Wall clock time and date at job start Tue Mar 31 2020 07:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34887 * 117.00403 * 2 1 4 4 O 1.21624 * 119.99726 * 0.02562 * 3 2 1 5 5 C 1.46491 * 120.00543 * 180.02562 * 3 2 1 6 6 C 1.37991 * 126.26611 * 180.18847 * 5 3 2 7 7 C 1.39794 * 106.96807 * 180.25494 * 6 5 3 8 8 C 1.50704 * 126.08124 * 179.77754 * 7 6 5 9 9 N 1.46903 * 109.47141 * 269.96125 * 8 7 6 10 10 C 1.46899 * 110.99997 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47051 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47301 * 299.99971 * 11 10 9 13 13 C 1.53008 * 109.46942 * 60.00199 * 11 10 9 14 14 C 1.50698 * 109.46998 * 179.97438 * 11 10 9 15 15 H 1.08003 * 119.99992 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99843 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00085 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99974 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47114 * 60.00198 * 18 16 14 20 20 H 1.48497 * 109.47188 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47238 * 300.00209 * 18 16 14 22 22 C 1.35485 * 107.84326 * 359.74279 * 7 6 5 23 23 N 1.34957 * 108.98658 * 359.97438 * 22 7 6 24 24 C 1.46499 * 125.63725 * 180.02562 * 23 22 7 25 25 H 1.08999 * 109.46902 * 299.99982 * 1 2 3 26 26 H 1.08997 * 109.47278 * 59.99934 * 1 2 3 27 27 H 1.09007 * 109.47204 * 179.97438 * 1 2 3 28 28 H 1.08002 * 126.51550 * 359.97438 * 6 5 3 29 29 H 1.09003 * 109.46828 * 29.95479 * 8 7 6 30 30 H 1.08994 * 109.47329 * 149.95635 * 8 7 6 31 31 H 1.00896 * 111.00157 * 56.04237 * 9 8 7 32 32 H 1.09004 * 109.46733 * 299.99970 * 10 9 8 33 33 H 1.09002 * 109.46985 * 60.00008 * 10 9 8 34 34 H 1.09002 * 109.46765 * 60.00196 * 12 11 10 35 35 H 1.08995 * 109.47202 * 179.97438 * 12 11 10 36 36 H 1.08994 * 109.47064 * 300.00206 * 12 11 10 37 37 H 1.08996 * 109.47066 * 59.99541 * 13 11 10 38 38 H 1.08997 * 109.46616 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.46627 * 300.00010 * 13 11 10 40 40 H 0.97006 * 119.99692 * 180.02562 * 17 16 14 41 41 H 1.08004 * 125.50845 * 179.97438 * 22 7 6 42 42 H 1.09002 * 109.47391 * 90.02143 * 24 23 22 43 43 H 1.09001 * 109.46813 * 330.02199 * 24 23 22 44 44 H 1.09004 * 109.47041 * 210.02326 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4020 2.2218 0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.2842 2.4323 0.0030 7 6 5.6260 2.0401 -0.0051 8 6 6.8196 2.9601 -0.0095 9 7 7.2006 3.2613 -1.3959 10 6 8.3631 4.1583 -1.4393 11 6 8.7296 4.4479 -2.8963 12 6 9.0705 3.1365 -3.6069 13 6 7.5443 5.1148 -3.5974 14 6 9.9218 5.3686 -2.9409 15 1 10.3727 5.7131 -2.0219 16 6 10.4362 5.7720 -4.1548 17 7 9.8861 5.3538 -5.2737 18 14 11.9136 6.9139 -4.2101 19 1 13.0645 6.2676 -3.5297 20 1 12.2694 7.1950 -5.6241 21 1 11.5818 8.1864 -3.5203 22 6 5.6626 0.6857 -0.0075 23 7 4.3988 0.2123 -0.0006 24 6 4.0171 -1.2021 -0.0001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.9110 3.4458 0.0064 29 1 6.5665 3.8860 0.5071 30 1 7.6532 2.4762 0.4995 31 1 6.4236 3.6517 -1.9077 32 1 8.1203 5.0924 -0.9327 33 1 9.2076 3.6830 -0.9402 34 1 8.2078 2.4710 -3.5746 35 1 9.3311 3.3428 -4.6449 36 1 9.9147 2.6615 -3.1074 37 1 7.3015 6.0490 -3.0912 38 1 7.8053 5.3207 -4.6355 39 1 6.6817 4.4492 -3.5651 40 1 10.2484 5.6373 -6.1278 41 1 6.5584 0.0824 -0.0138 42 1 3.9280 -1.5540 1.0277 43 1 4.7788 -1.7841 -0.5187 44 1 3.0603 -1.3204 -0.5089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459737056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:04 Heat of formation + Delta-G solvation = -37.086110 kcal Electronic energy + Delta-G solvation = -23489.162275 eV Core-core repulsion = 20021.660750 eV Total energy + Delta-G solvation = -3467.501525 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.60118 -40.02420 -36.87440 -36.63148 -34.43248 -32.61726 -30.88948 -29.92107 -27.84626 -27.20736 -25.48275 -25.17372 -24.84280 -23.28987 -22.55212 -20.07238 -19.90225 -18.40094 -17.54748 -17.16175 -16.69471 -15.80751 -15.77382 -15.34465 -15.02982 -14.47437 -14.20583 -13.83451 -13.51033 -13.43129 -13.39449 -12.92785 -12.61374 -12.52992 -12.26316 -12.16689 -11.98260 -11.80222 -11.30251 -11.09355 -11.04655 -10.91429 -10.82804 -10.59750 -10.52379 -10.10101 -10.00857 -9.30927 -9.05157 -8.72124 -8.55663 -8.27185 -8.22502 -7.56061 -5.85580 -3.95900 1.12840 2.40010 2.57980 2.70508 3.06613 3.36357 3.40997 3.43702 4.48549 4.50336 4.63005 4.78702 4.88152 4.95261 4.96663 5.15651 5.18809 5.27060 5.35401 5.39616 5.41132 5.73261 5.89435 6.02816 6.11794 6.24560 6.43217 6.50261 6.70671 6.80581 6.92386 6.97903 7.09278 7.16253 7.25363 7.45748 7.55099 7.57779 7.82612 7.82978 7.91322 8.09569 8.28993 8.41737 8.62439 9.05718 9.68781 11.14816 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032024 B = 0.002737 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.133167 B =10227.977293 C =10451.464087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.365 6.365 3 C 0.539 3.461 4 O -0.503 6.503 5 C -0.062 4.062 6 C -0.083 4.083 7 C -0.167 4.167 8 C 0.128 3.872 9 N -0.683 5.683 10 C 0.074 3.926 11 C 0.069 3.931 12 C -0.118 4.118 13 C -0.133 4.133 14 C -0.506 4.506 15 H 0.051 0.949 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.888 3.112 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.279 1.279 22 C 0.058 3.942 23 N -0.421 5.421 24 C 0.067 3.933 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.101 0.899 28 H 0.148 0.852 29 H 0.030 0.970 30 H 0.072 0.928 31 H 0.339 0.661 32 H 0.013 0.987 33 H 0.055 0.945 34 H 0.020 0.980 35 H 0.073 0.927 36 H 0.017 0.983 37 H 0.019 0.981 38 H 0.082 0.918 39 H 0.011 0.989 40 H 0.258 0.742 41 H 0.174 0.826 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.928 -14.407 11.278 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.283 6.283 3 C 0.385 3.615 4 O -0.391 6.391 5 C -0.170 4.170 6 C -0.110 4.110 7 C -0.173 4.173 8 C -0.002 4.002 9 N -0.315 5.315 10 C -0.054 4.054 11 C 0.069 3.931 12 C -0.176 4.176 13 C -0.191 4.191 14 C -0.545 4.545 15 H 0.069 0.931 16 C -0.136 4.136 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.205 1.205 22 C -0.080 4.080 23 N -0.096 5.096 24 C -0.074 4.074 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.119 0.881 28 H 0.166 0.834 29 H 0.048 0.952 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.036 0.964 37 H 0.038 0.962 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.068 0.932 41 H 0.191 0.809 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.924 -15.037 11.007 23.875 hybrid contribution 0.225 1.477 0.220 1.510 sum -14.699 -13.560 11.227 22.934 Atomic orbital electron populations 1.23258 0.76047 1.03587 1.02783 1.86586 1.23672 1.32961 1.85076 1.19839 0.87047 0.81571 0.73028 1.90903 1.65520 1.35766 1.46897 1.19202 0.86237 0.88074 1.23498 1.21290 0.91989 0.96722 1.00976 1.19465 0.94254 0.93212 1.10375 1.20221 0.92968 0.95328 0.91640 1.60669 1.09797 1.50168 1.10902 1.22159 0.91001 0.91796 1.00443 1.18077 0.93405 0.93396 0.88246 1.21630 0.97155 0.96108 1.02723 1.21836 0.95994 0.96982 1.04241 1.21093 1.13178 1.28091 0.92122 0.93064 1.24886 0.96775 0.96153 0.95783 1.69833 1.40611 1.44796 0.97172 0.86731 0.83443 0.81404 0.76780 1.20438 1.21422 1.20491 1.21855 0.86630 0.95065 1.04431 1.43826 1.05762 1.06215 1.53815 1.22256 1.03377 0.78020 1.03708 0.91820 0.91733 0.88101 0.83397 0.95177 0.90938 0.84222 0.96915 0.92607 0.96092 0.90862 0.96374 0.96228 0.89912 0.96977 0.93197 0.80908 0.90614 0.89439 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.37 -3.69 7.99 -41.00 -0.33 -4.01 16 3 C 0.54 7.08 7.92 34.06 0.27 7.35 16 4 O -0.50 -7.85 16.68 -19.36 -0.32 -8.18 16 5 C -0.06 -0.82 6.88 -82.00 -0.56 -1.38 16 6 C -0.08 -1.17 10.60 -39.09 -0.41 -1.58 16 7 C -0.17 -2.29 5.62 -105.02 -0.59 -2.88 16 8 C 0.13 1.91 6.17 -4.97 -0.03 1.88 16 9 N -0.68 -12.38 5.70 -115.05 -0.66 -13.04 16 10 C 0.07 1.56 4.59 -3.82 -0.02 1.54 16 11 C 0.07 1.69 0.57 -155.66 -0.09 1.61 16 12 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 13 C -0.13 -3.21 7.92 37.16 0.29 -2.92 16 14 C -0.51 -13.75 8.01 -34.44 -0.28 -14.03 16 15 H 0.05 1.38 7.74 -52.48 -0.41 0.98 16 16 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 17 N -0.89 -24.81 9.35 55.43 0.52 -24.29 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 C 0.06 0.67 11.26 -17.16 -0.19 0.48 16 23 N -0.42 -4.66 3.15 -120.40 -0.38 -5.04 16 24 C 0.07 0.48 10.57 59.85 0.63 1.11 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.10 0.39 8.14 -51.92 -0.42 -0.04 16 28 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 29 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.34 6.32 6.76 -39.29 -0.27 6.05 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.02 0.47 7.60 -51.93 -0.39 0.08 16 35 H 0.07 1.98 6.07 -51.93 -0.32 1.66 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 39 H 0.01 0.25 6.57 -51.93 -0.34 -0.09 16 40 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.17 1.61 8.06 -52.48 -0.42 1.19 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.68 6.13 -51.93 -0.32 0.36 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -31.07 358.57 -7.47 -38.55 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.99 Total: 2.75 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 0.30 Total: -8.42 kcal Atomic # 7 Polarization: -41.85 SS G_CDS: -0.52 Total: -42.37 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: -0.65 Total: -12.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.07 -7.47 -38.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.461 kcal (2) G-P(sol) polarization free energy of solvation -31.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds