 * 109.47243 * 179.97438 * 12 11 10 16 16 H 1.08007 * 119.99891 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00092 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99815 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00107 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47357 * 120.00073 * 19 17 15 22 22 H 1.48499 * 109.47285 * 240.00240 * 19 17 15 23 23 N 1.30973 * 106.12321 * 0.38688 * 7 6 5 24 24 O 1.20904 * 111.44209 * 359.75282 * 23 7 6 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 34 34 H 1.08000 * 128.03791 * 0.02562 * 6 5 2 35 35 H 0.97003 * 120.00447 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47318 * 299.99768 * 11 10 8 37 37 H 1.09003 * 109.47374 * 60.00035 * 11 10 8 38 38 H 1.08997 * 109.47154 * 59.99847 * 13 12 11 39 39 H 1.08998 * 109.46688 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47039 * 299.99808 * 13 12 11 41 41 H 1.09001 * 109.47404 * 60.00440 * 14 12 11 42 42 H 1.08998 * 109.47069 * 179.97438 * 14 12 11 43 43 H 1.08997 * 109.47371 * 300.00044 * 14 12 11 44 44 H 0.97005 * 119.99320 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.7856 -0.3710 -2.5168 7 6 2.4870 -1.3530 -3.2705 8 6 2.5608 -1.4574 -4.7483 9 8 1.9859 -0.6443 -5.4443 10 7 3.2655 -2.4545 -5.3189 11 6 3.3379 -2.5581 -6.7785 12 6 4.1934 -3.7672 -7.1621 13 6 5.6030 -3.5961 -6.5924 14 6 3.5635 -5.0393 -6.5912 15 6 4.2674 -3.8741 -8.6635 16 1 3.7558 -3.1516 -9.2822 17 6 4.9882 -4.8942 -9.2473 18 7 5.6107 -5.7742 -8.4939 19 14 5.0805 -5.0263 -11.1083 20 1 4.3003 -3.9220 -11.7223 21 1 6.4977 -4.9309 -11.5417 22 1 4.5175 -6.3307 -11.5405 23 7 3.0495 -2.1493 -2.3960 24 8 2.8055 -1.8046 -1.2631 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 -1.7488 1.2493 32 1 3.1300 -0.7207 1.2495 33 1 1.6766 -0.2073 2.1393 34 1 1.1956 0.4550 -2.8857 35 1 3.7247 -3.1036 -4.7633 36 1 2.3337 -2.6796 -7.1844 37 1 3.7870 -1.6520 -7.1852 38 1 5.5491 -3.5190 -5.5065 39 1 6.2122 -4.4577 -6.8654 40 1 6.0517 -2.6898 -6.9991 41 1 2.5593 -5.1613 -6.9971 42 1 4.1727 -5.9008 -6.8649 43 1 3.5096 -4.9623 -5.5053 44 1 6.1182 -6.4917 -8.9047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457988892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:28 Heat of formation + Delta-G solvation = 2.426487 kcal Electronic energy + Delta-G solvation = -23826.431881 eV Core-core repulsion = 20360.643751 eV Total energy + Delta-G solvation = -3465.788130 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.11806 -39.25770 -37.66987 -36.41799 -33.96158 -33.30322 -31.16490 -30.65463 -27.80625 -27.70118 -26.14738 -25.72414 -25.25579 -23.62190 -23.26484 -21.34578 -19.47318 -18.79696 -17.80151 -17.39149 -16.75555 -15.79656 -15.27974 -14.96200 -14.78608 -14.63016 -14.44888 -14.37747 -13.78174 -13.40121 -12.93559 -12.87082 -12.77507 -12.70454 -12.21342 -12.08333 -11.90418 -11.49396 -11.48986 -11.41375 -11.24292 -11.20360 -10.89637 -10.67059 -10.44964 -10.35888 -10.23490 -9.94044 -9.64724 -9.53770 -9.34191 -8.79273 -8.53490 -8.35965 -6.02428 -4.12885 1.16790 1.67043 2.79073 3.27194 3.34072 3.36467 3.42145 3.44073 4.02313 4.27956 4.40615 4.46374 4.47665 4.78466 4.95498 5.14787 5.20518 5.24326 5.29514 5.33691 5.36704 5.46180 5.48075 5.59828 5.72976 5.83019 5.85908 5.90603 6.17949 6.27417 6.49143 6.69609 6.84463 6.89563 6.95902 7.00851 7.33892 7.55369 7.68651 7.83654 8.00127 8.07192 8.14463 8.35971 8.49918 8.87757 9.53014 10.99120 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040219 B = 0.002897 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.025228 B = 9663.387041 C = 9987.127508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.017 3.983 3 C -0.142 4.142 4 C -0.148 4.148 5 C -0.030 4.030 6 C -0.179 4.179 7 C -0.018 4.018 8 C 0.585 3.415 9 O -0.535 6.535 10 N -0.697 5.697 11 C 0.130 3.870 12 C 0.056 3.944 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.506 4.506 16 H 0.059 0.941 17 C 0.066 3.934 18 N -0.885 5.885 19 Si 0.894 3.106 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.333 5.333 24 O 0.123 5.877 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.177 0.823 35 H 0.405 0.595 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.006 0.994 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.006 0.994 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 10.337 19.748 23.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 C -0.199 4.199 4 C -0.205 4.205 5 C -0.093 4.093 6 C -0.201 4.201 7 C -0.177 4.177 8 C 0.368 3.632 9 O -0.412 6.412 10 N -0.347 5.347 11 C 0.008 3.992 12 C 0.055 3.945 13 C -0.190 4.190 14 C -0.190 4.190 15 C -0.545 4.545 16 H 0.077 0.923 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.033 5.033 24 O 0.048 5.952 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.195 0.805 35 H 0.241 0.759 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.025 0.975 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.106 0.894 43 H 0.025 0.975 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.815 9.634 18.995 22.363 hybrid contribution -0.131 0.185 -0.974 1.000 sum -6.945 9.819 18.021 21.666 Atomic orbital electron populations 1.21953 0.92069 1.02971 1.02945 1.19170 0.96068 0.94379 0.88817 1.21952 1.01863 0.93178 1.02941 1.21912 1.01999 1.00760 0.95836 1.24416 0.96982 0.90423 0.97465 1.22337 1.04543 1.02602 0.90618 1.23728 1.01312 0.95934 0.96765 1.16957 0.80219 0.82412 0.83628 1.90761 1.46440 1.41802 1.62173 1.46257 1.49874 1.28406 1.10205 1.21872 1.00869 1.00835 0.75644 1.18373 0.91045 0.89116 0.95933 1.21843 1.00009 1.02129 0.95014 1.21846 0.99767 1.02390 0.95003 1.21004 1.31462 1.12001 0.89985 0.92292 1.24889 0.95105 0.95443 0.98110 1.69823 1.32888 1.15277 1.34369 0.86499 0.77750 0.77963 0.85573 1.19742 1.21046 1.21043 1.74206 1.18570 1.20712 0.89836 1.84777 1.51039 1.35864 1.23524 0.91877 0.91724 0.91064 0.91068 0.91878 0.91725 0.91676 0.91676 0.91385 0.80517 0.75872 0.92203 0.92208 0.97466 0.89453 0.95361 0.95369 0.89436 0.97469 0.93020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.36 37.16 0.31 -0.54 16 2 C 0.02 0.12 0.94 -155.66 -0.15 -0.03 16 3 C -0.14 -0.85 8.36 37.16 0.31 -0.54 16 4 C -0.15 -0.90 8.07 37.16 0.30 -0.60 16 5 C -0.03 -0.32 5.76 -35.35 -0.20 -0.52 16 6 C -0.18 -2.28 10.40 -39.07 -0.41 -2.69 16 7 C -0.02 -0.29 7.19 -82.53 -0.59 -0.88 16 8 C 0.59 11.26 7.85 -12.11 -0.10 11.16 16 9 O -0.54 -11.52 16.95 5.37 0.09 -11.43 16 10 N -0.70 -13.73 4.96 -61.09 -0.30 -14.03 16 11 C 0.13 2.85 4.50 -4.04 -0.02 2.83 16 12 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 13 C -0.13 -3.10 8.08 37.16 0.30 -2.80 16 14 C -0.13 -3.11 8.08 37.16 0.30 -2.81 16 15 C -0.51 -13.41 8.01 -34.44 -0.28 -13.69 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 17 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 18 N -0.89 -23.92 9.35 55.43 0.52 -23.40 16 19 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 N -0.33 -5.18 11.84 33.29 0.39 -4.79 16 24 O 0.12 1.59 10.65 17.26 0.18 1.78 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.40 8.02 -51.93 -0.42 -0.02 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.40 8.03 -51.93 -0.42 -0.02 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.18 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.41 7.71 5.92 -40.82 -0.24 7.47 16 36 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 39 H 0.09 2.24 6.07 -51.93 -0.32 1.93 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.09 2.25 6.07 -51.93 -0.31 1.93 16 43 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 44 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 357.39 15.07 5.39 5.39 Total: -1.00 -29.20 357.39 -6.17 -35.37 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.03 Total: 3.44 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -0.39 Total: -8.18 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.61 Total: -42.22 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.27 Total: -9.66 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.20 -6.17 -35.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.796 kcal (2) G-P(sol) polarization free energy of solvation -29.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds