Wall clock time and date at job start Tue Mar 31 2020 07:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 H 1.08998 * 109.46571 * 305.00110 * 3 2 1 5 5 C 1.52996 * 109.46827 * 64.99815 * 3 2 1 6 6 C 1.50696 * 109.47315 * 185.00206 * 3 2 1 7 7 C 1.41272 * 126.70312 * 274.71086 * 6 3 2 8 8 C 1.36823 * 103.84420 * 179.89276 * 7 6 3 9 9 C 1.47518 * 126.94120 * 180.11612 * 8 7 6 10 10 O 1.21581 * 119.99921 * 0.32406 * 9 8 7 11 11 N 1.34774 * 119.99644 * 180.32339 * 9 8 7 12 12 C 1.46495 * 119.99818 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47335 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47212 * 299.99958 * 13 12 11 15 15 C 1.53001 * 109.46788 * 59.99933 * 13 12 11 16 16 C 1.50699 * 109.47329 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00131 * 1.34812 * 16 13 12 18 18 C 1.37871 * 120.00240 * 181.34804 * 16 13 12 19 19 N 1.31521 * 120.00380 * 193.97673 * 18 16 13 20 20 Si 1.86807 * 120.00054 * 13.97750 * 18 16 13 21 21 H 1.48497 * 109.46931 * 84.54535 * 20 18 16 22 22 H 1.48494 * 109.47206 * 204.54885 * 20 18 16 23 23 H 1.48503 * 109.46801 * 324.55261 * 20 18 16 24 24 O 1.34643 * 106.11314 * 0.36166 * 8 7 6 25 25 N 1.20881 * 111.46821 * 359.75739 * 24 8 7 26 26 H 1.09001 * 109.47202 * 299.99945 * 1 2 3 27 27 H 1.09000 * 109.47181 * 59.99699 * 1 2 3 28 28 H 1.08997 * 109.47123 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47202 * 240.00055 * 2 1 3 30 30 H 1.09003 * 109.47236 * 119.99768 * 2 1 3 31 31 H 1.08997 * 109.47089 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47493 * 300.00448 * 5 3 2 33 33 H 1.08998 * 109.47304 * 60.00744 * 5 3 2 34 34 H 1.08000 * 128.07233 * 359.97438 * 7 6 3 35 35 H 0.97007 * 120.00082 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47443 * 299.99927 * 12 11 9 37 37 H 1.08998 * 109.47182 * 59.99820 * 12 11 9 38 38 H 1.09003 * 109.46980 * 69.36823 * 14 13 12 39 39 H 1.08999 * 109.47432 * 189.36245 * 14 13 12 40 40 H 1.08996 * 109.47023 * 309.36829 * 14 13 12 41 41 H 1.09001 * 109.47515 * 60.00510 * 15 13 12 42 42 H 1.09004 * 109.47193 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47468 * 299.99765 * 15 13 12 44 44 H 0.96999 * 120.00168 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1239 7 6 4.4761 1.3195 0.9285 8 6 5.6891 1.3776 0.2982 9 6 7.0204 1.2932 0.9279 10 8 7.1156 1.1514 2.1317 11 7 8.1312 1.3734 0.1689 12 6 9.4533 1.2891 0.7941 13 6 10.5347 1.4061 -0.2818 14 6 10.3747 0.2680 -1.2916 15 6 10.3954 2.7493 -1.0009 16 6 11.8948 1.3200 0.3615 17 1 11.9794 1.1725 1.4280 18 6 13.0312 1.4294 -0.4114 19 7 14.1997 1.0855 0.0847 20 14 12.9114 2.0662 -2.1635 21 1 12.9358 3.5509 -2.1533 22 1 14.0605 1.5576 -2.9547 23 1 11.6424 1.5962 -2.7752 24 8 5.4221 1.5328 -1.0124 25 7 4.2318 1.5668 -1.2204 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9982 3.1543 1.3072 32 1 0.5489 2.1252 1.3969 33 1 2.0699 1.5876 2.1491 34 1 4.2787 1.2038 1.9840 35 1 8.0552 1.4862 -0.7916 36 1 9.5672 2.0996 1.5139 37 1 9.5527 0.3320 1.3061 38 1 9.4667 0.4240 -1.8741 39 1 11.2361 0.2508 -1.9593 40 1 10.3073 -0.6817 -0.7610 41 1 10.5095 3.5602 -0.2815 42 1 11.1656 2.8326 -1.7678 43 1 9.4117 2.8121 -1.4662 44 1 14.9992 1.1622 -0.4592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:39 Heat of formation + Delta-G solvation = 19.906917 kcal Electronic energy + Delta-G solvation = -23715.215250 eV Core-core repulsion = 20250.185128 eV Total energy + Delta-G solvation = -3465.030121 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -45.12236 -39.52727 -37.45453 -36.85862 -33.69151 -33.30020 -32.09669 -31.38830 -29.84156 -26.59564 -26.36914 -25.65299 -25.05522 -23.44076 -23.11266 -21.23285 -19.88838 -19.32834 -18.21756 -17.83407 -16.37637 -16.15628 -15.67364 -15.36690 -15.11776 -14.97498 -14.84447 -14.10042 -13.98713 -13.56577 -13.30419 -13.10154 -12.95080 -12.67473 -12.53705 -12.27836 -12.20106 -12.06857 -11.79248 -11.57318 -11.41839 -11.35616 -11.02901 -10.51913 -10.44027 -10.23762 -10.21031 -10.10765 -10.08340 -9.81327 -9.17474 -8.75931 -8.72428 -8.49372 -6.17775 -4.15731 0.76281 1.88898 2.61967 3.09983 3.23028 3.30417 3.37637 3.38650 3.72672 4.27801 4.33275 4.51159 4.67061 4.72879 4.92135 4.94452 5.07000 5.12849 5.14375 5.19307 5.32391 5.49900 5.56502 5.59633 5.64462 5.68749 5.78220 5.90922 5.94412 5.97097 6.00644 6.31654 6.38395 6.44901 6.53873 6.58071 6.64967 6.88080 7.15251 7.37173 7.55870 7.67278 7.96723 8.18687 8.41132 8.86833 9.45832 10.95061 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037198 B = 0.002969 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.541185 B = 9426.943519 C = 9750.756224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.012 4.012 4 H 0.089 0.911 5 C -0.148 4.148 6 C 0.017 3.983 7 C -0.156 4.156 8 C -0.072 4.072 9 C 0.594 3.406 10 O -0.518 6.518 11 N -0.702 5.702 12 C 0.139 3.861 13 C 0.029 3.971 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.514 4.514 17 H 0.078 0.922 18 C 0.076 3.924 19 N -0.890 5.890 20 Si 0.884 3.116 21 H -0.285 1.285 22 H -0.305 1.305 23 H -0.248 1.248 24 O 0.115 5.885 25 N -0.348 5.348 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.181 0.819 35 H 0.404 0.596 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.023 0.977 39 H 0.058 0.942 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.031 0.969 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.729 0.358 -1.459 24.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.031 4.031 4 H 0.107 0.893 5 C -0.206 4.206 6 C -0.141 4.141 7 C -0.178 4.178 8 C -0.138 4.138 9 C 0.376 3.624 10 O -0.395 6.395 11 N -0.352 5.352 12 C 0.017 3.983 13 C 0.027 3.973 14 C -0.202 4.202 15 C -0.207 4.207 16 C -0.552 4.552 17 H 0.096 0.904 18 C -0.127 4.127 19 N -0.526 5.526 20 Si 0.717 3.283 21 H -0.213 1.213 22 H -0.234 1.234 23 H -0.174 1.174 24 O 0.043 5.957 25 N -0.049 5.049 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.198 0.802 35 H 0.240 0.760 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.050 0.950 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -24.730 0.387 -1.891 24.805 hybrid contribution 0.176 0.400 -0.667 0.798 sum -24.554 0.787 -2.558 24.699 Atomic orbital electron populations 1.21817 0.95015 1.02020 1.02114 1.21572 0.96283 0.94789 1.02846 1.19597 0.85388 0.97900 1.00250 0.89267 1.21902 1.01974 1.00718 0.95969 1.23596 0.98780 1.03266 0.88465 1.22768 0.89453 1.03555 1.02021 1.24530 0.97730 1.07466 0.84120 1.16586 0.81131 0.78481 0.86187 1.90863 1.85400 1.50323 1.12938 1.46298 1.06589 1.70831 1.11532 1.21707 0.78090 1.02088 0.96377 1.18733 0.94854 0.91577 0.92095 1.22325 0.99344 0.99522 0.99059 1.22390 0.98425 0.99925 1.00001 1.20676 0.87132 1.51280 0.96128 0.90435 1.24965 0.95234 0.94379 0.98076 1.69947 0.98944 1.45806 1.37920 0.87310 0.76538 0.78889 0.85591 1.21296 1.23365 1.17415 1.84986 1.19385 1.66381 1.24960 1.73718 0.89336 1.17582 1.24222 0.92158 0.92585 0.92401 0.91667 0.91272 0.92146 0.91223 0.91812 0.80174 0.76003 0.91234 0.91142 0.95775 0.92345 0.93269 0.92639 0.93876 0.95044 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.67 37.16 0.36 -0.49 16 2 C -0.12 -0.85 5.38 -26.73 -0.14 -0.99 16 3 C -0.01 -0.10 2.85 -91.77 -0.26 -0.36 16 4 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 5 C -0.15 -0.97 8.56 37.16 0.32 -0.65 16 6 C 0.02 0.19 6.21 -82.16 -0.51 -0.32 16 7 C -0.16 -1.84 10.12 -38.94 -0.39 -2.23 16 8 C -0.07 -0.99 7.29 -36.31 -0.26 -1.26 16 9 C 0.59 9.50 7.82 -12.48 -0.10 9.40 16 10 O -0.52 -9.72 16.91 5.29 0.09 -9.63 16 11 N -0.70 -11.25 5.00 -61.36 -0.31 -11.56 16 12 C 0.14 2.64 4.49 -4.04 -0.02 2.62 16 13 C 0.03 0.61 0.50 -155.66 -0.08 0.53 16 14 C -0.15 -2.89 7.53 37.15 0.28 -2.61 16 15 C -0.15 -2.98 7.52 37.16 0.28 -2.71 16 16 C -0.51 -13.45 8.62 -34.44 -0.30 -13.75 16 17 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 18 C 0.08 2.09 5.32 -17.82 -0.09 1.99 16 19 N -0.89 -26.22 13.96 55.43 0.77 -25.45 16 20 Si 0.88 20.80 22.79 -169.99 -3.87 16.93 16 21 H -0.29 -6.70 7.10 56.52 0.40 -6.30 16 22 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 23 H -0.25 -5.31 4.65 56.52 0.26 -5.04 16 24 O 0.11 1.56 11.04 15.55 0.17 1.73 16 25 N -0.35 -4.61 12.04 33.52 0.40 -4.21 16 26 H 0.06 0.29 6.57 -51.93 -0.34 -0.05 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.35 6.57 -51.93 -0.34 0.01 16 33 H 0.06 0.40 7.48 -51.93 -0.39 0.01 16 34 H 0.18 1.82 7.65 -52.49 -0.40 1.42 16 35 H 0.40 5.84 6.09 -40.82 -0.25 5.59 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.02 0.40 7.13 -51.93 -0.37 0.03 16 39 H 0.06 1.24 4.30 -51.93 -0.22 1.02 16 40 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.04 0.91 2.25 -51.93 -0.12 0.79 16 43 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 44 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 345.07 15.07 5.20 5.20 Total: -1.00 -29.75 345.07 -5.17 -34.93 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.71 Total: 2.88 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -0.92 Total: -10.82 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.87 Total: -41.22 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.26 Total: -7.90 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -3.87 Total: 16.93 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.75 -5.17 -34.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.834 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds