Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33692 * 126.27817 * 2 1 4 4 C 1.30610 * 108.99580 * 180.12044 * 3 2 1 5 5 C 1.50698 * 125.42359 * 179.86987 * 4 3 2 6 6 C 1.52997 * 109.47144 * 59.69018 * 5 4 3 7 7 C 1.53006 * 109.47086 * 299.69188 * 5 4 3 8 8 O 1.33660 * 109.15711 * 359.60544 * 4 3 2 9 9 C 1.35348 * 107.68580 * 0.23996 * 8 4 3 10 10 C 1.46724 * 126.64760 * 179.97438 * 9 8 4 11 11 O 1.21684 * 119.99793 * 180.02562 * 10 9 8 12 12 N 1.34769 * 119.99638 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99790 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47417 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46963 * 299.99919 * 14 13 12 16 16 C 1.53004 * 109.46950 * 59.99684 * 14 13 12 17 17 C 1.50700 * 109.47558 * 179.97438 * 14 13 12 18 18 H 1.07998 * 119.99531 * 1.34292 * 17 14 13 19 19 C 1.37878 * 120.00131 * 181.34767 * 17 14 13 20 20 N 1.31514 * 119.99544 * 193.97579 * 19 17 14 21 21 Si 1.86800 * 119.99961 * 13.97574 * 19 17 14 22 22 H 1.48492 * 109.47166 * 84.54863 * 21 19 17 23 23 H 1.48501 * 109.46850 * 204.55268 * 21 19 17 24 24 H 1.48509 * 109.47041 * 324.54670 * 21 19 17 25 25 H 1.09003 * 109.47084 * 270.32533 * 1 2 3 26 26 H 1.09005 * 109.46901 * 30.31857 * 1 2 3 27 27 H 1.08993 * 109.47605 * 150.32202 * 1 2 3 28 28 H 1.09001 * 109.47861 * 179.69621 * 5 4 3 29 29 H 1.08999 * 109.47265 * 300.00204 * 6 5 4 30 30 H 1.09001 * 109.47451 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47258 * 60.00239 * 6 5 4 32 32 H 1.09001 * 109.47267 * 179.97438 * 7 5 4 33 33 H 1.08999 * 109.47109 * 299.99873 * 7 5 4 34 34 H 1.08999 * 109.47041 * 59.99968 * 7 5 4 35 35 H 0.96999 * 120.00326 * 0.02562 * 12 10 9 36 36 H 1.09009 * 109.47042 * 300.00087 * 13 12 10 37 37 H 1.08994 * 109.47352 * 59.99787 * 13 12 10 38 38 H 1.08999 * 109.46961 * 69.36730 * 15 14 13 39 39 H 1.09005 * 109.47089 * 189.36082 * 15 14 13 40 40 H 1.09002 * 109.47325 * 309.36946 * 15 14 13 41 41 H 1.08996 * 109.47072 * 60.00737 * 16 14 13 42 42 H 1.09008 * 109.46964 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.47207 * 299.99901 * 16 14 13 44 44 H 0.97001 * 119.99148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5452 0.6898 -0.0026 5 6 4.7440 1.6028 -0.0063 6 6 4.7116 2.4921 1.2383 7 6 4.7139 2.4791 -1.2602 8 8 3.5889 -0.6461 0.0044 9 6 2.3136 -1.0993 0.0061 10 6 1.8825 -2.5018 0.0127 11 8 0.6964 -2.7737 0.0132 12 7 2.8002 -3.4887 0.0182 13 6 2.3698 -4.8891 0.0242 14 6 3.5988 -5.8004 0.0303 15 6 4.4398 -5.5307 -1.2190 16 6 4.4362 -5.5188 1.2795 17 6 3.1561 -7.2409 0.0371 18 1 2.1037 -7.4824 0.0152 19 6 4.0945 -8.2504 0.0715 20 7 3.7393 -9.4878 -0.1973 21 14 5.8705 -7.8604 0.4997 22 1 6.0311 -7.8416 1.9758 23 1 6.7592 -8.8984 -0.0818 24 1 6.2330 -6.5313 -0.0547 25 1 -0.3633 0.0058 1.0277 26 1 -0.3633 0.8872 -0.5188 27 1 -0.3634 -0.8928 -0.5088 28 1 5.6558 1.0056 -0.0024 29 1 3.7999 3.0895 1.2344 30 1 5.5785 3.1529 1.2354 31 1 4.7331 1.8679 2.1315 32 1 5.5807 3.1399 -1.2626 33 1 4.7370 1.8456 -2.1468 34 1 3.8021 3.0765 -1.2641 35 1 3.7456 -3.2719 0.0182 36 1 1.7709 -5.0813 0.9145 37 1 1.7728 -5.0895 -0.8654 38 1 4.8968 -4.5440 -1.1433 39 1 5.2203 -6.2872 -1.3018 40 1 3.8017 -5.5688 -2.1018 41 1 3.8371 -5.7110 2.1695 42 1 5.3120 -6.1678 1.2836 43 1 4.7565 -4.4769 1.2750 44 1 4.3997 -10.1979 -0.1734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458038584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -18.802648 kcal Electronic energy + Delta-G solvation = -24145.301795 eV Core-core repulsion = 20678.593101 eV Total energy + Delta-G solvation = -3466.708694 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.55023 -39.40776 -36.87673 -36.17983 -35.27639 -33.40875 -31.60670 -31.03517 -28.17427 -27.60285 -26.45289 -26.02015 -25.00793 -24.11596 -21.89434 -20.75293 -20.43600 -19.31277 -17.99481 -17.03919 -16.44269 -16.16812 -15.57434 -15.20163 -14.85162 -14.75317 -14.55812 -13.84286 -13.61762 -13.30779 -13.22273 -13.12112 -12.95080 -12.67451 -12.59034 -12.43171 -12.25685 -12.09165 -12.06539 -11.72030 -11.48126 -11.39936 -11.05054 -10.87298 -10.51183 -10.40216 -10.22162 -10.11988 -9.92229 -9.18265 -9.00522 -8.73736 -8.60688 -8.49492 -6.18776 -4.16512 0.78208 2.27739 2.30183 3.20992 3.21911 3.28288 3.35684 3.36600 3.72787 4.31924 4.42143 4.57412 4.59707 4.71439 4.93011 5.11796 5.23128 5.26143 5.34166 5.41140 5.48706 5.53583 5.61082 5.69773 5.75531 5.80785 5.82568 5.91686 5.97537 5.99561 6.25134 6.30391 6.39141 6.45619 6.54980 6.61693 6.63656 6.87503 7.14263 7.36238 7.42880 7.66443 7.73969 8.26411 8.41089 8.86130 9.44873 10.94192 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.003798 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.746737 B = 7371.137328 C = 8304.478833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.073 3.927 3 N -0.483 5.483 4 C 0.217 3.783 5 C 0.000 4.000 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.188 6.188 9 C -0.111 4.111 10 C 0.599 3.401 11 O -0.520 6.520 12 N -0.707 5.707 13 C 0.140 3.860 14 C 0.029 3.971 15 C -0.143 4.143 16 C -0.149 4.149 17 C -0.515 4.515 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.890 5.890 21 Si 0.884 3.116 22 H -0.285 1.285 23 H -0.304 1.304 24 H -0.249 1.249 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.096 0.904 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.021 0.979 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.029 0.971 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.107 23.301 0.358 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.051 4.051 3 N -0.212 5.212 4 C 0.011 3.989 5 C -0.019 4.019 6 C -0.201 4.201 7 C -0.201 4.201 8 O -0.074 6.074 9 C -0.166 4.166 10 C 0.384 3.616 11 O -0.398 6.398 12 N -0.357 5.357 13 C 0.018 3.982 14 C 0.027 3.973 15 C -0.201 4.201 16 C -0.206 4.206 17 C -0.552 4.552 18 H 0.096 0.904 19 C -0.126 4.126 20 N -0.526 5.526 21 Si 0.717 3.283 22 H -0.213 1.213 23 H -0.233 1.233 24 H -0.175 1.175 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.237 0.763 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.177 23.434 0.337 23.538 hybrid contribution 1.791 -0.653 0.344 1.937 sum 3.968 22.782 0.680 23.135 Atomic orbital electron populations 1.20368 0.85310 1.04282 1.03615 1.22041 0.98305 0.86372 0.98352 1.70236 1.00253 1.31069 1.19690 1.26502 0.95644 0.79267 0.97479 1.19751 0.90518 0.93153 0.98499 1.21845 1.03466 0.99321 0.95505 1.21847 1.03460 0.99428 0.95405 1.84461 1.30004 1.23634 1.69307 1.23192 0.81060 0.96723 1.15589 1.16363 0.86086 0.81188 0.78008 1.90842 1.15701 1.81757 1.51536 1.46273 1.09564 1.07545 1.72286 1.21664 0.98252 0.76213 1.02042 1.18732 0.91059 0.95895 0.91583 1.22310 1.00073 0.98415 0.99267 1.22375 0.99929 0.97946 1.00319 1.20690 0.95357 0.86852 1.52340 0.90411 1.24962 0.98646 0.94878 0.94144 1.69948 1.35148 1.00569 1.46935 0.87305 0.85412 0.77243 0.78342 1.21290 1.23302 1.17547 0.90146 0.90712 0.88511 0.88145 0.91078 0.90815 0.92124 0.90815 0.92100 0.91087 0.76335 0.91383 0.91277 0.95986 0.92377 0.93301 0.92665 0.93909 0.95247 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.87 36.01 0.36 -0.61 16 2 C 0.07 1.06 7.16 -82.46 -0.59 0.47 16 3 N -0.48 -6.52 11.26 -7.07 -0.08 -6.60 16 4 C 0.22 2.64 6.82 -12.80 -0.09 2.55 16 5 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 6 C -0.14 -0.97 9.17 37.16 0.34 -0.63 16 7 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 8 O -0.19 -2.63 10.57 4.42 0.05 -2.58 16 9 C -0.11 -1.71 7.18 -36.84 -0.26 -1.98 16 10 C 0.60 10.35 7.79 -12.84 -0.10 10.25 16 11 O -0.52 -10.01 14.79 5.20 0.08 -9.94 16 12 N -0.71 -12.10 5.00 -61.60 -0.31 -12.41 16 13 C 0.14 2.77 4.49 -4.04 -0.02 2.75 16 14 C 0.03 0.62 0.50 -155.66 -0.08 0.54 16 15 C -0.14 -2.92 7.53 37.16 0.28 -2.64 16 16 C -0.15 -3.02 7.52 37.16 0.28 -2.74 16 17 C -0.51 -13.65 8.62 -34.44 -0.30 -13.95 16 18 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 19 C 0.08 2.11 5.32 -17.82 -0.09 2.01 16 20 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 21 Si 0.88 20.92 22.79 -169.99 -3.87 17.05 16 22 H -0.29 -6.73 7.10 56.52 0.40 -6.33 16 23 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.25 -5.38 4.65 56.52 0.26 -5.12 16 25 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 1.30 6.46 -51.93 -0.34 0.96 16 28 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.40 6.31 6.05 -40.82 -0.25 6.06 16 36 H 0.07 1.39 8.14 -51.92 -0.42 0.97 16 37 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.02 0.38 7.13 -51.93 -0.37 0.01 16 39 H 0.06 1.25 4.30 -51.93 -0.22 1.03 16 40 H 0.05 0.98 8.12 -51.93 -0.42 0.56 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.04 0.92 2.25 -51.92 -0.12 0.80 16 43 H 0.03 0.50 6.86 -51.93 -0.36 0.15 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 346.96 15.07 5.23 5.23 Total: -1.00 -30.62 346.96 -5.22 -35.83 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -6.84 Total: 3.91 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -0.24 Total: -4.90 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.39 Total: -44.60 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.12 Total: -12.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -3.87 Total: 17.05 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.62 -5.22 -35.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.031 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds