Wall clock time and date at job start Tue Mar 31 2020 07:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34887 * 117.00403 * 2 1 4 4 O 1.21624 * 119.99726 * 0.02562 * 3 2 1 5 5 C 1.46491 * 120.00543 * 180.02562 * 3 2 1 6 6 C 1.37991 * 126.26611 * 180.18847 * 5 3 2 7 7 C 1.39794 * 106.96807 * 180.25494 * 6 5 3 8 8 C 1.50704 * 126.08124 * 179.77754 * 7 6 5 9 9 N 1.46903 * 109.47141 * 269.96125 * 8 7 6 10 10 C 1.46899 * 110.99997 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47051 * 179.97438 * 10 9 8 12 12 C 1.52999 * 109.47301 * 299.99971 * 11 10 9 13 13 C 1.53008 * 109.46942 * 60.00199 * 11 10 9 14 14 C 1.50698 * 109.46998 * 179.97438 * 11 10 9 15 15 H 1.08003 * 119.99992 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99843 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00085 * 0.02562 * 16 14 11 18 18 Si 1.86807 * 119.99974 * 179.97438 * 16 14 11 19 19 H 1.48500 * 109.47114 * 60.00198 * 18 16 14 20 20 H 1.48497 * 109.47188 * 179.97438 * 18 16 14 21 21 H 1.48491 * 109.47238 * 300.00209 * 18 16 14 22 22 C 1.35485 * 107.84326 * 359.74279 * 7 6 5 23 23 N 1.34957 * 108.98658 * 359.97438 * 22 7 6 24 24 C 1.46499 * 125.63725 * 180.02562 * 23 22 7 25 25 H 1.08999 * 109.46902 * 299.99982 * 1 2 3 26 26 H 1.08997 * 109.47278 * 59.99934 * 1 2 3 27 27 H 1.09007 * 109.47204 * 179.97438 * 1 2 3 28 28 H 1.08002 * 126.51550 * 359.97438 * 6 5 3 29 29 H 1.09003 * 109.46828 * 29.95479 * 8 7 6 30 30 H 1.08994 * 109.47329 * 149.95635 * 8 7 6 31 31 H 1.00896 * 111.00157 * 56.04237 * 9 8 7 32 32 H 1.09004 * 109.46733 * 299.99970 * 10 9 8 33 33 H 1.09002 * 109.46985 * 60.00008 * 10 9 8 34 34 H 1.09002 * 109.46765 * 60.00196 * 12 11 10 35 35 H 1.08995 * 109.47202 * 179.97438 * 12 11 10 36 36 H 1.08994 * 109.47064 * 300.00206 * 12 11 10 37 37 H 1.08996 * 109.47066 * 59.99541 * 13 11 10 38 38 H 1.08997 * 109.46616 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.46627 * 300.00010 * 13 11 10 40 40 H 0.97006 * 119.99692 * 180.02562 * 17 16 14 41 41 H 1.08004 * 125.50845 * 179.97438 * 22 7 6 42 42 H 1.09002 * 109.47391 * 90.02143 * 24 23 22 43 43 H 1.09001 * 109.46813 * 330.02199 * 24 23 22 44 44 H 1.09004 * 109.47041 * 210.02326 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0644 1.2018 0.0000 4 8 1.4020 2.2218 0.0005 5 6 3.5273 1.2785 -0.0006 6 6 4.2842 2.4323 0.0030 7 6 5.6260 2.0401 -0.0051 8 6 6.8196 2.9601 -0.0095 9 7 7.2006 3.2613 -1.3959 10 6 8.3631 4.1583 -1.4393 11 6 8.7296 4.4479 -2.8963 12 6 9.0705 3.1365 -3.6069 13 6 7.5443 5.1148 -3.5974 14 6 9.9218 5.3686 -2.9409 15 1 10.3727 5.7131 -2.0219 16 6 10.4362 5.7720 -4.1548 17 7 9.8861 5.3538 -5.2737 18 14 11.9136 6.9139 -4.2101 19 1 13.0645 6.2676 -3.5297 20 1 12.2694 7.1950 -5.6241 21 1 11.5818 8.1864 -3.5203 22 6 5.6626 0.6857 -0.0075 23 7 4.3988 0.2123 -0.0006 24 6 4.0171 -1.2021 -0.0001 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 3.9110 3.4458 0.0064 29 1 6.5665 3.8860 0.5071 30 1 7.6532 2.4762 0.4995 31 1 6.4236 3.6517 -1.9077 32 1 8.1203 5.0924 -0.9327 33 1 9.2076 3.6830 -0.9402 34 1 8.2078 2.4710 -3.5746 35 1 9.3311 3.3428 -4.6449 36 1 9.9147 2.6615 -3.1074 37 1 7.3015 6.0490 -3.0912 38 1 7.8053 5.3207 -4.6355 39 1 6.6817 4.4492 -3.5651 40 1 10.2484 5.6373 -6.1278 41 1 6.5584 0.0824 -0.0138 42 1 3.9280 -1.5540 1.0277 43 1 4.7788 -1.7841 -0.5187 44 1 3.0603 -1.3204 -0.5089 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459737056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:03 Heat of formation + Delta-G solvation = -54.782716 kcal Electronic energy + Delta-G solvation = -23489.929657 eV Core-core repulsion = 20021.660750 eV Total energy + Delta-G solvation = -3468.268907 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.52940 -40.94662 -38.58301 -37.56203 -35.89633 -33.91212 -32.53347 -30.97742 -28.68541 -28.07344 -27.46336 -27.19561 -26.09671 -24.50290 -23.74192 -20.98819 -20.89283 -20.25913 -18.57864 -18.06734 -17.76277 -17.55653 -16.78894 -16.62795 -16.17644 -16.03683 -15.38931 -15.09574 -14.87826 -14.41802 -14.32648 -14.18928 -13.96605 -13.82972 -13.52558 -13.15936 -13.08467 -12.97548 -12.90696 -12.76449 -12.55879 -12.40996 -12.30586 -12.05672 -12.01148 -11.87820 -11.84184 -11.25492 -10.91292 -10.55834 -10.30528 -9.68047 -9.28128 -9.00913 -7.92834 -6.09768 0.15504 1.46054 1.46265 1.53247 1.55542 1.61451 1.91782 2.04654 2.49686 3.29014 3.67781 3.76242 3.92925 4.13519 4.28639 4.31686 4.34056 4.42047 4.48897 4.61044 4.63724 4.68339 4.75020 4.81380 4.86365 4.93859 4.96249 5.09163 5.19303 5.22716 5.29663 5.34501 5.49491 5.58932 5.68947 5.73627 5.81605 5.94524 6.23657 6.25790 6.33197 6.40873 6.54531 6.63460 6.70429 7.00535 7.57679 9.05073 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032024 B = 0.002737 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.133167 B =10227.977293 C =10451.464087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.541 3.459 4 O -0.538 6.538 5 C -0.077 4.077 6 C -0.103 4.103 7 C -0.187 4.187 8 C 0.133 3.867 9 N -0.682 5.682 10 C 0.088 3.912 11 C 0.060 3.940 12 C -0.104 4.104 13 C -0.122 4.122 14 C -0.526 4.526 15 H 0.046 0.954 16 C 0.021 3.979 17 N -0.905 5.905 18 Si 0.944 3.056 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.071 3.929 23 N -0.413 5.413 24 C 0.060 3.940 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.139 0.861 28 H 0.137 0.863 29 H 0.028 0.972 30 H 0.084 0.916 31 H 0.334 0.666 32 H 0.006 0.994 33 H 0.055 0.945 34 H 0.033 0.967 35 H 0.046 0.954 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.055 0.945 39 H 0.030 0.970 40 H 0.256 0.744 41 H 0.203 0.797 42 H 0.094 0.906 43 H 0.111 0.889 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.032 -16.379 12.205 25.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.274 6.274 3 C 0.389 3.611 4 O -0.429 6.429 5 C -0.186 4.186 6 C -0.130 4.130 7 C -0.193 4.193 8 C 0.004 3.996 9 N -0.314 5.314 10 C -0.040 4.040 11 C 0.059 3.941 12 C -0.162 4.162 13 C -0.180 4.180 14 C -0.564 4.564 15 H 0.064 0.936 16 C -0.178 4.178 17 N -0.544 5.544 18 Si 0.771 3.229 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.068 4.068 23 N -0.086 5.086 24 C -0.080 4.080 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.157 0.843 28 H 0.155 0.845 29 H 0.046 0.954 30 H 0.103 0.897 31 H 0.153 0.847 32 H 0.024 0.976 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.219 0.781 42 H 0.112 0.888 43 H 0.130 0.870 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -15.047 -17.052 11.949 25.689 hybrid contribution 0.178 1.991 -0.047 2.000 sum -14.869 -15.060 11.902 24.281 Atomic orbital electron populations 1.23597 0.74206 1.06025 1.02545 1.86581 1.25385 1.31094 1.84326 1.19891 0.87097 0.81900 0.72260 1.90880 1.66238 1.37047 1.48714 1.19240 0.86684 0.88670 1.24046 1.21337 0.92728 0.96906 1.02060 1.19353 0.93386 0.94121 1.12437 1.20195 0.94005 0.95738 0.89637 1.60636 1.08838 1.48808 1.13079 1.21839 0.92203 0.92150 0.97857 1.18134 0.92662 0.92820 0.90437 1.21451 0.97429 0.96426 1.00901 1.21680 0.96732 0.97236 1.02329 1.21438 1.14245 1.28748 0.92007 0.93559 1.25549 0.99135 0.97507 0.95605 1.69973 1.41535 1.45515 0.97383 0.85835 0.80656 0.79692 0.76708 1.19943 1.21235 1.20219 1.22243 0.87651 0.94596 1.02349 1.44085 1.05155 1.07315 1.52043 1.22585 1.04226 0.75821 1.05336 0.91935 0.92206 0.84278 0.84466 0.95417 0.89733 0.84707 0.97564 0.92665 0.94755 0.93530 0.96724 0.96652 0.92628 0.95092 0.93405 0.78062 0.88758 0.87026 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.36 -6.62 7.99 -58.01 -0.46 -7.08 16 3 C 0.54 13.96 7.92 69.97 0.55 14.51 16 4 O -0.54 -17.08 16.68 19.43 0.32 -16.75 16 5 C -0.08 -1.98 6.88 40.31 0.28 -1.70 16 6 C -0.10 -2.90 10.60 22.59 0.24 -2.67 16 7 C -0.19 -4.90 5.62 -20.12 -0.11 -5.01 16 8 C 0.13 3.81 6.17 85.56 0.53 4.34 16 9 N -0.68 -23.96 5.70 -517.92 -2.95 -26.92 16 10 C 0.09 3.66 4.59 86.30 0.40 4.05 16 11 C 0.06 2.93 0.57 -52.93 -0.03 2.90 16 12 C -0.10 -5.10 8.09 71.98 0.58 -4.51 16 13 C -0.12 -5.92 7.92 71.98 0.57 -5.35 16 14 C -0.53 -28.60 8.01 25.60 0.21 -28.40 16 15 H 0.05 2.50 7.74 -2.91 -0.02 2.48 16 16 C 0.02 1.14 5.15 84.65 0.44 1.58 16 17 N -0.90 -51.21 9.35 21.45 0.20 -51.01 16 18 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 C 0.07 1.47 11.26 83.58 0.94 2.41 16 23 N -0.41 -8.13 3.15 -534.85 -1.68 -9.81 16 24 C 0.06 0.64 10.57 127.77 1.35 1.99 16 25 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.14 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 29 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.33 12.24 6.76 -89.70 -0.61 11.63 16 32 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.03 1.53 7.60 -2.39 -0.02 1.51 16 35 H 0.05 2.52 6.07 -2.39 -0.01 2.50 16 36 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 3.01 6.07 -2.39 -0.01 2.99 16 39 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 40 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 41 H 0.20 2.94 8.06 -2.91 -0.02 2.92 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.10 1.08 6.13 -2.38 -0.01 1.06 16 Total: -1.00 -67.08 358.57 4.97 -62.11 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.38 Total: 18.06 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 7.13 Total: -14.31 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -4.44 Total: -87.73 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.14 Total: -23.84 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -67.08 4.97 -62.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459737056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.325 kcal (2) G-P(sol) polarization free energy of solvation -67.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds