Wall clock time and date at job start Tue Mar 31 2020 06:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52995 * 109.47251 * 2 1 4 4 C 1.50707 * 109.47124 * 180.02562 * 3 2 1 5 5 N 1.30618 * 125.42477 * 89.97854 * 4 3 2 6 6 C 1.33693 * 108.99164 * 179.78809 * 5 4 3 7 7 C 1.50704 * 126.26848 * 180.25757 * 6 5 4 8 8 C 1.36335 * 107.45490 * 0.36509 * 6 5 4 9 9 C 1.46725 * 126.64382 * 179.90053 * 8 6 5 10 10 O 1.21683 * 119.99962 * 359.71329 * 9 8 6 11 11 N 1.34777 * 119.99832 * 179.71004 * 9 8 6 12 12 C 1.46499 * 119.99665 * 179.72438 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.27868 * 12 11 9 14 14 C 1.52998 * 109.46876 * 299.99984 * 13 12 11 15 15 C 1.53005 * 109.46795 * 60.00011 * 13 12 11 16 16 C 1.50700 * 109.47208 * 180.02562 * 13 12 11 17 17 H 1.08002 * 119.99770 * 359.97438 * 16 13 12 18 18 C 1.37876 * 119.99720 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00513 * 0.02562 * 18 16 13 20 20 Si 1.86809 * 119.99651 * 179.97438 * 18 16 13 21 21 H 1.48491 * 109.47115 * 89.99974 * 20 18 16 22 22 H 1.48509 * 109.46780 * 210.00159 * 20 18 16 23 23 H 1.48497 * 109.46888 * 329.99916 * 20 18 16 24 24 O 1.33663 * 125.41666 * 269.99463 * 4 3 2 25 25 H 1.09001 * 109.47270 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47194 * 300.00063 * 1 2 3 27 27 H 1.08996 * 109.47607 * 60.00400 * 1 2 3 28 28 H 1.09003 * 109.47106 * 239.99452 * 2 1 3 29 29 H 1.09001 * 109.47517 * 120.00081 * 2 1 3 30 30 H 1.08992 * 109.47359 * 60.00169 * 3 2 1 31 31 H 1.09001 * 109.47091 * 299.99913 * 3 2 1 32 32 H 1.09002 * 109.46788 * 270.12865 * 7 6 5 33 33 H 1.08994 * 109.47235 * 30.13179 * 7 6 5 34 34 H 1.09002 * 109.46931 * 150.13323 * 7 6 5 35 35 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 36 36 H 1.09009 * 109.47454 * 300.27637 * 12 11 9 37 37 H 1.08998 * 109.47492 * 60.27932 * 12 11 9 38 38 H 1.08996 * 109.47009 * 60.00253 * 14 13 12 39 39 H 1.09004 * 109.46783 * 179.97438 * 14 13 12 40 40 H 1.08998 * 109.47156 * 300.00070 * 14 13 12 41 41 H 1.09000 * 109.47011 * 60.00556 * 15 13 12 42 42 H 1.09004 * 109.46658 * 180.02562 * 15 13 12 43 43 H 1.08996 * 109.47069 * 299.99740 * 15 13 12 44 44 H 0.96999 * 120.00239 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 7 4.3037 1.4422 -1.0653 6 6 5.5861 1.4469 -0.6877 7 6 6.7846 1.4538 -1.6014 8 6 5.6110 1.4419 0.6754 9 6 6.8041 1.4424 1.5295 10 8 7.9122 1.4424 1.0268 11 7 6.6726 1.4429 2.8708 12 6 7.8639 1.4373 3.7236 13 6 7.4389 1.4321 5.1934 14 6 6.6067 2.6818 5.4880 15 6 6.6021 0.1832 5.4779 16 6 8.6643 1.4270 6.0706 17 1 9.6478 1.4269 5.6243 18 6 8.5298 1.4224 7.4427 19 7 7.3322 1.4219 7.9862 20 14 10.0488 1.4153 8.5301 21 1 10.4543 2.8133 8.8232 22 1 9.7440 0.7112 9.8016 23 1 11.1555 0.7154 7.8297 24 8 4.3221 1.4423 1.0883 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 7.0764 0.4277 -1.8255 33 1 6.5324 1.9703 -2.5274 34 1 7.6116 1.9681 -1.1120 35 1 5.7893 1.4426 3.2717 36 1 8.4568 0.5470 3.5137 37 1 8.4601 2.3269 3.5209 38 1 5.7204 2.6859 4.8536 39 1 6.3036 2.6779 6.5350 40 1 7.2029 3.5714 5.2852 41 1 7.1951 -0.7070 5.2681 42 1 6.2990 0.1798 6.5250 43 1 5.7158 0.1875 4.8435 44 1 7.2376 1.4191 8.9515 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458038601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:25 Heat of formation + Delta-G solvation = -59.635824 kcal Electronic energy + Delta-G solvation = -23854.498377 eV Core-core repulsion = 20386.019024 eV Total energy + Delta-G solvation = -3468.479354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.58307 -40.75774 -38.24293 -36.58662 -36.19298 -35.05388 -32.96034 -32.46514 -29.49738 -28.66619 -27.61145 -27.40651 -26.44674 -23.74983 -22.92454 -22.24349 -21.63275 -20.67567 -19.44964 -18.09349 -17.83749 -17.09175 -16.92622 -16.56098 -16.20551 -16.00297 -15.56783 -15.15532 -14.80084 -14.63062 -14.31091 -14.24169 -14.10644 -14.02351 -13.33604 -13.23835 -13.14174 -13.07890 -12.72099 -12.68297 -12.60838 -12.32336 -12.29045 -12.15585 -12.04796 -11.96295 -11.63583 -11.53117 -11.42326 -11.13857 -10.73852 -10.43105 -10.25898 -9.82342 -8.03315 -6.19459 -0.33309 1.23974 1.27358 1.43182 1.46177 1.54232 1.93356 2.14372 2.47130 2.78287 3.20659 3.58185 3.61793 3.98473 4.03511 4.12573 4.34487 4.37270 4.46164 4.50664 4.64297 4.65919 4.66915 4.69247 4.82901 4.89249 4.91215 4.94101 5.00605 5.05732 5.14714 5.16929 5.23178 5.24437 5.30990 5.44729 5.47412 5.62696 5.66046 6.09774 6.16595 6.28743 6.40052 6.52188 6.83674 6.95809 7.48531 8.95939 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019925 B = 0.003471 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.950792 B = 8063.839162 C = 9173.400364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.120 4.120 3 C -0.027 4.027 4 C 0.231 3.769 5 N -0.504 5.504 6 C 0.077 3.923 7 C -0.077 4.077 8 C -0.139 4.139 9 C 0.600 3.400 10 O -0.548 6.548 11 N -0.698 5.698 12 C 0.146 3.854 13 C 0.052 3.948 14 C -0.122 4.122 15 C -0.121 4.121 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.028 3.972 19 N -0.900 5.900 20 Si 0.947 3.053 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.274 1.274 24 O -0.192 6.192 25 H 0.062 0.938 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.117 0.883 31 H 0.128 0.872 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.408 0.592 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.030 0.970 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.021 0.979 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.621 -0.661 -15.403 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 C -0.064 4.064 4 C 0.025 3.975 5 N -0.234 5.234 6 C -0.047 4.047 7 C -0.134 4.134 8 C -0.193 4.193 9 C 0.386 3.614 10 O -0.429 6.429 11 N -0.348 5.348 12 C 0.023 3.977 13 C 0.051 3.949 14 C -0.179 4.179 15 C -0.179 4.179 16 C -0.567 4.567 17 H 0.067 0.933 18 C -0.172 4.172 19 N -0.538 5.538 20 Si 0.774 3.226 21 H -0.205 1.205 22 H -0.209 1.209 23 H -0.199 1.199 24 O -0.079 6.079 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.135 0.865 31 H 0.146 0.854 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.245 0.755 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.040 0.960 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.165 -0.663 -16.072 20.786 hybrid contribution 0.940 -0.033 1.782 2.016 sum -12.224 -0.696 -14.290 18.818 Atomic orbital electron populations 1.21725 0.92747 1.02828 1.03109 1.21520 0.97990 0.93712 1.02578 1.20651 0.77514 1.00715 1.07545 1.27560 0.97771 0.94236 0.77902 1.70380 1.01270 1.21295 1.30454 1.22423 0.94371 0.96642 0.91262 1.20414 0.91178 1.04297 0.97516 1.22767 0.82545 1.18668 0.95362 1.16539 0.85654 0.77201 0.81981 1.90802 1.24807 1.52950 1.74367 1.46091 1.11677 1.72139 1.04884 1.21477 0.85588 1.00006 0.90669 1.18364 0.94654 0.93355 0.88526 1.21685 0.97104 0.96978 1.02168 1.21682 0.97089 0.96996 1.02144 1.21254 0.92445 1.51397 0.91610 0.93267 1.25468 0.98151 0.94603 0.98945 1.69908 1.22327 1.50574 1.11025 0.85730 0.80509 0.77989 0.78407 1.20496 1.20934 1.19919 1.84461 1.15828 1.69695 1.37964 0.91909 0.91554 0.91251 0.91754 0.92176 0.86459 0.85362 0.89188 0.88692 0.89833 0.75460 0.93189 0.93132 0.95100 0.91707 0.95981 0.95996 0.91717 0.95110 0.93001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.12 -1.51 5.92 30.59 0.18 -1.33 16 3 C -0.03 -0.36 5.84 29.85 0.17 -0.18 16 4 C 0.23 5.42 7.57 88.29 0.67 6.09 16 5 N -0.50 -13.58 11.26 -291.05 -3.28 -16.85 16 6 C 0.08 2.27 7.16 41.83 0.30 2.57 16 7 C -0.08 -1.91 9.87 71.24 0.70 -1.21 16 8 C -0.14 -4.46 7.18 24.05 0.17 -4.28 16 9 C 0.60 21.98 7.79 86.46 0.67 22.65 16 10 O -0.55 -22.28 14.80 -4.29 -0.06 -22.35 16 11 N -0.70 -25.67 4.95 -467.03 -2.31 -27.98 16 12 C 0.15 6.16 4.50 86.38 0.39 6.54 16 13 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 14 C -0.12 -5.45 8.08 71.98 0.58 -4.87 16 15 C -0.12 -5.44 8.08 71.98 0.58 -4.86 16 16 C -0.53 -27.63 8.01 25.60 0.21 -27.43 16 17 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 18 C 0.03 1.47 5.15 84.65 0.44 1.91 16 19 N -0.90 -47.74 9.35 21.45 0.20 -47.54 16 20 Si 0.95 42.21 29.54 68.60 2.03 44.23 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 O -0.19 -5.45 10.57 -7.15 -0.08 -5.52 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.08 2.32 6.47 -2.39 -0.02 2.30 16 35 H 0.41 13.96 5.96 -92.71 -0.55 13.40 16 36 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 39 H 0.06 3.22 6.07 -2.38 -0.01 3.20 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 43 H 0.03 1.18 6.86 -2.39 -0.02 1.17 16 44 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 Total: -1.00 -60.68 357.55 2.69 -57.98 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.45 Total: 20.60 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: 5.75 Total: -2.58 kcal Atomic # 7 Polarization: -86.98 SS G_CDS: -5.39 Total: -92.37 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.14 Total: -27.87 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.23 kcal Total: -60.68 2.69 -57.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458038601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.655 kcal (2) G-P(sol) polarization free energy of solvation -60.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds