Wall clock time and date at job start Tue Mar 31 2020 07:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47376 * 2 1 4 4 H 1.08998 * 109.46571 * 305.00110 * 3 2 1 5 5 C 1.52996 * 109.46827 * 64.99815 * 3 2 1 6 6 C 1.50696 * 109.47315 * 185.00206 * 3 2 1 7 7 C 1.41272 * 126.70312 * 274.71086 * 6 3 2 8 8 C 1.36823 * 103.84420 * 179.89276 * 7 6 3 9 9 C 1.47518 * 126.94120 * 180.11612 * 8 7 6 10 10 O 1.21581 * 119.99921 * 0.32406 * 9 8 7 11 11 N 1.34774 * 119.99644 * 180.32339 * 9 8 7 12 12 C 1.46495 * 119.99818 * 180.02562 * 11 9 8 13 13 C 1.53000 * 109.47335 * 179.97438 * 12 11 9 14 14 C 1.52994 * 109.47212 * 299.99958 * 13 12 11 15 15 C 1.53001 * 109.46788 * 59.99933 * 13 12 11 16 16 C 1.50699 * 109.47329 * 179.97438 * 13 12 11 17 17 H 1.07999 * 120.00131 * 1.34812 * 16 13 12 18 18 C 1.37871 * 120.00240 * 181.34804 * 16 13 12 19 19 N 1.31521 * 120.00380 * 193.97673 * 18 16 13 20 20 Si 1.86807 * 120.00054 * 13.97750 * 18 16 13 21 21 H 1.48497 * 109.46931 * 84.54535 * 20 18 16 22 22 H 1.48494 * 109.47206 * 204.54885 * 20 18 16 23 23 H 1.48503 * 109.46801 * 324.55261 * 20 18 16 24 24 O 1.34643 * 106.11314 * 0.36166 * 8 7 6 25 25 N 1.20881 * 111.46821 * 359.75739 * 24 8 7 26 26 H 1.09001 * 109.47202 * 299.99945 * 1 2 3 27 27 H 1.09000 * 109.47181 * 59.99699 * 1 2 3 28 28 H 1.08997 * 109.47123 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47202 * 240.00055 * 2 1 3 30 30 H 1.09003 * 109.47236 * 119.99768 * 2 1 3 31 31 H 1.08997 * 109.47089 * 180.02562 * 5 3 2 32 32 H 1.09003 * 109.47493 * 300.00448 * 5 3 2 33 33 H 1.08998 * 109.47304 * 60.00744 * 5 3 2 34 34 H 1.08000 * 128.07233 * 359.97438 * 7 6 3 35 35 H 0.97007 * 120.00082 * 359.97438 * 11 9 8 36 36 H 1.09001 * 109.47443 * 299.99927 * 12 11 9 37 37 H 1.08998 * 109.47182 * 59.99820 * 12 11 9 38 38 H 1.09003 * 109.46980 * 69.36823 * 14 13 12 39 39 H 1.08999 * 109.47432 * 189.36245 * 14 13 12 40 40 H 1.08996 * 109.47023 * 309.36829 * 14 13 12 41 41 H 1.09001 * 109.47515 * 60.00510 * 15 13 12 42 42 H 1.09004 * 109.47193 * 180.02562 * 15 13 12 43 43 H 1.09002 * 109.47468 * 299.99765 * 15 13 12 44 44 H 0.96999 * 120.00168 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4443 -0.1239 7 6 4.4761 1.3195 0.9285 8 6 5.6891 1.3776 0.2982 9 6 7.0204 1.2932 0.9279 10 8 7.1156 1.1514 2.1317 11 7 8.1312 1.3734 0.1689 12 6 9.4533 1.2891 0.7941 13 6 10.5347 1.4061 -0.2818 14 6 10.3747 0.2680 -1.2916 15 6 10.3954 2.7493 -1.0009 16 6 11.8948 1.3200 0.3615 17 1 11.9794 1.1725 1.4280 18 6 13.0312 1.4294 -0.4114 19 7 14.1997 1.0855 0.0847 20 14 12.9114 2.0662 -2.1635 21 1 12.9358 3.5509 -2.1533 22 1 14.0605 1.5576 -2.9547 23 1 11.6424 1.5962 -2.7752 24 8 5.4221 1.5328 -1.0124 25 7 4.2318 1.5668 -1.2204 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.9982 3.1543 1.3072 32 1 0.5489 2.1252 1.3969 33 1 2.0699 1.5876 2.1491 34 1 4.2787 1.2038 1.9840 35 1 8.0552 1.4862 -0.7916 36 1 9.5672 2.0996 1.5139 37 1 9.5527 0.3320 1.3061 38 1 9.4667 0.4240 -1.8741 39 1 11.2361 0.2508 -1.9593 40 1 10.3073 -0.6817 -0.7610 41 1 10.5095 3.5602 -0.2815 42 1 11.1656 2.8326 -1.7678 43 1 9.4117 2.8121 -1.4662 44 1 14.9992 1.1622 -0.4592 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990376.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:57:38 Heat of formation + Delta-G solvation = 0.542428 kcal Electronic energy + Delta-G solvation = -23716.054957 eV Core-core repulsion = 20250.185128 eV Total energy + Delta-G solvation = -3465.869829 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.10021 -40.90419 -38.49941 -38.10657 -35.18509 -34.23102 -33.64521 -32.82422 -30.38316 -28.10453 -27.91911 -27.01710 -26.27507 -24.63947 -24.01572 -22.08429 -21.08615 -20.83488 -19.37343 -18.83401 -18.08237 -17.46880 -17.09254 -16.79652 -16.38122 -15.91993 -15.82937 -15.08448 -14.96859 -14.77609 -14.70696 -14.55904 -14.35956 -14.02083 -13.75599 -13.66316 -13.01392 -12.99587 -12.89067 -12.51588 -12.38986 -12.20286 -12.17083 -11.96072 -11.95584 -11.76731 -11.58340 -11.52237 -11.07338 -11.04961 -10.85843 -10.61234 -10.40456 -10.15707 -8.29163 -6.30556 -0.31199 0.97267 1.38132 1.39249 1.49162 1.51525 1.87106 2.18377 2.35599 2.91312 3.07067 3.37932 3.83356 3.87920 3.98652 4.04073 4.08666 4.15554 4.31840 4.40409 4.46102 4.56325 4.62030 4.73057 4.75314 4.81997 4.85184 4.85672 4.93232 5.03012 5.06593 5.08427 5.09345 5.13617 5.18728 5.31538 5.38888 5.49205 5.49922 5.70378 5.78237 6.25335 6.33918 6.73376 6.89273 7.00553 7.34461 8.87580 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.037198 B = 0.002969 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.541185 B = 9426.943519 C = 9750.756224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.012 4.012 4 H 0.092 0.908 5 C -0.146 4.146 6 C 0.025 3.975 7 C -0.143 4.143 8 C -0.087 4.087 9 C 0.602 3.398 10 O -0.550 6.550 11 N -0.694 5.694 12 C 0.154 3.846 13 C 0.027 3.973 14 C -0.145 4.145 15 C -0.151 4.151 16 C -0.514 4.514 17 H 0.034 0.966 18 C 0.019 3.981 19 N -0.945 5.945 20 Si 0.941 3.059 21 H -0.282 1.282 22 H -0.317 1.317 23 H -0.206 1.206 24 O 0.109 5.891 25 N -0.363 5.363 26 H 0.071 0.929 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.197 0.803 35 H 0.415 0.585 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.044 0.956 41 H 0.051 0.949 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.195 0.875 -3.014 28.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.032 4.032 4 H 0.110 0.890 5 C -0.204 4.204 6 C -0.133 4.133 7 C -0.165 4.165 8 C -0.152 4.152 9 C 0.386 3.614 10 O -0.429 6.429 11 N -0.345 5.345 12 C 0.031 3.969 13 C 0.026 3.974 14 C -0.202 4.202 15 C -0.208 4.208 16 C -0.553 4.553 17 H 0.052 0.948 18 C -0.179 4.179 19 N -0.584 5.584 20 Si 0.770 3.230 21 H -0.210 1.210 22 H -0.246 1.246 23 H -0.130 1.130 24 O 0.038 5.962 25 N -0.065 5.065 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.215 0.785 35 H 0.253 0.747 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.089 0.911 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.235 0.908 -3.466 28.461 hybrid contribution 1.163 0.204 -0.057 1.182 sum -27.072 1.112 -3.523 27.322 Atomic orbital electron populations 1.21803 0.93534 1.02533 1.02803 1.21556 0.97538 0.93937 1.02252 1.19778 0.83270 0.98738 1.01376 0.88984 1.21921 1.03289 1.00218 0.94971 1.24090 1.00125 1.01552 0.87545 1.23074 0.88844 1.01621 1.02931 1.24088 0.96884 1.09534 0.84740 1.16690 0.81710 0.77318 0.85712 1.90850 1.86049 1.51595 1.14357 1.46028 1.05467 1.71043 1.11976 1.21268 0.79231 1.00885 0.95555 1.18668 0.92469 0.93390 0.92877 1.22260 1.00635 0.98628 0.98702 1.22336 1.00391 0.98382 0.99664 1.20987 0.90057 1.49767 0.94454 0.94789 1.25808 0.94685 0.94666 1.02744 1.70103 0.99968 1.48338 1.39971 0.86396 0.77867 0.78221 0.80492 1.20964 1.24648 1.12954 1.84975 1.19652 1.66960 1.24592 1.73714 0.89370 1.18358 1.25069 0.91012 0.92356 0.92035 0.92996 0.91172 0.92549 0.89325 0.91457 0.78547 0.74707 0.92441 0.92655 0.91854 0.93554 0.93636 0.93026 0.94684 0.91059 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.67 71.98 0.70 -0.57 16 2 C -0.11 -1.40 5.38 30.60 0.16 -1.23 16 3 C -0.01 -0.17 2.85 -11.54 -0.03 -0.20 16 4 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 5 C -0.15 -1.47 8.56 71.98 0.62 -0.86 16 6 C 0.02 0.50 6.21 43.56 0.27 0.77 16 7 C -0.14 -3.05 10.12 22.68 0.23 -2.82 16 8 C -0.09 -2.21 7.29 24.39 0.18 -2.03 16 9 C 0.60 18.41 7.82 86.69 0.68 19.09 16 10 O -0.55 -20.28 16.91 -3.97 -0.07 -20.34 16 11 N -0.69 -20.93 5.00 -466.31 -2.33 -23.27 16 12 C 0.15 5.77 4.49 86.38 0.39 6.16 16 13 C 0.03 1.11 0.50 -52.93 -0.03 1.09 16 14 C -0.14 -5.40 7.53 71.98 0.54 -4.86 16 15 C -0.15 -5.55 7.52 71.98 0.54 -5.01 16 16 C -0.51 -27.59 8.62 25.60 0.22 -27.37 16 17 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 18 C 0.02 1.04 5.32 84.65 0.45 1.49 16 19 N -0.94 -57.88 13.96 21.45 0.30 -57.58 16 20 Si 0.94 42.39 22.79 68.60 1.56 43.96 16 21 H -0.28 -12.51 7.10 99.48 0.71 -11.80 16 22 H -0.32 -14.83 7.11 99.48 0.71 -14.12 16 23 H -0.21 -7.87 4.65 99.48 0.46 -7.41 16 24 O 0.11 2.72 11.04 65.82 0.73 3.45 16 25 N -0.36 -8.85 12.04 -48.86 -0.59 -9.44 16 26 H 0.07 0.45 6.57 -2.39 -0.02 0.43 16 27 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.57 6.57 -2.39 -0.02 0.56 16 33 H 0.07 0.64 7.48 -2.39 -0.02 0.62 16 34 H 0.20 3.48 7.65 -2.91 -0.02 3.45 16 35 H 0.41 10.63 6.09 -92.70 -0.56 10.07 16 36 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 1.86 7.13 -2.39 -0.02 1.85 16 39 H 0.05 1.84 4.30 -2.39 -0.01 1.83 16 40 H 0.04 1.71 8.12 -2.39 -0.02 1.69 16 41 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.03 1.36 2.25 -2.38 -0.01 1.35 16 43 H 0.07 2.05 6.86 -2.39 -0.02 2.03 16 44 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -66.45 345.07 4.72 -61.73 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: 0.20 Total: 17.84 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 4.92 Total: -16.35 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -2.62 Total: -90.29 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.66 Total: -16.90 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.56 Total: 43.96 kcal Total: -66.45 4.72 -61.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990376.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.276 kcal (2) G-P(sol) polarization free energy of solvation -66.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds