Wall clock time and date at job start Tue Mar 31 2020 07:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.53002 * 109.47359 * 119.99930 * 2 1 3 5 5 N 1.46500 * 109.46964 * 64.99893 * 4 2 1 6 6 C 1.46762 * 124.35120 * 270.00282 * 5 4 2 7 7 C 1.54479 * 105.47460 * 162.96304 * 6 5 4 8 8 H 1.08999 * 111.00206 * 267.27693 * 7 6 5 9 9 C 1.50706 * 110.96739 * 143.53485 * 7 6 5 10 10 O 1.21288 * 119.99964 * 6.16908 * 9 7 6 11 11 N 1.34779 * 119.99414 * 186.16558 * 9 7 6 12 12 C 1.37105 * 119.99268 * 179.97438 * 11 9 7 13 13 H 1.08005 * 119.99926 * 224.34487 * 12 11 9 14 14 C 1.38945 * 120.00271 * 44.35049 * 12 11 9 15 15 N 1.31417 * 120.00049 * 22.87599 * 14 12 11 16 16 Si 1.86799 * 120.00292 * 202.86960 * 14 12 11 17 17 H 1.48499 * 109.47146 * 270.00452 * 16 14 12 18 18 H 1.48507 * 109.46754 * 30.00078 * 16 14 12 19 19 H 1.48497 * 109.47100 * 149.99841 * 16 14 12 20 20 C 1.46490 * 120.00406 * 0.02562 * 11 9 7 21 21 C 1.53003 * 117.50250 * 184.74939 * 20 11 9 22 22 C 1.52994 * 60.00012 * 252.51075 * 21 20 11 23 23 C 1.54620 * 101.76623 * 25.41279 * 7 6 5 24 24 C 1.34425 * 124.35003 * 89.97727 * 5 4 2 25 25 O 1.21283 * 124.94024 * 0.38940 * 24 5 4 26 26 H 1.08995 * 109.46806 * 60.00344 * 1 2 3 27 27 H 1.09000 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47105 * 300.00107 * 1 2 3 29 29 H 1.09004 * 109.47188 * 240.00362 * 2 1 3 30 30 H 1.08993 * 109.47395 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46697 * 299.99952 * 3 2 1 32 32 H 1.08999 * 109.47141 * 59.99915 * 3 2 1 33 33 H 1.08996 * 109.46672 * 305.00503 * 4 2 1 34 34 H 1.08997 * 109.47267 * 184.99670 * 4 2 1 35 35 H 1.08997 * 110.24716 * 43.96048 * 6 5 4 36 36 H 1.08999 * 110.24407 * 281.96142 * 6 5 4 37 37 H 0.96999 * 119.99514 * 5.62280 * 15 14 12 38 38 H 1.09001 * 115.55243 * 330.45469 * 20 11 9 39 39 H 1.09004 * 117.49445 * 359.97438 * 21 20 11 40 40 H 1.09000 * 117.50358 * 145.01301 * 21 20 11 41 41 H 1.09001 * 117.49480 * 252.50417 * 22 21 20 42 42 H 1.09001 * 117.51854 * 107.47858 * 22 21 20 43 43 H 1.09010 * 110.48392 * 93.88110 * 23 7 6 44 44 H 1.09001 * 110.49079 * 216.38695 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1906 6 6 0.3981 -2.6703 1.7304 7 6 0.2262 -4.0567 1.0712 8 1 -0.3717 -3.9858 0.1626 9 6 -0.3805 -5.0417 2.0371 10 8 -0.7646 -4.6664 3.1247 11 7 -0.4964 -6.3394 1.6923 12 6 -1.0479 -7.2356 2.5713 13 1 -0.5839 -8.1991 2.7223 14 6 -2.2036 -6.9042 3.2677 15 7 -3.0123 -5.9812 2.7974 16 14 -2.6082 -7.7709 4.8722 17 1 -3.4225 -8.9802 4.5900 18 1 -1.3488 -8.1693 5.5508 19 1 -3.3749 -6.8520 5.7515 20 6 -0.0320 -6.7927 0.3789 21 6 -0.2916 -8.2529 0.0030 22 6 1.1264 -7.7915 0.3452 23 6 1.6894 -4.4333 0.7428 24 6 2.3999 -3.1021 0.6349 25 8 3.4856 -2.9338 0.1211 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 -0.4358 -2.0205 1.4652 36 1 0.4671 -2.7735 2.8133 37 1 -2.8462 -5.5894 1.9258 38 1 -0.0806 -6.0512 -0.4185 39 1 -0.8075 -8.8765 0.7333 40 1 -0.5112 -8.4724 -1.0418 41 1 1.8398 -7.7074 -0.4746 42 1 1.5433 -8.1111 1.3003 43 1 2.1192 -5.0310 1.5469 44 1 1.7415 -4.9736 -0.2024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000520108628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:07 Heat of formation + Delta-G solvation = -40.818637 kcal Electronic energy + Delta-G solvation = -25071.145767 eV Core-core repulsion = 21603.482388 eV Total energy + Delta-G solvation = -3467.663379 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56238 -38.76660 -36.72606 -36.37301 -35.28054 -33.08234 -31.90725 -30.57475 -27.71568 -26.99561 -26.51563 -24.72403 -22.54940 -21.84792 -21.17907 -20.73965 -19.37128 -18.91094 -17.17473 -16.87872 -16.57674 -15.79055 -15.18353 -14.82884 -14.64504 -14.14338 -14.02462 -13.92322 -13.71325 -13.44499 -13.13742 -12.88422 -12.75247 -12.61788 -12.38376 -11.87283 -11.81609 -11.53265 -11.33004 -11.20812 -11.01531 -10.93175 -10.83622 -10.78260 -10.74458 -10.27370 -10.13967 -9.91076 -9.78510 -9.63251 -8.75815 -8.52858 -8.21345 -7.43976 -6.46810 -3.99094 2.75962 3.12856 3.37425 3.47949 3.61893 3.73396 4.17756 4.47057 4.57042 4.63428 4.73983 4.76895 4.88257 4.95457 5.09281 5.23825 5.32974 5.37394 5.42933 5.44870 5.52722 5.58655 5.61076 5.66289 5.71429 5.73657 5.81872 5.85280 5.88246 5.96385 6.04352 6.12236 6.17899 6.22994 6.30939 6.32376 6.60120 6.69336 6.81531 7.25542 7.81151 8.30310 8.34104 8.68285 9.05052 9.45448 9.94626 10.81784 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019173 B = 0.004812 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.071508 B = 5816.787887 C = 6676.528273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.144 4.144 4 C 0.130 3.870 5 N -0.616 5.616 6 C 0.116 3.884 7 C -0.115 4.115 8 H 0.097 0.903 9 C 0.471 3.529 10 O -0.534 6.534 11 N -0.424 5.424 12 C -0.429 4.429 13 H 0.072 0.928 14 C 0.042 3.958 15 N -0.844 5.844 16 Si 1.076 2.924 17 H -0.290 1.290 18 H -0.286 1.286 19 H -0.281 1.281 20 C 0.065 3.935 21 C -0.172 4.172 22 C -0.201 4.201 23 C -0.138 4.138 24 C 0.520 3.480 25 O -0.543 6.543 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.270 0.730 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.107 0.893 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.131 7.572 -6.487 11.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 C -0.202 4.202 4 C 0.008 3.992 5 N -0.349 5.349 6 C -0.007 4.007 7 C -0.138 4.138 8 H 0.115 0.885 9 C 0.258 3.742 10 O -0.413 6.413 11 N -0.144 5.144 12 C -0.555 4.555 13 H 0.090 0.910 14 C -0.171 4.171 15 N -0.475 5.475 16 Si 0.903 3.097 17 H -0.217 1.217 18 H -0.212 1.212 19 H -0.206 1.206 20 C -0.041 4.041 21 C -0.210 4.210 22 C -0.240 4.240 23 C -0.178 4.178 24 C 0.308 3.692 25 O -0.421 6.421 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.125 0.875 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.419 7.927 -4.914 10.787 hybrid contribution 1.010 -0.025 -1.548 1.849 sum 6.429 7.902 -6.462 12.064 Atomic orbital electron populations 1.21957 0.94853 1.02340 1.01678 1.21543 0.96505 0.96288 0.99034 1.21764 1.01043 0.95426 1.01920 1.21436 1.00556 0.79362 0.97815 1.48345 1.21058 1.07400 1.58138 1.22114 0.85335 0.93246 0.99978 1.22160 0.96160 0.95290 1.00148 0.88529 1.19579 0.83562 0.83456 0.87567 1.90622 1.50484 1.77089 1.23094 1.42902 1.54057 1.06673 1.10760 1.19788 1.11374 1.00301 1.24083 0.91041 1.26176 0.91008 0.96951 1.02941 1.70569 1.34671 1.23796 1.18435 0.83420 0.75826 0.75139 0.75268 1.21693 1.21190 1.20613 1.21821 1.01040 0.91974 0.89245 1.23102 0.98546 0.98086 1.01245 1.23297 0.91705 1.06411 1.02587 1.22366 0.94590 0.95752 1.05139 1.20988 0.84575 0.87091 0.76554 1.90673 1.20602 1.85193 1.45641 0.92805 0.92000 0.92541 0.90906 0.92562 0.92477 0.92509 0.90332 0.90206 0.89975 0.89111 0.91967 0.87935 0.87338 0.89704 0.89560 0.88936 0.87469 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.57 37.16 0.32 -1.28 16 2 C -0.11 -1.24 3.13 -90.62 -0.28 -1.53 16 3 C -0.14 -1.26 9.19 37.16 0.34 -0.92 16 4 C 0.13 1.60 5.35 -4.04 -0.02 1.57 16 5 N -0.62 -9.09 2.71 -172.42 -0.47 -9.56 16 6 C 0.12 1.84 6.10 -3.12 -0.02 1.82 16 7 C -0.12 -1.98 2.61 -90.14 -0.24 -2.22 16 8 H 0.10 1.52 7.72 -51.93 -0.40 1.12 16 9 C 0.47 10.76 5.76 -10.98 -0.06 10.69 16 10 O -0.53 -14.42 13.51 5.55 0.07 -14.35 16 11 N -0.42 -9.76 2.58 -107.73 -0.28 -10.03 16 12 C -0.43 -11.19 7.80 -14.93 -0.12 -11.31 16 13 H 0.07 1.85 7.36 -52.48 -0.39 1.46 16 14 C 0.04 1.15 4.23 -17.47 -0.07 1.08 16 15 N -0.84 -24.44 12.42 55.50 0.69 -23.75 16 16 Si 1.08 24.78 29.98 -169.99 -5.10 19.69 16 17 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 18 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 C 0.06 1.19 4.56 -67.93 -0.31 0.88 16 21 C -0.17 -2.94 9.80 -26.73 -0.26 -3.20 16 22 C -0.20 -3.25 10.33 -26.73 -0.28 -3.53 16 23 C -0.14 -2.20 5.17 -26.75 -0.14 -2.34 16 24 C 0.52 8.67 8.02 -10.86 -0.09 8.58 16 25 O -0.54 -10.47 17.59 5.56 0.10 -10.38 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.73 5.65 -51.93 -0.29 0.44 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 35 H 0.08 1.20 5.90 -51.93 -0.31 0.89 16 36 H 0.09 1.63 7.06 -51.93 -0.37 1.27 16 37 H 0.27 7.84 7.43 -40.82 -0.30 7.54 16 38 H 0.10 1.66 6.37 -51.93 -0.33 1.33 16 39 H 0.11 2.10 6.77 -51.93 -0.35 1.74 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 43 H 0.11 1.84 7.89 -51.92 -0.41 1.43 16 44 H 0.10 1.48 7.09 -51.93 -0.37 1.11 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -32.01 349.32 -7.89 -39.91 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.95 Total: 4.90 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -1.23 Total: -1.69 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -0.06 Total: -43.35 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.17 Total: -24.72 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.10 Total: 19.69 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.01 -7.89 -39.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520108628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.913 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds