Wall clock time and date at job start Tue Mar 31 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34264 * 126.52101 * 2 1 4 4 C 1.34049 * 108.22405 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.37479 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47466 * 60.02619 * 5 4 3 7 7 C 1.53006 * 109.47239 * 300.02331 * 5 4 3 8 8 N 1.29932 * 109.24450 * 0.24432 * 4 3 2 9 9 C 1.36067 * 108.47759 * 359.61403 * 8 4 3 10 10 C 1.47423 * 126.44940 * 180.15304 * 9 8 4 11 11 O 1.21614 * 119.99980 * 180.26890 * 10 9 8 12 12 N 1.34769 * 120.00079 * 0.26970 * 10 9 8 13 13 C 1.46503 * 120.00295 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47150 * 180.02562 * 13 12 10 15 15 C 1.52993 * 109.47099 * 299.99536 * 14 13 12 16 16 C 1.52998 * 109.47094 * 59.99994 * 14 13 12 17 17 C 1.50705 * 109.46885 * 179.97438 * 14 13 12 18 18 H 1.07996 * 119.99893 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99861 * 180.02562 * 17 14 13 20 20 N 1.31507 * 119.99901 * 359.97438 * 19 17 14 21 21 Si 1.86801 * 119.99803 * 180.02562 * 19 17 14 22 22 H 1.48497 * 109.47249 * 59.99295 * 21 19 17 23 23 H 1.48496 * 109.47118 * 179.97438 * 21 19 17 24 24 H 1.48511 * 109.46840 * 299.99521 * 21 19 17 25 25 H 1.08998 * 109.47466 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47106 * 119.97193 * 1 2 3 27 27 H 1.09003 * 109.46963 * 239.97219 * 1 2 3 28 28 H 1.08998 * 109.46862 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 30 30 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 31 31 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47002 * 60.00070 * 7 5 4 33 33 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47050 * 300.00336 * 7 5 4 35 35 H 0.97007 * 120.00173 * 0.02562 * 12 10 9 36 36 H 1.09006 * 109.46326 * 299.99927 * 13 12 10 37 37 H 1.08994 * 109.46945 * 59.99709 * 13 12 10 38 38 H 1.09001 * 109.47320 * 60.00486 * 15 14 13 39 39 H 1.09002 * 109.47084 * 180.02562 * 15 14 13 40 40 H 1.08994 * 109.47314 * 300.00546 * 15 14 13 41 41 H 1.08999 * 109.47410 * 60.00013 * 16 14 13 42 42 H 1.09002 * 109.47090 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.47478 * 299.99485 * 16 14 13 44 44 H 0.97004 * 120.00015 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5788 0.6582 -0.0006 5 6 4.7928 1.5509 -0.0013 6 6 4.7775 2.4339 1.2481 7 6 4.7755 2.4344 -1.2504 8 7 3.6002 -0.6410 -0.0062 9 6 2.3170 -1.0935 -0.0007 10 6 1.8855 -2.5032 -0.0009 11 8 0.7004 -2.7763 -0.0006 12 7 2.8042 -3.4892 -0.0016 13 6 2.3753 -4.8900 -0.0024 14 6 3.6053 -5.8000 -0.0024 15 6 4.4446 -5.5229 -1.2512 16 6 4.4438 -5.5240 1.2473 17 6 3.1641 -7.2410 -0.0026 18 1 2.1117 -7.4835 -0.0023 19 6 4.1040 -8.2497 -0.0021 20 7 5.3855 -7.9544 -0.0019 21 14 3.5571 -10.0359 -0.0031 22 1 2.7438 -10.3039 -1.2163 23 1 4.7509 -10.9191 -0.0029 24 1 2.7418 -10.3046 1.2088 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5134 -0.8902 27 1 -0.3633 -0.5143 0.8898 28 1 5.6943 0.9382 -0.0021 29 1 4.7898 1.8045 2.1379 30 1 3.8759 3.0466 1.2489 31 1 5.6559 3.0793 1.2477 32 1 3.8740 3.0471 -1.2496 33 1 5.6539 3.0797 -1.2512 34 1 4.7865 1.8053 -2.1405 35 1 3.7495 -3.2714 -0.0015 36 1 1.7777 -5.0875 0.8876 37 1 1.7776 -5.0865 -0.8924 38 1 4.7638 -4.4807 -1.2506 39 1 5.3207 -6.1715 -1.2514 40 1 3.8473 -5.7194 -2.1414 41 1 3.8458 -5.7214 2.1370 42 1 5.3198 -6.1726 1.2476 43 1 4.7629 -4.4819 1.2479 44 1 6.0468 -8.6641 -0.0019 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458046003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:44 Heat of formation + Delta-G solvation = -59.282976 kcal Electronic energy + Delta-G solvation = -24014.962585 eV Core-core repulsion = 20546.498532 eV Total energy + Delta-G solvation = -3468.464053 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -44.55929 -40.67294 -38.18142 -36.74789 -35.87312 -34.99709 -32.98073 -32.72527 -28.71601 -28.09749 -27.61268 -27.44786 -26.76753 -24.72202 -23.47839 -22.23040 -21.01231 -20.53937 -18.97015 -18.05714 -17.79994 -17.11409 -16.83331 -16.47920 -16.21802 -16.08283 -15.38126 -14.99421 -14.73862 -14.61314 -14.48766 -14.30880 -14.02580 -13.78895 -13.46280 -13.23745 -13.11305 -13.04152 -12.70946 -12.63374 -12.60664 -12.47624 -12.28288 -12.14469 -12.13582 -11.97893 -11.87085 -11.52264 -11.40415 -11.10671 -10.73674 -10.41202 -10.13428 -9.77037 -8.02168 -6.18978 -0.00920 0.92433 1.38865 1.45359 1.45759 1.52932 2.15624 2.20021 2.47508 2.77676 3.21178 3.52435 3.69087 3.91650 4.06050 4.14295 4.23477 4.35462 4.44069 4.46860 4.55952 4.66564 4.77079 4.79376 4.87617 4.90800 4.91532 4.98336 5.01802 5.06209 5.07904 5.13087 5.14986 5.29926 5.31123 5.31568 5.50541 5.62554 5.65665 6.08827 6.17381 6.32411 6.40449 6.62440 6.84511 7.11141 7.48730 8.97085 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023760 B = 0.003429 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.169273 B = 8164.817993 C = 8970.697910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.044 3.956 3 O -0.189 6.189 4 C 0.205 3.795 5 C 0.001 3.999 6 C -0.145 4.145 7 C -0.145 4.145 8 N -0.486 5.486 9 C -0.104 4.104 10 C 0.589 3.411 11 O -0.568 6.568 12 N -0.697 5.697 13 C 0.147 3.853 14 C 0.052 3.948 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.530 4.530 18 H 0.049 0.951 19 C 0.027 3.973 20 N -0.900 5.900 21 Si 0.949 3.051 22 H -0.276 1.276 23 H -0.283 1.283 24 H -0.276 1.276 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.100 0.900 34 H 0.051 0.949 35 H 0.409 0.591 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.027 0.973 39 H 0.065 0.935 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.065 0.935 43 H 0.027 0.973 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.362 23.309 0.016 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.013 4.013 3 O -0.076 6.076 4 C -0.005 4.005 5 C -0.018 4.018 6 C -0.203 4.203 7 C -0.203 4.203 8 N -0.214 5.214 9 C -0.223 4.223 10 C 0.376 3.624 11 O -0.449 6.449 12 N -0.347 5.347 13 C 0.024 3.976 14 C 0.051 3.949 15 C -0.177 4.177 16 C -0.177 4.177 17 C -0.569 4.569 18 H 0.067 0.933 19 C -0.173 4.173 20 N -0.539 5.539 21 Si 0.776 3.224 22 H -0.201 1.201 23 H -0.208 1.208 24 H -0.201 1.201 25 H 0.128 0.872 26 H 0.115 0.885 27 H 0.115 0.885 28 H 0.137 0.863 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.118 0.882 34 H 0.070 0.930 35 H 0.246 0.754 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.083 0.917 40 H 0.039 0.961 41 H 0.039 0.961 42 H 0.083 0.917 43 H 0.046 0.954 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.458 22.608 0.009 22.655 hybrid contribution -0.343 -1.088 0.001 1.141 sum -1.801 21.520 0.009 21.595 Atomic orbital electron populations 1.20551 0.80471 1.05594 1.05309 1.24173 0.96171 0.82817 0.98108 1.84315 1.17983 1.35552 1.69772 1.27074 0.84883 0.89914 0.98641 1.20097 0.88085 0.94268 0.99390 1.21893 1.04445 0.99254 0.94691 1.21894 1.04445 0.99249 0.94696 1.70738 1.21655 1.10424 1.18620 1.21446 0.89903 0.95216 1.15727 1.17064 0.85392 0.83432 0.76517 1.90732 1.17034 1.84036 1.53060 1.46013 1.10283 1.06254 1.72107 1.21416 0.98118 0.78524 0.99582 1.18352 0.90590 0.92683 0.93255 1.21659 1.01142 0.97917 0.96987 1.21661 1.01147 0.97917 0.96984 1.21230 0.92770 0.91262 1.51631 0.93256 1.25501 0.95006 1.02214 0.94528 1.69914 1.00420 1.33098 1.50445 0.85752 0.77608 0.80538 0.78521 1.20121 1.20843 1.20109 0.87192 0.88517 0.88503 0.86334 0.92945 0.91668 0.88171 0.91670 0.88170 0.92960 0.75399 0.93533 0.93528 0.95419 0.91668 0.96085 0.96088 0.91663 0.95423 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.28 9.13 71.24 0.65 -0.63 16 2 C 0.04 1.20 7.44 25.19 0.19 1.39 16 3 O -0.19 -4.56 10.73 0.33 0.00 -4.55 16 4 C 0.20 5.00 6.81 88.39 0.60 5.60 16 5 C 0.00 0.01 3.39 -11.54 -0.04 -0.03 16 6 C -0.15 -1.64 9.18 71.98 0.66 -0.98 16 7 C -0.15 -1.65 9.18 71.98 0.66 -0.99 16 8 N -0.49 -15.29 11.06 -293.04 -3.24 -18.53 16 9 C -0.10 -3.50 6.99 40.41 0.28 -3.22 16 10 C 0.59 23.11 7.81 86.66 0.68 23.79 16 11 O -0.57 -23.95 15.61 -4.08 -0.06 -24.02 16 12 N -0.70 -28.22 4.96 -466.37 -2.31 -30.54 16 13 C 0.15 6.64 4.50 86.38 0.39 7.03 16 14 C 0.05 2.53 0.50 -52.93 -0.03 2.51 16 15 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 16 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 17 C -0.53 -28.72 8.01 25.60 0.21 -28.51 16 18 H 0.05 2.68 7.74 -2.91 -0.02 2.66 16 19 C 0.03 1.47 5.15 84.66 0.44 1.90 16 20 N -0.90 -49.16 9.35 21.45 0.20 -48.96 16 21 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 25 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 27 H 0.10 2.06 8.08 -2.39 -0.02 2.04 16 28 H 0.12 1.76 8.14 -2.39 -0.02 1.75 16 29 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.41 16.10 5.89 -92.70 -0.55 15.55 16 36 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 37 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 39 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 40 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 43 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 44 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 Total: -1.00 -64.19 358.46 2.91 -61.28 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.45 Total: 22.53 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 5.85 Total: -2.35 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -5.35 Total: -98.03 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.06 Total: -28.57 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -64.19 2.91 -61.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458046003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.000 kcal (2) G-P(sol) polarization free energy of solvation -64.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds