Wall clock time and date at job start Tue Mar 31 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 C 1.50707 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.30618 * 125.42477 * 89.97854 * 4 3 2 6 6 C 1.33693 * 108.99164 * 179.78809 * 5 4 3 7 7 C 1.50704 * 126.26848 * 180.25757 * 6 5 4 8 8 C 1.36335 * 107.45490 * 0.36509 * 6 5 4 9 9 C 1.46725 * 126.64382 * 179.90053 * 8 6 5 10 10 O 1.21683 * 119.99962 * 359.71329 * 9 8 6 11 11 N 1.34777 * 119.99832 * 179.71004 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72438 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 13 21 21 H 1.48491 * 109.47115 * 89.99974 * 20 18 16 22 22 H 1.48509 * 109.46780 * 210.00159 * 20 18 16 23 23 H 1.48497 * 109.46888 * 329.99916 * 20 18 16 24 24 O 1.33663 * 125.41666 * 269.99463 * 4 3 2 25 25 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47194 * 300.00063 * 1 2 3 27 27 H 1.08996 * 109.47607 * 60.00400 * 1 2 3 28 28 H 1.09003 * 109.47106 * 239.99452 * 2 1 3 29 29 H 1.09001 * 109.47517 * 120.00081 * 2 1 3 30 30 H 1.08992 * 109.47359 * 60.00169 * 3 2 1 31 31 H 1.09001 * 109.47091 * 299.99913 * 3 2 1 32 32 H 1.09002 * 109.46788 * 270.12865 * 7 6 5 33 33 H 1.08994 * 109.47235 * 30.13179 * 7 6 5 34 34 H 1.09002 * 109.46931 * 150.13323 * 7 6 5 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 37 37 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 38 38 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 39 39 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 41 41 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 42 42 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 43 43 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 44 44 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3037 1.4422 -1.0653 6 6 5.5861 1.4469 -0.6877 7 6 6.7846 1.4538 -1.6014 8 6 5.6110 1.4419 0.6754 9 6 6.8041 1.4424 1.5295 10 8 7.9122 1.4424 1.0268 11 7 6.6726 1.4429 2.8708 12 6 7.8639 1.4373 3.7236 13 6 7.4389 1.4321 5.1934 14 6 6.6067 2.6818 5.4880 15 6 6.6021 0.1832 5.4779 16 6 8.6643 1.4270 6.0706 17 1 9.6478 1.4269 5.6243 18 6 8.5298 1.4224 7.4427 19 7 7.3322 1.4219 7.9862 20 14 10.0488 1.4153 8.5301 21 1 10.4543 2.8133 8.8232 22 1 9.7440 0.7112 9.8016 23 1 11.1555 0.7154 7.8297 24 8 4.3221 1.4423 1.0883 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 7.0764 0.4277 -1.8255 33 1 6.5324 1.9703 -2.5274 34 1 7.6116 1.9681 -1.1120 35 1 5.7893 1.4426 3.2717 36 1 8.4568 0.5470 3.5137 37 1 8.4601 2.3269 3.5209 38 1 5.7204 2.6859 4.8536 39 1 6.3036 2.6779 6.5350 40 1 7.2029 3.5714 5.2852 41 1 7.1951 -0.7070 5.2681 42 1 6.2990 0.1798 6.5250 43 1 5.7158 0.1875 4.8435 44 1 7.2376 1.4191 8.9515 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458038601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:26 Heat of formation + Delta-G solvation = -41.682895 kcal Electronic energy + Delta-G solvation = -23853.719880 eV Core-core repulsion = 20386.019024 eV Total energy + Delta-G solvation = -3467.700856 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.46336 -39.25467 -36.51850 -35.69745 -35.25298 -33.35793 -31.67904 -30.89462 -28.59913 -27.52829 -25.76897 -25.57398 -24.80818 -22.83592 -21.73325 -21.38815 -20.37602 -18.90935 -18.00769 -16.95267 -16.12290 -15.87075 -15.55335 -15.18672 -14.77823 -14.70240 -14.49864 -13.69281 -13.65507 -13.26805 -13.05124 -12.94578 -12.82689 -12.60296 -12.33955 -12.24827 -11.96430 -11.70943 -11.43975 -11.24497 -11.12852 -10.98360 -10.90474 -10.86380 -10.72716 -10.43698 -10.25134 -9.90094 -9.68863 -9.37382 -8.91533 -8.83930 -8.50451 -8.37134 -6.05383 -4.15900 0.85553 2.34942 2.39356 3.26445 3.31388 3.33531 3.36696 3.50115 3.81391 4.37372 4.56239 4.58506 4.67139 4.80143 5.01434 5.14345 5.21483 5.25625 5.38998 5.45876 5.53640 5.65562 5.67965 5.76144 5.87132 5.90403 5.93567 6.13541 6.23893 6.29807 6.44623 6.65447 6.78829 6.84799 6.90295 6.96610 7.29578 7.50452 7.51098 7.65677 7.88070 7.96189 8.08879 8.31444 8.42661 8.84474 9.50171 10.96099 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.003471 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.950792 B = 8063.839162 C = 9173.400364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.026 4.026 4 C 0.213 3.787 5 N -0.487 5.487 6 C 0.070 3.930 7 C -0.078 4.078 8 C -0.107 4.107 9 C 0.596 3.404 10 O -0.525 6.525 11 N -0.701 5.701 12 C 0.130 3.870 13 C 0.056 3.944 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.507 4.507 17 H 0.059 0.941 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 O -0.185 6.185 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.403 0.597 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.005 0.995 39 H 0.087 0.913 40 H 0.028 0.972 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.005 0.995 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.032 -0.760 -14.366 18.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.064 4.064 4 C 0.007 3.993 5 N -0.217 5.217 6 C -0.054 4.054 7 C -0.135 4.135 8 C -0.162 4.162 9 C 0.381 3.619 10 O -0.404 6.404 11 N -0.350 5.350 12 C 0.008 3.992 13 C 0.055 3.945 14 C -0.190 4.190 15 C -0.189 4.189 16 C -0.546 4.546 17 H 0.077 0.923 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 O -0.072 6.072 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.239 0.761 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.024 0.976 39 H 0.105 0.895 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.024 0.976 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.560 -0.761 -15.024 18.972 hybrid contribution 0.555 0.005 1.545 1.642 sum -11.005 -0.756 -13.479 17.418 Atomic orbital electron populations 1.21747 0.94462 1.02364 1.02234 1.21549 0.96624 0.94525 1.03430 1.20272 0.80752 0.99797 1.05553 1.26472 0.96321 0.97681 0.78781 1.70298 1.01626 1.19875 1.29945 1.22021 0.93341 0.98659 0.91359 1.20357 0.92349 1.03578 0.97214 1.23239 0.82425 1.15161 0.95384 1.16405 0.85155 0.78164 0.82217 1.90822 1.23572 1.52009 1.73997 1.46291 1.12325 1.71557 1.04811 1.21878 0.84952 1.00989 0.91405 1.18370 0.95352 0.92943 0.87789 1.21844 0.96379 0.97549 1.03186 1.21842 0.96370 0.97562 1.03170 1.20965 0.91762 1.51087 0.90759 0.92323 1.24881 0.95949 0.94709 0.97936 1.69801 1.21222 1.50415 1.10934 0.86556 0.83205 0.78124 0.79904 1.20689 1.21248 1.19871 1.84468 1.16290 1.69207 1.37215 0.92105 0.92224 0.92322 0.90987 0.91143 0.88446 0.87408 0.90199 0.90757 0.88551 0.76111 0.92130 0.92123 0.97559 0.89465 0.95331 0.95333 0.89473 0.97555 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.15 0.37 -0.48 16 2 C -0.12 -0.92 5.92 -26.74 -0.16 -1.08 16 3 C -0.03 -0.21 5.84 -27.88 -0.16 -0.37 16 4 C 0.21 2.73 7.57 -12.79 -0.10 2.63 16 5 N -0.49 -7.01 11.26 -7.07 -0.08 -7.09 16 6 C 0.07 1.07 7.16 -82.47 -0.59 0.48 16 7 C -0.08 -1.01 9.87 36.01 0.36 -0.65 16 8 C -0.11 -1.76 7.18 -36.84 -0.26 -2.02 16 9 C 0.60 10.97 7.79 -12.83 -0.10 10.87 16 10 O -0.52 -10.58 14.80 5.20 0.08 -10.50 16 11 N -0.70 -13.01 4.95 -61.60 -0.31 -13.32 16 12 C 0.13 2.72 4.50 -4.04 -0.02 2.71 16 13 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 14 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 15 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 16 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.07 1.74 5.15 -17.82 -0.09 1.64 16 19 N -0.89 -23.40 9.35 55.43 0.52 -22.88 16 20 Si 0.89 20.53 29.54 -169.99 -5.02 15.51 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 O -0.19 -2.76 10.57 4.41 0.05 -2.71 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.11 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.10 1.35 6.47 -51.93 -0.34 1.02 16 35 H 0.40 7.09 5.96 -40.82 -0.24 6.85 16 36 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 39 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 43 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 44 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 357.55 15.07 5.39 5.39 Total: -1.00 -28.52 357.55 -6.85 -35.37 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -6.96 Total: 4.05 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -0.51 Total: -3.82 kcal Atomic # 7 Polarization: -43.42 SS G_CDS: 0.13 Total: -43.29 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.12 Total: -13.22 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.52 -6.85 -35.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.311 kcal (2) G-P(sol) polarization free energy of solvation -28.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds