Wall clock time and date at job start Tue Mar 31 2020 07:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 C 1.53002 * 109.47061 * 240.00622 * 2 1 3 5 5 C 1.50698 * 109.47177 * 120.00181 * 2 1 3 6 6 C 1.33000 * 119.99714 * 71.62094 * 5 2 1 7 7 C 1.47099 * 120.00189 * 351.59097 * 6 5 2 8 8 O 1.21618 * 119.99735 * 354.44223 * 7 6 5 9 9 N 1.34776 * 120.00212 * 174.43990 * 7 6 5 10 10 C 1.46959 * 120.59570 * 185.08848 * 9 7 6 11 11 C 1.53369 * 108.63576 * 235.20808 * 10 9 7 12 12 N 1.46960 * 108.63632 * 310.57860 * 11 10 9 13 13 C 1.34783 * 120.59493 * 235.20363 * 12 11 10 14 14 O 1.21692 * 119.99859 * 5.39686 * 13 12 11 15 15 C 1.46373 * 120.00229 * 185.39190 * 13 12 11 16 16 H 1.07998 * 119.99720 * 354.68820 * 15 13 12 17 17 C 1.40047 * 120.00186 * 174.68736 * 15 13 12 18 18 N 1.30672 * 119.99509 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00038 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46976 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47065 * 299.99909 * 19 17 15 22 22 H 1.48504 * 109.46911 * 60.00007 * 19 17 15 23 23 C 1.46961 * 118.81391 * 55.47759 * 12 11 10 24 24 C 1.46970 * 120.59178 * 5.07320 * 9 7 6 25 25 H 1.09005 * 109.47220 * 336.38060 * 1 2 3 26 26 H 1.09006 * 109.47309 * 96.37798 * 1 2 3 27 27 H 1.08999 * 109.47479 * 216.38146 * 1 2 3 28 28 H 1.09002 * 109.46675 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47842 * 300.00051 * 3 2 1 30 30 H 1.08999 * 109.47080 * 60.00625 * 3 2 1 31 31 H 1.09003 * 109.46573 * 265.50997 * 4 2 1 32 32 H 1.08998 * 109.47215 * 25.50314 * 4 2 1 33 33 H 1.08992 * 109.47567 * 145.50759 * 4 2 1 34 34 H 1.07990 * 120.00008 * 251.61886 * 5 2 1 35 35 H 1.07998 * 119.99697 * 171.58522 * 6 5 2 36 36 H 1.09006 * 109.61016 * 115.46284 * 10 9 7 37 37 H 1.09001 * 109.75234 * 355.03786 * 10 9 7 38 38 H 1.09001 * 109.61142 * 190.83282 * 11 10 9 39 39 H 1.09003 * 109.61229 * 70.32246 * 11 10 9 40 40 H 0.97007 * 119.99329 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.61216 * 64.26635 * 23 12 11 42 42 H 1.09002 * 109.61435 * 184.78045 * 23 12 11 43 43 H 1.08995 * 109.60948 * 244.53588 * 24 9 7 44 44 H 1.09001 * 109.60921 * 5.04482 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.9116 -2.0311 1.3316 7 6 1.1270 -2.7764 0.3352 8 8 0.5060 -2.1772 -0.5217 9 7 1.0964 -4.1233 0.3720 10 6 0.4094 -4.8849 -0.6805 11 6 -0.6244 -5.8073 -0.0227 12 7 0.0289 -6.5407 1.0705 13 6 -0.0017 -7.8877 1.1073 14 8 -0.4875 -8.5107 0.1818 15 6 0.5494 -8.6010 2.2606 16 1 1.0570 -8.0543 3.0415 17 6 0.4184 -9.9924 2.3513 18 7 -0.1962 -10.6537 1.4066 19 14 1.1211 -10.9027 3.8234 20 1 0.8515 -12.3561 3.6815 21 1 2.5869 -10.6751 3.8925 22 1 0.4829 -10.4004 5.0667 23 6 0.7111 -5.7790 2.1260 24 6 1.7497 -4.8568 1.4652 25 1 -0.3634 0.9416 0.4118 26 1 -0.3634 -0.1142 -1.0213 27 1 -0.3634 -0.8273 0.6095 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.2369 -1.7663 -1.0105 32 1 1.2866 -0.6637 -2.0350 33 1 2.9596 -0.2473 -1.5925 34 1 2.4903 -0.1472 2.0299 35 1 2.3896 -2.5562 2.1453 36 1 1.1348 -5.4830 -1.2321 37 1 -0.0936 -4.1994 -1.3626 38 1 -1.0063 -6.5134 -0.7600 39 1 -1.4453 -5.2112 0.3761 40 1 -0.2866 -11.6175 1.4693 41 1 -0.0168 -5.1809 2.6742 42 1 1.2115 -6.4664 2.8081 43 1 2.5706 -5.4528 1.0665 44 1 2.1316 -4.1506 2.2025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493619168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:03 Heat of formation + Delta-G solvation = -15.009632 kcal Electronic energy + Delta-G solvation = -24619.654729 eV Core-core repulsion = 21153.110512 eV Total energy + Delta-G solvation = -3466.544217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.60333 -38.50687 -36.87015 -35.53911 -33.15042 -32.50205 -31.91704 -30.67928 -27.51975 -27.18046 -27.09342 -26.12243 -23.93101 -22.89133 -21.70009 -20.14063 -19.01438 -17.85329 -17.20935 -16.21688 -15.91362 -15.56291 -15.37409 -14.62958 -14.45058 -14.33629 -14.10556 -13.99703 -13.92719 -13.54587 -13.34604 -12.85280 -12.44158 -12.29242 -11.89828 -11.80822 -11.66825 -11.40407 -11.17936 -11.04706 -10.95574 -10.90068 -10.83833 -10.81524 -10.71476 -10.54710 -10.29199 -10.10465 -9.43553 -9.17976 -8.92861 -8.44025 -7.67117 -7.24066 -6.26747 -4.72812 1.37307 3.10429 3.15546 3.17213 3.22145 3.39852 4.02535 4.42734 4.49709 4.57479 4.62439 4.86648 5.04782 5.21689 5.31984 5.34705 5.41994 5.54388 5.58053 5.58924 5.65908 5.69709 5.85057 5.88678 5.89899 5.96168 5.98163 6.08834 6.16791 6.18056 6.27008 6.29926 6.37588 6.41587 6.52509 6.53231 6.62352 6.81976 7.37558 7.49022 7.66059 8.03118 8.24985 8.38974 8.94499 9.33505 10.49579 10.67962 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035690 B = 0.003401 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.338093 B = 8230.141039 C = 8735.468605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.040 4.040 3 C -0.141 4.141 4 C -0.118 4.118 5 C -0.055 4.055 6 C -0.222 4.222 7 C 0.533 3.467 8 O -0.528 6.528 9 N -0.601 5.601 10 C 0.101 3.899 11 C 0.108 3.892 12 N -0.643 5.643 13 C 0.559 3.441 14 O -0.576 6.576 15 C -0.546 4.546 16 H 0.073 0.927 17 C 0.088 3.912 18 N -0.767 5.767 19 Si 0.907 3.093 20 H -0.280 1.280 21 H -0.267 1.267 22 H -0.267 1.267 23 C 0.109 3.891 24 C 0.088 3.912 25 H 0.030 0.970 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.270 0.730 41 H 0.047 0.953 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.119 18.590 1.772 19.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.040 4.040 3 C -0.198 4.198 4 C -0.175 4.175 5 C -0.075 4.075 6 C -0.242 4.242 7 C 0.324 3.676 8 O -0.409 6.409 9 N -0.334 5.334 10 C -0.023 4.023 11 C -0.017 4.017 12 N -0.382 5.382 13 C 0.365 3.635 14 O -0.458 6.458 15 C -0.582 4.582 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.395 5.395 19 Si 0.732 3.268 20 H -0.205 1.205 21 H -0.192 1.192 22 H -0.192 1.192 23 C -0.017 4.017 24 C -0.035 4.035 25 H 0.049 0.951 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.046 0.954 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.435 18.312 0.712 19.115 hybrid contribution 0.497 -0.517 1.018 1.245 sum 5.932 17.795 1.730 18.837 Atomic orbital electron populations 1.21850 0.92496 0.99306 1.02721 1.19685 0.96923 0.94051 0.93361 1.22017 1.00562 0.95593 1.01678 1.22213 0.98785 1.00495 0.96028 1.23851 0.92617 0.94366 0.96668 1.22730 1.04160 0.95478 1.01871 1.18441 0.82279 0.81632 0.85214 1.90891 1.45045 1.66699 1.38233 1.48005 1.54237 1.05269 1.25875 1.22034 0.95953 0.94387 0.89879 1.21500 0.93720 0.94372 0.92111 1.48177 1.58843 1.06575 1.24567 1.18281 0.79195 0.78278 0.87715 1.90599 1.50748 1.65145 1.39318 1.20912 1.39326 0.91853 1.06106 0.90937 1.25730 0.93408 0.97759 0.96348 1.70000 1.31117 1.08174 1.30229 0.86438 0.80002 0.78475 0.81899 1.20533 1.19197 1.19231 1.21891 0.94124 0.94401 0.91234 1.22442 0.96317 0.95439 0.89344 0.95134 0.92167 0.91951 0.92893 0.92462 0.92842 0.91634 0.92188 0.95372 0.86009 0.85260 0.91519 0.88978 0.88722 0.93594 0.91931 0.93484 0.87724 0.90964 0.89584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 7.62 37.16 0.28 -1.00 16 2 C -0.04 -0.43 0.75 -155.66 -0.12 -0.55 16 3 C -0.14 -1.22 8.00 37.16 0.30 -0.92 16 4 C -0.12 -1.45 7.55 37.16 0.28 -1.17 16 5 C -0.06 -0.55 8.49 -36.13 -0.31 -0.86 16 6 C -0.22 -2.48 8.80 -37.81 -0.33 -2.81 16 7 C 0.53 7.56 5.68 -12.67 -0.07 7.49 16 8 O -0.53 -8.20 7.99 5.26 0.04 -8.16 16 9 N -0.60 -9.06 2.95 -173.61 -0.51 -9.57 16 10 C 0.10 1.67 6.59 -3.60 -0.02 1.65 16 11 C 0.11 2.11 6.60 -3.60 -0.02 2.08 16 12 N -0.64 -14.09 2.94 -173.88 -0.51 -14.60 16 13 C 0.56 15.39 7.61 -12.99 -0.10 15.29 16 14 O -0.58 -18.20 14.45 5.20 0.08 -18.12 16 15 C -0.55 -14.64 8.87 -35.63 -0.32 -14.95 16 16 H 0.07 1.73 5.66 -52.49 -0.30 1.43 16 17 C 0.09 2.36 5.50 -17.37 -0.10 2.27 16 18 N -0.77 -22.44 11.84 55.55 0.66 -21.78 16 19 Si 0.91 19.34 29.56 -169.99 -5.02 14.31 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 22 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 23 C 0.11 1.87 6.51 -3.37 -0.02 1.85 16 24 C 0.09 1.24 6.50 -3.36 -0.02 1.22 16 25 H 0.03 0.32 7.74 -51.93 -0.40 -0.08 16 26 H 0.06 0.79 6.90 -51.93 -0.36 0.43 16 27 H 0.06 0.86 5.89 -51.93 -0.31 0.56 16 28 H 0.05 0.42 8.12 -51.93 -0.42 0.00 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.06 0.91 4.51 -51.93 -0.23 0.68 16 32 H 0.06 0.79 6.95 -51.93 -0.36 0.43 16 33 H 0.03 0.31 7.76 -51.93 -0.40 -0.10 16 34 H 0.12 0.91 8.00 -52.49 -0.42 0.49 16 35 H 0.13 1.18 5.89 -52.49 -0.31 0.87 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 38 H 0.09 2.05 6.99 -51.93 -0.36 1.68 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.10 1.83 5.34 -51.93 -0.28 1.55 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.09 0.91 5.34 -51.93 -0.28 0.63 16 LS Contribution 335.31 15.07 5.05 5.05 Total: -1.00 -33.05 335.31 -7.25 -40.30 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.46 Total: 2.99 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -0.57 Total: 9.58 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: -0.37 Total: -45.95 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.12 Total: -26.28 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.05 -7.25 -40.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493619168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.291 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds