Wall clock time and date at job start Tue Mar 31 2020 07:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46991 * 2 1 4 4 C 1.53002 * 109.47061 * 240.00622 * 2 1 3 5 5 C 1.50698 * 109.47177 * 120.00181 * 2 1 3 6 6 C 1.33000 * 119.99714 * 71.62094 * 5 2 1 7 7 C 1.47099 * 120.00189 * 351.59097 * 6 5 2 8 8 O 1.21618 * 119.99735 * 354.44223 * 7 6 5 9 9 N 1.34776 * 120.00212 * 174.43990 * 7 6 5 10 10 C 1.46959 * 120.59570 * 185.08848 * 9 7 6 11 11 C 1.53369 * 108.63576 * 235.20808 * 10 9 7 12 12 N 1.46960 * 108.63632 * 310.57860 * 11 10 9 13 13 C 1.34783 * 120.59493 * 235.20363 * 12 11 10 14 14 O 1.21692 * 119.99859 * 5.39686 * 13 12 11 15 15 C 1.46373 * 120.00229 * 185.39190 * 13 12 11 16 16 H 1.07998 * 119.99720 * 354.68820 * 15 13 12 17 17 C 1.40047 * 120.00186 * 174.68736 * 15 13 12 18 18 N 1.30672 * 119.99509 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00038 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46976 * 179.97438 * 19 17 15 21 21 H 1.48493 * 109.47065 * 299.99909 * 19 17 15 22 22 H 1.48504 * 109.46911 * 60.00007 * 19 17 15 23 23 C 1.46961 * 118.81391 * 55.47759 * 12 11 10 24 24 C 1.46970 * 120.59178 * 5.07320 * 9 7 6 25 25 H 1.09005 * 109.47220 * 336.38060 * 1 2 3 26 26 H 1.09006 * 109.47309 * 96.37798 * 1 2 3 27 27 H 1.08999 * 109.47479 * 216.38146 * 1 2 3 28 28 H 1.09002 * 109.46675 * 179.97438 * 3 2 1 29 29 H 1.08995 * 109.47842 * 300.00051 * 3 2 1 30 30 H 1.08999 * 109.47080 * 60.00625 * 3 2 1 31 31 H 1.09003 * 109.46573 * 265.50997 * 4 2 1 32 32 H 1.08998 * 109.47215 * 25.50314 * 4 2 1 33 33 H 1.08992 * 109.47567 * 145.50759 * 4 2 1 34 34 H 1.07990 * 120.00008 * 251.61886 * 5 2 1 35 35 H 1.07998 * 119.99697 * 171.58522 * 6 5 2 36 36 H 1.09006 * 109.61016 * 115.46284 * 10 9 7 37 37 H 1.09001 * 109.75234 * 355.03786 * 10 9 7 38 38 H 1.09001 * 109.61142 * 190.83282 * 11 10 9 39 39 H 1.09003 * 109.61229 * 70.32246 * 11 10 9 40 40 H 0.97007 * 119.99329 * 179.97438 * 18 17 15 41 41 H 1.08993 * 109.61216 * 64.26635 * 23 12 11 42 42 H 1.09002 * 109.61435 * 184.78045 * 23 12 11 43 43 H 1.08995 * 109.60948 * 244.53588 * 24 9 7 44 44 H 1.09001 * 109.60921 * 5.04482 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0323 -0.7104 1.2304 6 6 1.9116 -2.0311 1.3316 7 6 1.1270 -2.7764 0.3352 8 8 0.5060 -2.1772 -0.5217 9 7 1.0964 -4.1233 0.3720 10 6 0.4094 -4.8849 -0.6805 11 6 -0.6244 -5.8073 -0.0227 12 7 0.0289 -6.5407 1.0705 13 6 -0.0017 -7.8877 1.1073 14 8 -0.4875 -8.5107 0.1818 15 6 0.5494 -8.6010 2.2606 16 1 1.0570 -8.0543 3.0415 17 6 0.4184 -9.9924 2.3513 18 7 -0.1962 -10.6537 1.4066 19 14 1.1211 -10.9027 3.8234 20 1 0.8515 -12.3561 3.6815 21 1 2.5869 -10.6751 3.8925 22 1 0.4829 -10.4004 5.0667 23 6 0.7111 -5.7790 2.1260 24 6 1.7497 -4.8568 1.4652 25 1 -0.3634 0.9416 0.4118 26 1 -0.3634 -0.1142 -1.0213 27 1 -0.3634 -0.8273 0.6095 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 2.2369 -1.7663 -1.0105 32 1 1.2866 -0.6637 -2.0350 33 1 2.9596 -0.2473 -1.5925 34 1 2.4903 -0.1472 2.0299 35 1 2.3896 -2.5562 2.1453 36 1 1.1348 -5.4830 -1.2321 37 1 -0.0936 -4.1994 -1.3626 38 1 -1.0063 -6.5134 -0.7600 39 1 -1.4453 -5.2112 0.3761 40 1 -0.2866 -11.6175 1.4693 41 1 -0.0168 -5.1809 2.6742 42 1 1.2115 -6.4664 2.8081 43 1 2.5706 -5.4528 1.0665 44 1 2.1316 -4.1506 2.2025 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493619168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:00:02 Heat of formation + Delta-G solvation = -36.415437 kcal Electronic energy + Delta-G solvation = -24620.582954 eV Core-core repulsion = 21153.110512 eV Total energy + Delta-G solvation = -3467.472442 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.70696 -40.05628 -38.28254 -36.90352 -34.83139 -34.43452 -33.05771 -31.90006 -29.11116 -28.11787 -28.04417 -27.80538 -25.24040 -24.17887 -23.07454 -21.50098 -20.41098 -19.21192 -18.21862 -18.01980 -17.48662 -16.88153 -16.57984 -16.21970 -15.95008 -15.72258 -15.47424 -15.06680 -14.98790 -14.62048 -14.47417 -14.36380 -13.73280 -13.56339 -13.40714 -13.12272 -13.00526 -12.76915 -12.69805 -12.63398 -12.31584 -12.18570 -12.01466 -11.98480 -11.93636 -11.75423 -11.67553 -11.42823 -10.90737 -10.38858 -10.17728 -9.85521 -9.76155 -8.93744 -8.28550 -6.83757 0.50046 1.42618 1.45803 1.57427 2.01322 2.26245 2.36188 2.47837 2.83495 3.58898 3.63216 3.77065 3.94950 3.98529 4.11408 4.20188 4.24813 4.31199 4.49577 4.51553 4.55133 4.66141 4.72527 4.79778 4.82373 4.85807 4.87313 4.96932 5.01543 5.09044 5.24745 5.26761 5.29605 5.37911 5.39733 5.51429 5.54185 5.57109 5.71949 5.78932 6.12125 6.32860 6.55754 6.88414 7.28397 7.40217 8.45691 8.67391 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035690 B = 0.003401 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.338093 B = 8230.141039 C = 8735.468605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.046 4.046 3 C -0.137 4.137 4 C -0.114 4.114 5 C -0.040 4.040 6 C -0.234 4.234 7 C 0.527 3.473 8 O -0.547 6.547 9 N -0.608 5.608 10 C 0.116 3.884 11 C 0.111 3.889 12 N -0.646 5.646 13 C 0.540 3.460 14 O -0.633 6.633 15 C -0.566 4.566 16 H 0.101 0.899 17 C 0.027 3.973 18 N -0.825 5.825 19 Si 0.997 3.003 20 H -0.280 1.280 21 H -0.250 1.250 22 H -0.252 1.252 23 C 0.103 3.897 24 C 0.098 3.902 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.055 0.945 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.273 0.727 41 H 0.061 0.939 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.434 20.973 4.829 23.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.046 4.046 3 C -0.194 4.194 4 C -0.171 4.171 5 C -0.059 4.059 6 C -0.254 4.254 7 C 0.321 3.679 8 O -0.429 6.429 9 N -0.341 5.341 10 C -0.008 4.008 11 C -0.014 4.014 12 N -0.383 5.383 13 C 0.347 3.653 14 O -0.520 6.520 15 C -0.602 4.602 16 H 0.119 0.881 17 C -0.188 4.188 18 N -0.455 5.455 19 Si 0.816 3.184 20 H -0.205 1.205 21 H -0.174 1.174 22 H -0.176 1.176 23 C -0.020 4.020 24 C -0.025 4.025 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.177 0.823 35 H 0.174 0.826 36 H 0.074 0.926 37 H 0.114 0.886 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.774 20.784 3.792 22.512 hybrid contribution -0.290 -1.113 -0.022 1.151 sum 7.484 19.671 3.770 21.381 Atomic orbital electron populations 1.21759 0.93699 0.99235 1.01139 1.19744 0.95948 0.95673 0.93273 1.21975 1.01273 0.93763 1.02357 1.22137 0.98767 0.99769 0.96468 1.24169 0.91023 0.94083 0.96615 1.22780 1.04923 0.95837 1.01898 1.19073 0.82158 0.81099 0.85567 1.90901 1.45870 1.66875 1.39207 1.48054 1.54512 1.05769 1.25729 1.21673 0.94990 0.93872 0.90276 1.21490 0.94805 0.93952 0.91148 1.48045 1.58645 1.05597 1.25970 1.18747 0.78921 0.80111 0.87528 1.90549 1.53113 1.67235 1.41152 1.21480 1.39463 0.92754 1.06522 0.88122 1.27036 0.93144 0.98765 0.99816 1.70200 1.33205 1.08716 1.33347 0.85078 0.79767 0.76384 0.77155 1.20540 1.17383 1.17586 1.22149 0.94996 0.94567 0.90321 1.22445 0.94698 0.95678 0.89697 0.93525 0.94154 0.93932 0.91705 0.92740 0.91323 0.93397 0.94128 0.94155 0.82302 0.82581 0.92621 0.88559 0.91885 0.92898 0.91690 0.92063 0.87848 0.91504 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.31 7.62 71.98 0.55 -1.76 16 2 C -0.05 -0.88 0.75 -52.93 -0.04 -0.92 16 3 C -0.14 -1.87 8.00 71.98 0.58 -1.29 16 4 C -0.11 -2.67 7.55 71.98 0.54 -2.13 16 5 C -0.04 -0.63 8.49 24.52 0.21 -0.42 16 6 C -0.23 -4.37 8.80 23.43 0.21 -4.16 16 7 C 0.53 14.11 5.68 86.57 0.49 14.60 16 8 O -0.55 -16.79 7.99 -4.09 -0.03 -16.82 16 9 N -0.61 -17.62 2.95 -821.42 -2.42 -20.04 16 10 C 0.12 3.96 6.59 86.42 0.57 4.53 16 11 C 0.11 4.53 6.60 86.42 0.57 5.10 16 12 N -0.65 -28.91 2.94 -822.25 -2.42 -31.33 16 13 C 0.54 30.88 7.61 86.36 0.66 31.54 16 14 O -0.63 -42.47 14.45 -4.32 -0.06 -42.53 16 15 C -0.57 -30.63 8.87 24.83 0.22 -30.41 16 16 H 0.10 4.68 5.66 -2.91 -0.02 4.66 16 17 C 0.03 1.48 5.50 85.30 0.47 1.95 16 18 N -0.83 -50.08 11.84 21.84 0.26 -49.83 16 19 Si 1.00 39.28 29.56 68.60 2.03 41.31 16 20 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.25 -9.10 7.11 99.48 0.71 -8.39 16 22 H -0.25 -9.23 7.11 99.48 0.71 -8.52 16 23 C 0.10 3.41 6.51 86.57 0.56 3.97 16 24 C 0.10 2.51 6.50 86.56 0.56 3.07 16 25 H 0.05 0.88 7.74 -2.38 -0.02 0.87 16 26 H 0.04 1.06 6.90 -2.38 -0.02 1.04 16 27 H 0.04 1.13 5.89 -2.39 -0.01 1.11 16 28 H 0.06 0.76 8.12 -2.39 -0.02 0.74 16 29 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 31 H 0.05 1.28 4.51 -2.39 -0.01 1.27 16 32 H 0.04 1.08 6.95 -2.39 -0.02 1.06 16 33 H 0.04 0.81 7.76 -2.39 -0.02 0.80 16 34 H 0.16 1.42 8.00 -2.92 -0.02 1.39 16 35 H 0.16 2.01 5.89 -2.91 -0.02 2.00 16 36 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.10 3.19 7.00 -2.39 -0.02 3.17 16 38 H 0.06 2.96 6.99 -2.39 -0.02 2.94 16 39 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.27 15.12 8.29 -92.70 -0.77 14.35 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.10 3.42 5.34 -2.39 -0.01 3.41 16 43 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.13 2.18 5.34 -2.39 -0.01 2.17 16 Total: -1.00 -77.10 335.31 4.50 -72.60 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 1.01 Total: 22.98 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 6.15 Total: 23.66 kcal Atomic # 7 Polarization: -96.62 SS G_CDS: -4.58 Total: -101.20 kcal Atomic # 8 Polarization: -59.26 SS G_CDS: -0.10 Total: -59.35 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 2.03 Total: 41.31 kcal Total: -77.10 4.50 -72.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493619168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.181 kcal (2) G-P(sol) polarization free energy of solvation -77.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds