Wall clock time and date at job start Tue Mar 31 2020 06:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 6 6 C 1.35319 * 126.66408 * 59.71064 * 5 2 1 7 7 C 1.42275 * 103.91942 * 179.87945 * 6 5 2 8 8 C 1.48334 * 126.93419 * 180.11974 * 7 6 5 9 9 O 1.21494 * 120.00066 * 0.29358 * 8 7 6 10 10 N 1.34771 * 119.99681 * 180.30380 * 8 7 6 11 11 C 1.46499 * 119.99856 * 179.97438 * 10 8 7 12 12 C 1.53006 * 109.47207 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47116 * 300.00194 * 12 11 10 14 14 C 1.53002 * 109.46720 * 59.99962 * 12 11 10 15 15 C 1.50697 * 109.47243 * 179.97438 * 12 11 10 16 16 H 1.08007 * 119.99891 * 0.02562 * 15 12 11 17 17 C 1.37874 * 120.00092 * 180.02562 * 15 12 11 18 18 N 1.31516 * 119.99815 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00107 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47233 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.47357 * 120.00073 * 19 17 15 22 22 H 1.48499 * 109.47285 * 240.00240 * 19 17 15 23 23 N 1.30973 * 106.12321 * 0.38688 * 7 6 5 24 24 O 1.20904 * 111.44209 * 359.75282 * 23 7 6 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 29 29 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 32 32 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 34 34 H 1.08000 * 128.03791 * 0.02562 * 6 5 2 35 35 H 0.97003 * 120.00447 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47318 * 299.99768 * 11 10 8 37 37 H 1.09003 * 109.47374 * 60.00035 * 11 10 8 38 38 H 1.08997 * 109.47154 * 59.99847 * 13 12 11 39 39 H 1.08998 * 109.46688 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47039 * 299.99808 * 13 12 11 41 41 H 1.09001 * 109.47404 * 60.00440 * 14 12 11 42 42 H 1.08998 * 109.47069 * 179.97438 * 14 12 11 43 43 H 1.08997 * 109.47371 * 300.00044 * 14 12 11 44 44 H 0.97005 * 119.99320 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0324 -0.7105 -1.2304 6 6 1.7856 -0.3710 -2.5168 7 6 2.4870 -1.3530 -3.2705 8 6 2.5608 -1.4574 -4.7483 9 8 1.9859 -0.6443 -5.4443 10 7 3.2655 -2.4545 -5.3189 11 6 3.3379 -2.5581 -6.7785 12 6 4.1934 -3.7672 -7.1621 13 6 5.6030 -3.5961 -6.5924 14 6 3.5635 -5.0393 -6.5912 15 6 4.2674 -3.8741 -8.6635 16 1 3.7558 -3.1516 -9.2822 17 6 4.9882 -4.8942 -9.2473 18 7 5.6107 -5.7742 -8.4939 19 14 5.0805 -5.0263 -11.1083 20 1 4.3003 -3.9220 -11.7223 21 1 6.4977 -4.9309 -11.5417 22 1 4.5175 -6.3307 -11.5405 23 7 3.0495 -2.1493 -2.3960 24 8 2.8055 -1.8046 -1.2631 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.6767 1.9563 0.8899 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 -1.7488 1.2493 32 1 3.1300 -0.7207 1.2495 33 1 1.6766 -0.2073 2.1393 34 1 1.1956 0.4550 -2.8857 35 1 3.7247 -3.1036 -4.7633 36 1 2.3337 -2.6796 -7.1844 37 1 3.7870 -1.6520 -7.1852 38 1 5.5491 -3.5190 -5.5065 39 1 6.2122 -4.4577 -6.8654 40 1 6.0517 -2.6898 -6.9991 41 1 2.5593 -5.1613 -6.9971 42 1 4.1727 -5.9008 -6.8649 43 1 3.5096 -4.9623 -5.5053 44 1 6.1182 -6.4917 -8.9047 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457988892.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:27 Heat of formation + Delta-G solvation = -13.915797 kcal Electronic energy + Delta-G solvation = -23827.140535 eV Core-core repulsion = 20360.643751 eV Total energy + Delta-G solvation = -3466.496784 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.23411 -40.85985 -38.29758 -38.22603 -35.31589 -34.90725 -32.83035 -31.89891 -28.39859 -28.14331 -27.75498 -27.65230 -27.19366 -25.04577 -24.24321 -22.42951 -20.85400 -20.60864 -18.91990 -18.29585 -18.22028 -17.66591 -16.82368 -16.56171 -16.39571 -15.83488 -15.15233 -14.96933 -14.93848 -14.80000 -14.65677 -14.60916 -14.10260 -13.28824 -13.22952 -13.18787 -13.16339 -12.75764 -12.70421 -12.59477 -12.54131 -12.33754 -12.25234 -12.16927 -11.99991 -11.77081 -11.60387 -11.59288 -11.55987 -11.22772 -10.76383 -10.48591 -10.44954 -10.15781 -8.05372 -6.22035 0.00039 0.62097 1.40943 1.44608 1.54362 1.80988 1.99542 2.00266 2.44667 2.85804 3.18455 3.36139 3.81310 3.94243 3.97960 3.99893 4.22818 4.32923 4.41187 4.42232 4.61859 4.80763 4.81366 4.82830 4.87344 4.91555 4.96752 5.02085 5.03338 5.03396 5.10456 5.12424 5.18607 5.31500 5.41732 5.43071 5.45034 5.58845 5.63528 6.05296 6.13239 6.31512 6.37245 6.80892 6.89268 7.01430 7.46114 8.94395 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.040219 B = 0.002897 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.025228 B = 9663.387041 C = 9987.127508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.018 3.982 3 C -0.142 4.142 4 C -0.149 4.149 5 C -0.008 4.008 6 C -0.185 4.185 7 C -0.044 4.044 8 C 0.587 3.413 9 O -0.562 6.562 10 N -0.696 5.696 11 C 0.144 3.856 12 C 0.052 3.948 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.027 3.973 18 N -0.901 5.901 19 Si 0.950 3.050 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.281 1.281 23 N -0.350 5.350 24 O 0.134 5.866 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.091 0.909 34 H 0.191 0.809 35 H 0.409 0.591 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.066 0.934 43 H 0.027 0.973 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.991 11.298 21.709 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.017 3.983 3 C -0.199 4.199 4 C -0.206 4.206 5 C -0.071 4.071 6 C -0.208 4.208 7 C -0.202 4.202 8 C 0.372 3.628 9 O -0.441 6.441 10 N -0.347 5.347 11 C 0.021 3.979 12 C 0.051 3.949 13 C -0.180 4.180 14 C -0.180 4.180 15 C -0.566 4.566 16 H 0.068 0.932 17 C -0.173 4.173 18 N -0.540 5.540 19 Si 0.777 3.223 20 H -0.197 1.197 21 H -0.207 1.207 22 H -0.207 1.207 23 N -0.049 5.049 24 O 0.056 5.944 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.208 0.792 35 H 0.246 0.754 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.046 0.954 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.488 10.585 20.954 24.641 hybrid contribution 0.058 -0.082 -1.461 1.464 sum -7.430 10.504 19.494 23.357 Atomic orbital electron populations 1.21989 0.90857 1.02966 1.04113 1.19455 0.96863 0.94666 0.87365 1.21988 1.01525 0.92301 1.04107 1.21949 1.01755 1.00713 0.96163 1.25151 0.94791 0.88848 0.98353 1.22521 1.04817 1.02598 0.90884 1.23438 1.03575 0.97957 0.95190 1.17263 0.79119 0.81444 0.84966 1.90735 1.47390 1.42610 1.63337 1.46110 1.50403 1.28980 1.09168 1.21496 0.99731 0.99510 0.77119 1.18365 0.91633 0.89983 0.94896 1.21689 0.99252 1.00778 0.96251 1.21692 0.98826 1.01223 0.96239 1.21265 1.31762 1.12107 0.91474 0.93202 1.25509 0.94879 0.95223 1.01711 1.69930 1.33005 1.15434 1.35615 0.85624 0.77655 0.77797 0.81239 1.19746 1.20714 1.20706 1.74199 1.19058 1.21170 0.90452 1.84749 1.50858 1.36442 1.22357 0.92493 0.91946 0.88594 0.88596 0.92496 0.91953 0.92145 0.92145 0.88980 0.79174 0.75416 0.93186 0.93192 0.95421 0.91580 0.95866 0.95879 0.91564 0.95424 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.36 71.98 0.60 -0.68 16 2 C 0.02 0.20 0.94 -52.93 -0.05 0.15 16 3 C -0.14 -1.28 8.36 71.98 0.60 -0.68 16 4 C -0.15 -1.37 8.07 71.98 0.58 -0.79 16 5 C -0.01 -0.16 5.76 25.01 0.14 -0.01 16 6 C -0.19 -4.53 10.40 22.60 0.24 -4.29 16 7 C -0.04 -1.41 7.19 42.97 0.31 -1.10 16 8 C 0.59 22.70 7.85 86.93 0.68 23.39 16 9 O -0.56 -24.46 16.95 -3.70 -0.06 -24.52 16 10 N -0.70 -27.48 4.96 -465.50 -2.31 -29.79 16 11 C 0.14 6.43 4.50 86.38 0.39 6.82 16 12 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 13 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 14 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 15 C -0.53 -28.31 8.01 25.60 0.21 -28.10 16 16 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 17 C 0.03 1.41 5.15 84.65 0.44 1.85 16 18 N -0.90 -49.00 9.35 21.45 0.20 -48.80 16 19 Si 0.95 42.98 29.54 68.60 2.03 45.01 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 23 N -0.35 -10.65 11.84 -49.53 -0.59 -11.23 16 24 O 0.13 3.28 10.65 71.93 0.77 4.05 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.61 8.02 -2.39 -0.02 0.59 16 27 H 0.10 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 0.61 8.03 -2.39 -0.02 0.59 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.19 4.01 8.06 -2.91 -0.02 3.98 16 35 H 0.41 15.43 5.92 -92.71 -0.55 14.88 16 36 H 0.05 2.30 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 39 H 0.07 3.41 6.07 -2.39 -0.01 3.40 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.07 3.42 6.07 -2.39 -0.01 3.40 16 43 H 0.03 1.14 6.86 -2.39 -0.02 1.12 16 44 H 0.26 13.59 8.31 -92.70 -0.77 12.82 16 Total: -1.00 -62.65 357.39 5.75 -56.91 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.44 Total: 19.68 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: 5.27 Total: -11.29 kcal Atomic # 7 Polarization: -87.13 SS G_CDS: -2.69 Total: -89.82 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: 0.70 Total: -20.47 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -62.65 5.75 -56.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457988892.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.989 kcal (2) G-P(sol) polarization free energy of solvation -62.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds