Wall clock time and date at job start Tue Mar 31 2020 06:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33692 * 126.27817 * 2 1 4 4 C 1.30610 * 108.99580 * 180.12044 * 3 2 1 5 5 C 1.50698 * 125.42359 * 179.86987 * 4 3 2 6 6 C 1.52997 * 109.47144 * 59.69018 * 5 4 3 7 7 C 1.53006 * 109.47086 * 299.69188 * 5 4 3 8 8 O 1.33660 * 109.15711 * 359.60544 * 4 3 2 9 9 C 1.35348 * 107.68580 * 0.23996 * 8 4 3 10 10 C 1.46724 * 126.64760 * 179.97438 * 9 8 4 11 11 O 1.21684 * 119.99793 * 180.02562 * 10 9 8 12 12 N 1.34769 * 119.99638 * 0.02562 * 10 9 8 13 13 C 1.46503 * 119.99790 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47417 * 180.02562 * 13 12 10 15 15 C 1.53001 * 109.46963 * 299.99919 * 14 13 12 16 16 C 1.53004 * 109.46950 * 59.99684 * 14 13 12 17 17 C 1.50700 * 109.47558 * 179.97438 * 14 13 12 18 18 H 1.07998 * 119.99531 * 1.34292 * 17 14 13 19 19 C 1.37878 * 120.00131 * 181.34767 * 17 14 13 20 20 N 1.31514 * 119.99544 * 193.97579 * 19 17 14 21 21 Si 1.86800 * 119.99961 * 13.97574 * 19 17 14 22 22 H 1.48492 * 109.47166 * 84.54863 * 21 19 17 23 23 H 1.48501 * 109.46850 * 204.55268 * 21 19 17 24 24 H 1.48509 * 109.47041 * 324.54670 * 21 19 17 25 25 H 1.09003 * 109.47084 * 270.32533 * 1 2 3 26 26 H 1.09005 * 109.46901 * 30.31857 * 1 2 3 27 27 H 1.08993 * 109.47605 * 150.32202 * 1 2 3 28 28 H 1.09001 * 109.47861 * 179.69621 * 5 4 3 29 29 H 1.08999 * 109.47265 * 300.00204 * 6 5 4 30 30 H 1.09001 * 109.47451 * 180.02562 * 6 5 4 31 31 H 1.08996 * 109.47258 * 60.00239 * 6 5 4 32 32 H 1.09001 * 109.47267 * 179.97438 * 7 5 4 33 33 H 1.08999 * 109.47109 * 299.99873 * 7 5 4 34 34 H 1.08999 * 109.47041 * 59.99968 * 7 5 4 35 35 H 0.96999 * 120.00326 * 0.02562 * 12 10 9 36 36 H 1.09009 * 109.47042 * 300.00087 * 13 12 10 37 37 H 1.08994 * 109.47352 * 59.99787 * 13 12 10 38 38 H 1.08999 * 109.46961 * 69.36730 * 15 14 13 39 39 H 1.09005 * 109.47089 * 189.36082 * 15 14 13 40 40 H 1.09002 * 109.47325 * 309.36946 * 15 14 13 41 41 H 1.08996 * 109.47072 * 60.00737 * 16 14 13 42 42 H 1.09008 * 109.46964 * 180.02562 * 16 14 13 43 43 H 1.09000 * 109.47207 * 299.99901 * 16 14 13 44 44 H 0.97001 * 119.99148 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2981 1.0778 0.0000 4 6 3.5452 0.6898 -0.0026 5 6 4.7440 1.6028 -0.0063 6 6 4.7116 2.4921 1.2383 7 6 4.7139 2.4791 -1.2602 8 8 3.5889 -0.6461 0.0044 9 6 2.3136 -1.0993 0.0061 10 6 1.8825 -2.5018 0.0127 11 8 0.6964 -2.7737 0.0132 12 7 2.8002 -3.4887 0.0182 13 6 2.3698 -4.8891 0.0242 14 6 3.5988 -5.8004 0.0303 15 6 4.4398 -5.5307 -1.2190 16 6 4.4362 -5.5188 1.2795 17 6 3.1561 -7.2409 0.0371 18 1 2.1037 -7.4824 0.0152 19 6 4.0945 -8.2504 0.0715 20 7 3.7393 -9.4878 -0.1973 21 14 5.8705 -7.8604 0.4997 22 1 6.0311 -7.8416 1.9758 23 1 6.7592 -8.8984 -0.0818 24 1 6.2330 -6.5313 -0.0547 25 1 -0.3633 0.0058 1.0277 26 1 -0.3633 0.8872 -0.5188 27 1 -0.3634 -0.8928 -0.5088 28 1 5.6558 1.0056 -0.0024 29 1 3.7999 3.0895 1.2344 30 1 5.5785 3.1529 1.2354 31 1 4.7331 1.8679 2.1315 32 1 5.5807 3.1399 -1.2626 33 1 4.7370 1.8456 -2.1468 34 1 3.8021 3.0765 -1.2641 35 1 3.7456 -3.2719 0.0182 36 1 1.7709 -5.0813 0.9145 37 1 1.7728 -5.0895 -0.8654 38 1 4.8968 -4.5440 -1.1433 39 1 5.2203 -6.2872 -1.3018 40 1 3.8017 -5.5688 -2.1018 41 1 3.8371 -5.7110 2.1695 42 1 5.3120 -6.1678 1.2836 43 1 4.7565 -4.4769 1.2750 44 1 4.3997 -10.1979 -0.1734 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458038584.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:07 Heat of formation + Delta-G solvation = -41.629829 kcal Electronic energy + Delta-G solvation = -24146.291656 eV Core-core repulsion = 20678.593101 eV Total energy + Delta-G solvation = -3467.698555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.59223 -40.83348 -38.52117 -36.92251 -36.27296 -35.05910 -33.51479 -32.06949 -29.35940 -28.09940 -28.07382 -27.49317 -26.90113 -25.15295 -23.05090 -21.86281 -21.38766 -21.00752 -19.38140 -18.10645 -18.09259 -17.38818 -17.12599 -16.81057 -16.29221 -15.70399 -15.47718 -15.07958 -14.98825 -14.72735 -14.44781 -14.31028 -14.17791 -14.05694 -14.02946 -13.79266 -13.33562 -13.08395 -13.01365 -12.71813 -12.41863 -12.31553 -12.22097 -12.19554 -11.99457 -11.97756 -11.81329 -11.80540 -11.32141 -11.07216 -10.64077 -10.43911 -10.31933 -9.84516 -8.31565 -6.33448 -0.33263 1.23029 1.26305 1.35735 1.36534 1.49546 1.92523 2.09482 2.33316 2.76571 3.04343 3.57172 3.58145 3.92932 3.98553 4.03845 4.12656 4.27446 4.35323 4.37854 4.43247 4.65341 4.69652 4.75517 4.77271 4.79999 4.80043 4.81821 4.88743 4.90996 4.92709 5.00899 5.05420 5.09102 5.21173 5.29755 5.31671 5.39404 5.45366 5.67032 5.74302 6.23028 6.30771 6.51849 6.70610 6.93640 7.31523 8.85395 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021163 B = 0.003798 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.746737 B = 7371.137328 C = 8304.478833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.077 3.923 3 N -0.498 5.498 4 C 0.232 3.768 5 C -0.003 4.003 6 C -0.140 4.140 7 C -0.140 4.140 8 O -0.191 6.191 9 C -0.138 4.138 10 C 0.603 3.397 11 O -0.547 6.547 12 N -0.699 5.699 13 C 0.155 3.845 14 C 0.028 3.972 15 C -0.142 4.142 16 C -0.148 4.148 17 C -0.518 4.518 18 H 0.033 0.967 19 C 0.019 3.981 20 N -0.944 5.944 21 Si 0.942 3.058 22 H -0.281 1.281 23 H -0.314 1.314 24 H -0.207 1.207 25 H 0.089 0.911 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.411 0.589 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.067 0.933 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 26.873 0.647 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.047 4.047 3 N -0.228 5.228 4 C 0.026 3.974 5 C -0.022 4.022 6 C -0.198 4.198 7 C -0.198 4.198 8 O -0.078 6.078 9 C -0.193 4.193 10 C 0.389 3.611 11 O -0.428 6.428 12 N -0.350 5.350 13 C 0.032 3.968 14 C 0.026 3.974 15 C -0.199 4.199 16 C -0.205 4.205 17 C -0.556 4.556 18 H 0.051 0.949 19 C -0.178 4.178 20 N -0.583 5.583 21 Si 0.772 3.228 22 H -0.208 1.208 23 H -0.243 1.243 24 H -0.131 1.131 25 H 0.108 0.892 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.139 0.861 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.073 0.927 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.248 0.752 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.086 0.914 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.856 27.059 0.626 27.498 hybrid contribution 0.853 -1.656 0.235 1.877 sum 5.708 25.403 0.860 26.051 Atomic orbital electron populations 1.20406 0.84337 1.04478 1.04250 1.22412 0.99199 0.86446 0.96634 1.70311 1.00848 1.30645 1.20986 1.27603 0.96593 0.78964 0.94209 1.20162 0.89389 0.92997 0.99684 1.21853 1.04277 0.99194 0.94453 1.21856 1.04276 0.99311 0.94345 1.84449 1.29149 1.24484 1.69740 1.22706 0.82034 0.95771 1.18777 1.16492 0.85622 0.81912 0.77066 1.90827 1.16829 1.82491 1.52616 1.45997 1.10094 1.06219 1.72656 1.21232 0.97187 0.77677 1.00691 1.18664 0.92245 0.92989 0.93471 1.22232 0.99498 1.00157 0.98026 1.22308 0.99103 1.00193 0.98882 1.20987 0.93410 0.90044 1.51177 0.94913 1.25821 1.03574 0.94434 0.94019 1.70104 1.36876 1.01993 1.49325 0.86362 0.79483 0.78748 0.78253 1.20837 1.24322 1.13104 0.89226 0.88829 0.89890 0.86109 0.92139 0.87985 0.92733 0.87983 0.92727 0.92140 0.75152 0.92752 0.92940 0.92164 0.93382 0.93803 0.93150 0.94493 0.91409 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.84 9.87 71.24 0.70 -1.14 16 2 C 0.08 2.13 7.16 41.83 0.30 2.43 16 3 N -0.50 -12.52 11.26 -291.07 -3.28 -15.79 16 4 C 0.23 5.05 6.82 88.29 0.60 5.65 16 5 C 0.00 -0.04 3.39 -11.54 -0.04 -0.08 16 6 C -0.14 -1.41 9.17 71.98 0.66 -0.75 16 7 C -0.14 -1.41 9.18 71.98 0.66 -0.75 16 8 O -0.19 -4.89 10.57 -7.09 -0.07 -4.96 16 9 C -0.14 -4.09 7.18 24.05 0.17 -3.92 16 10 C 0.60 20.43 7.79 86.46 0.67 21.10 16 11 O -0.55 -21.29 14.79 -4.30 -0.06 -21.36 16 12 N -0.70 -22.90 5.00 -467.04 -2.34 -25.24 16 13 C 0.16 6.14 4.49 86.38 0.39 6.52 16 14 C 0.03 1.16 0.50 -52.93 -0.03 1.13 16 15 C -0.14 -5.42 7.53 71.98 0.54 -4.87 16 16 C -0.15 -5.58 7.52 71.98 0.54 -5.04 16 17 C -0.52 -28.26 8.62 25.60 0.22 -28.04 16 18 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 19 C 0.02 1.08 5.32 84.65 0.45 1.53 16 20 N -0.94 -58.09 13.96 21.45 0.30 -57.79 16 21 Si 0.94 42.42 22.79 68.60 1.56 43.98 16 22 H -0.28 -12.41 7.10 99.48 0.71 -11.70 16 23 H -0.31 -14.55 7.11 99.48 0.71 -13.84 16 24 H -0.21 -7.93 4.65 99.48 0.46 -7.46 16 25 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.08 2.22 6.46 -2.39 -0.02 2.21 16 28 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.41 11.66 6.05 -92.71 -0.56 11.10 16 36 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 37 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 1.84 7.13 -2.39 -0.02 1.82 16 39 H 0.05 1.93 4.30 -2.38 -0.01 1.92 16 40 H 0.04 1.69 8.12 -2.39 -0.02 1.67 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.44 2.25 -2.38 -0.01 1.44 16 43 H 0.07 2.03 6.86 -2.39 -0.02 2.01 16 44 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -69.01 346.96 2.17 -66.85 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.20 Total: 20.52 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: 5.85 Total: -6.21 kcal Atomic # 7 Polarization: -93.51 SS G_CDS: -5.31 Total: -98.82 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -0.14 Total: -26.32 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.56 Total: 43.98 kcal Total: -69.01 2.17 -66.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038584.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.218 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds