Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34264 * 126.52101 * 2 1 4 4 C 1.34049 * 108.22405 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.37479 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47466 * 60.02619 * 5 4 3 7 7 C 1.53006 * 109.47239 * 300.02331 * 5 4 3 8 8 N 1.29932 * 109.24450 * 0.24432 * 4 3 2 9 9 C 1.36067 * 108.47759 * 359.61403 * 8 4 3 10 10 C 1.47423 * 126.44940 * 180.15304 * 9 8 4 11 11 O 1.21614 * 119.99980 * 180.26890 * 10 9 8 12 12 N 1.34769 * 120.00079 * 0.26970 * 10 9 8 13 13 C 1.46503 * 120.00295 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47150 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47099 * 299.99536 * 14 13 12 16 16 C 1.52998 * 109.47094 * 59.99994 * 14 13 12 17 17 C 1.50705 * 109.46885 * 179.97438 * 14 13 12 18 18 H 1.07996 * 119.99893 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99861 * 180.02562 * 17 14 13 20 20 N 1.31507 * 119.99901 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99803 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47249 * 59.99295 * 21 19 17 23 23 H 1.48496 * 109.47118 * 179.97438 * 21 19 17 24 24 H 1.48511 * 109.46840 * 299.99521 * 21 19 17 25 25 H 1.08998 * 109.47466 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47106 * 119.97193 * 1 2 3 27 27 H 1.09003 * 109.46963 * 239.97219 * 1 2 3 28 28 H 1.08998 * 109.46862 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 30 30 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 31 31 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47002 * 60.00070 * 7 5 4 33 33 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47050 * 300.00336 * 7 5 4 35 35 H 0.97007 * 120.00173 * 0.02562 * 12 10 9 36 36 H 1.09006 * 109.46326 * 299.99927 * 13 12 10 37 37 H 1.08994 * 109.46945 * 59.99709 * 13 12 10 38 38 H 1.09001 * 109.47320 * 60.00486 * 15 14 13 39 39 H 1.09002 * 109.47084 * 180.02562 * 15 14 13 40 40 H 1.08994 * 109.47314 * 300.00546 * 15 14 13 41 41 H 1.08999 * 109.47410 * 60.00013 * 16 14 13 42 42 H 1.09002 * 109.47090 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.47478 * 299.99485 * 16 14 13 44 44 H 0.97004 * 120.00015 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5788 0.6582 -0.0006 5 6 4.7928 1.5509 -0.0013 6 6 4.7775 2.4339 1.2481 7 6 4.7755 2.4344 -1.2504 8 7 3.6002 -0.6410 -0.0062 9 6 2.3170 -1.0935 -0.0007 10 6 1.8855 -2.5032 -0.0009 11 8 0.7004 -2.7763 -0.0006 12 7 2.8042 -3.4892 -0.0016 13 6 2.3753 -4.8900 -0.0024 14 6 3.6053 -5.8000 -0.0024 15 6 4.4446 -5.5229 -1.2512 16 6 4.4438 -5.5240 1.2473 17 6 3.1641 -7.2410 -0.0026 18 1 2.1117 -7.4835 -0.0023 19 6 4.1040 -8.2497 -0.0021 20 7 5.3855 -7.9544 -0.0019 21 14 3.5571 -10.0359 -0.0031 22 1 2.7438 -10.3039 -1.2163 23 1 4.7509 -10.9191 -0.0029 24 1 2.7418 -10.3046 1.2088 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5134 -0.8902 27 1 -0.3633 -0.5143 0.8898 28 1 5.6943 0.9382 -0.0021 29 1 4.7898 1.8045 2.1379 30 1 3.8759 3.0466 1.2489 31 1 5.6559 3.0793 1.2477 32 1 3.8740 3.0471 -1.2496 33 1 5.6539 3.0797 -1.2512 34 1 4.7865 1.8053 -2.1405 35 1 3.7495 -3.2714 -0.0015 36 1 1.7777 -5.0875 0.8876 37 1 1.7776 -5.0865 -0.8924 38 1 4.7638 -4.4807 -1.2506 39 1 5.3207 -6.1715 -1.2514 40 1 3.8473 -5.7194 -2.1414 41 1 3.8458 -5.7214 2.1370 42 1 5.3198 -6.1726 1.2476 43 1 4.7629 -4.4819 1.2479 44 1 6.0468 -8.6641 -0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458046003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = -39.848750 kcal Electronic energy + Delta-G solvation = -24014.119854 eV Core-core repulsion = 20546.498532 eV Total energy + Delta-G solvation = -3467.621322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.46551 -39.08870 -36.37124 -35.98706 -34.73025 -33.21796 -31.98562 -30.80980 -27.56725 -27.50902 -25.66164 -25.64366 -25.02563 -23.49805 -22.48321 -21.02652 -19.71555 -18.68758 -17.60478 -16.96805 -16.20591 -15.73206 -15.40123 -14.95051 -14.66498 -14.61060 -14.46779 -13.72306 -13.65476 -13.17939 -13.02838 -12.86708 -12.74822 -12.61284 -12.56081 -12.13320 -11.95392 -11.66509 -11.38144 -11.37126 -11.15758 -11.14607 -10.80635 -10.73051 -10.70238 -10.33106 -10.18143 -9.75924 -9.58002 -9.26276 -8.82129 -8.75133 -8.39674 -8.24750 -5.98049 -4.08466 1.14611 2.09112 2.41096 3.32441 3.36654 3.39614 3.54186 3.63128 3.87003 4.42897 4.44994 4.67041 4.68960 4.83019 5.07172 5.15002 5.23990 5.28311 5.29232 5.41901 5.44507 5.50573 5.58313 5.82137 5.83669 5.83834 5.97808 6.09450 6.28086 6.35360 6.56711 6.79884 6.91948 6.99079 7.06523 7.07538 7.39680 7.50829 7.61275 7.73084 8.05749 8.11119 8.20247 8.42074 8.67093 8.91844 9.56956 11.03279 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003429 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.169273 B = 8164.817993 C = 8970.697910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.028 3.972 3 O -0.196 6.196 4 C 0.193 3.807 5 C 0.004 3.996 6 C -0.150 4.150 7 C -0.150 4.150 8 N -0.453 5.453 9 C -0.067 4.067 10 C 0.589 3.411 11 O -0.548 6.548 12 N -0.696 5.696 13 C 0.131 3.869 14 C 0.056 3.944 15 C -0.131 4.131 16 C -0.131 4.131 17 C -0.507 4.507 18 H 0.057 0.943 19 C 0.067 3.933 20 N -0.885 5.885 21 Si 0.894 3.106 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 H 0.074 0.926 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.407 0.593 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.008 0.992 39 H 0.086 0.914 40 H 0.026 0.974 41 H 0.026 0.974 42 H 0.086 0.914 43 H 0.008 0.992 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.462 21.244 0.013 21.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.028 4.028 3 O -0.084 6.084 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.208 4.208 7 C -0.208 4.208 8 N -0.182 5.182 9 C -0.187 4.187 10 C 0.373 3.627 11 O -0.427 6.427 12 N -0.345 5.345 13 C 0.009 3.991 14 C 0.056 3.944 15 C -0.189 4.189 16 C -0.189 4.189 17 C -0.546 4.546 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.524 5.524 21 Si 0.722 3.278 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 H 0.093 0.907 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.244 0.756 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.027 0.973 39 H 0.104 0.896 40 H 0.045 0.955 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.027 0.973 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.563 20.535 0.006 20.595 hybrid contribution -0.327 -0.551 0.001 0.641 sum -1.891 19.984 0.008 20.074 Atomic orbital electron populations 1.20404 0.82583 1.03348 1.05613 1.23697 0.95050 0.83347 1.00696 1.84265 1.17923 1.36209 1.69974 1.26136 0.84031 0.90184 1.01240 1.19761 0.90003 0.94262 0.97542 1.21895 1.03019 0.99511 0.96330 1.21896 1.03018 0.99508 0.96336 1.70787 1.21887 1.08817 1.16738 1.21746 0.88588 0.96098 1.12256 1.16769 0.85847 0.82475 0.77565 1.90759 1.16342 1.83377 1.52261 1.46160 1.10030 1.07005 1.71341 1.21805 0.99310 0.77398 1.00631 1.18351 0.89853 0.93258 0.92964 1.21826 1.02326 0.97280 0.97455 1.21828 1.02331 0.97279 0.97452 1.20947 0.92967 0.89601 1.51039 0.92464 1.24878 0.94889 0.98903 0.94809 1.69802 0.99875 1.32246 1.50433 0.86630 0.77945 0.84599 0.78646 1.20301 1.21346 1.20295 0.90676 0.88331 0.88322 0.86638 0.91821 0.91901 0.90820 0.91903 0.90820 0.91825 0.75650 0.92471 0.92467 0.97321 0.89581 0.95498 0.95499 0.89576 0.97326 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 9.13 36.01 0.33 -0.37 16 2 C 0.03 0.40 7.44 -35.08 -0.26 0.14 16 3 O -0.20 -2.56 10.73 6.50 0.07 -2.49 16 4 C 0.19 2.50 6.81 -13.08 -0.09 2.41 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.28 16 6 C -0.15 -1.05 9.18 37.16 0.34 -0.71 16 7 C -0.15 -1.05 9.18 37.16 0.34 -0.71 16 8 N -0.45 -7.26 11.06 -7.66 -0.08 -7.35 16 9 C -0.07 -1.13 6.99 -83.02 -0.58 -1.71 16 10 C 0.59 11.46 7.81 -12.52 -0.10 11.37 16 11 O -0.55 -11.46 15.61 5.27 0.08 -11.37 16 12 N -0.70 -13.97 4.96 -61.38 -0.30 -14.28 16 13 C 0.13 2.91 4.50 -4.04 -0.02 2.89 16 14 C 0.06 1.36 0.50 -155.66 -0.08 1.28 16 15 C -0.13 -3.10 8.08 37.15 0.30 -2.80 16 16 C -0.13 -3.11 8.08 37.16 0.30 -2.81 16 17 C -0.51 -13.55 8.01 -34.44 -0.28 -13.82 16 18 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.78 5.15 -17.82 -0.09 1.69 16 20 N -0.89 -24.01 9.35 55.43 0.52 -23.49 16 21 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 27 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 28 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.41 8.00 5.89 -40.82 -0.24 7.76 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 39 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 40 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.22 6.07 -51.93 -0.32 1.91 16 43 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 44 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 358.46 15.07 5.40 5.40 Total: -1.00 -29.83 358.46 -6.57 -36.40 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.04 Total: 4.66 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -0.19 Total: -3.43 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.13 Total: -45.12 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.15 Total: -13.86 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.83 -6.57 -36.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.448 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds