Wall clock time and date at job start Tue Mar 31 2020 07:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47275 * 2 1 4 4 C 1.53002 * 109.47359 * 119.99930 * 2 1 3 5 5 N 1.46500 * 109.46964 * 64.99893 * 4 2 1 6 6 C 1.46762 * 124.35120 * 270.00282 * 5 4 2 7 7 C 1.54479 * 105.47460 * 162.96304 * 6 5 4 8 8 H 1.08999 * 111.00206 * 267.27693 * 7 6 5 9 9 C 1.50706 * 110.96739 * 143.53485 * 7 6 5 10 10 O 1.21288 * 119.99964 * 6.16908 * 9 7 6 11 11 N 1.34779 * 119.99414 * 186.16558 * 9 7 6 12 12 C 1.37105 * 119.99268 * 179.97438 * 11 9 7 13 13 H 1.08005 * 119.99926 * 224.34487 * 12 11 9 14 14 C 1.38945 * 120.00271 * 44.35049 * 12 11 9 15 15 N 1.31417 * 120.00049 * 22.87599 * 14 12 11 16 16 Si 1.86799 * 120.00292 * 202.86960 * 14 12 11 17 17 H 1.48499 * 109.47146 * 270.00452 * 16 14 12 18 18 H 1.48507 * 109.46754 * 30.00078 * 16 14 12 19 19 H 1.48497 * 109.47100 * 149.99841 * 16 14 12 20 20 C 1.46490 * 120.00406 * 0.02562 * 11 9 7 21 21 C 1.53003 * 117.50250 * 184.74939 * 20 11 9 22 22 C 1.52994 * 60.00012 * 252.51075 * 21 20 11 23 23 C 1.54620 * 101.76623 * 25.41279 * 7 6 5 24 24 C 1.34425 * 124.35003 * 89.97727 * 5 4 2 25 25 O 1.21283 * 124.94024 * 0.38940 * 24 5 4 26 26 H 1.08995 * 109.46806 * 60.00344 * 1 2 3 27 27 H 1.09000 * 109.46988 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47105 * 300.00107 * 1 2 3 29 29 H 1.09004 * 109.47188 * 240.00362 * 2 1 3 30 30 H 1.08993 * 109.47395 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46697 * 299.99952 * 3 2 1 32 32 H 1.08999 * 109.47141 * 59.99915 * 3 2 1 33 33 H 1.08996 * 109.46672 * 305.00503 * 4 2 1 34 34 H 1.08997 * 109.47267 * 184.99670 * 4 2 1 35 35 H 1.08997 * 110.24716 * 43.96048 * 6 5 4 36 36 H 1.08999 * 110.24407 * 281.96142 * 6 5 4 37 37 H 0.96999 * 119.99514 * 5.62280 * 15 14 12 38 38 H 1.09001 * 115.55243 * 330.45469 * 20 11 9 39 39 H 1.09004 * 117.49445 * 359.97438 * 21 20 11 40 40 H 1.09000 * 117.50358 * 145.01301 * 21 20 11 41 41 H 1.09001 * 117.49480 * 252.50417 * 22 21 20 42 42 H 1.09001 * 117.51854 * 107.47858 * 22 21 20 43 43 H 1.09010 * 110.48392 * 93.88110 * 23 7 6 44 44 H 1.09001 * 110.49079 * 216.38695 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 1.6525 -2.1328 1.1906 6 6 0.3981 -2.6703 1.7304 7 6 0.2262 -4.0567 1.0712 8 1 -0.3717 -3.9858 0.1626 9 6 -0.3805 -5.0417 2.0371 10 8 -0.7646 -4.6664 3.1247 11 7 -0.4964 -6.3394 1.6923 12 6 -1.0479 -7.2356 2.5713 13 1 -0.5839 -8.1991 2.7223 14 6 -2.2036 -6.9042 3.2677 15 7 -3.0123 -5.9812 2.7974 16 14 -2.6082 -7.7709 4.8722 17 1 -3.4225 -8.9802 4.5900 18 1 -1.3488 -8.1693 5.5508 19 1 -3.3749 -6.8520 5.7515 20 6 -0.0320 -6.7927 0.3789 21 6 -0.2916 -8.2529 0.0030 22 6 1.1264 -7.7915 0.3452 23 6 1.6894 -4.4333 0.7428 24 6 2.3999 -3.1021 0.6349 25 8 3.4856 -2.9338 0.1211 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6054 -0.2617 2.1369 34 1 3.1264 -0.6444 1.2951 35 1 -0.4358 -2.0205 1.4652 36 1 0.4671 -2.7735 2.8133 37 1 -2.8462 -5.5894 1.9258 38 1 -0.0806 -6.0512 -0.4185 39 1 -0.8075 -8.8765 0.7333 40 1 -0.5112 -8.4724 -1.0418 41 1 1.8398 -7.7074 -0.4746 42 1 1.5433 -8.1111 1.3003 43 1 2.1192 -5.0310 1.5469 44 1 1.7415 -4.9736 -0.2024 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000520108628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:06 Heat of formation + Delta-G solvation = -59.593840 kcal Electronic energy + Delta-G solvation = -25071.959920 eV Core-core repulsion = 21603.482388 eV Total energy + Delta-G solvation = -3468.477533 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.94396 -40.38324 -38.10882 -37.71149 -36.55757 -34.93112 -33.30581 -32.26015 -28.89053 -28.07887 -27.66893 -26.41603 -24.07512 -23.19146 -22.72366 -21.76470 -20.91865 -20.25053 -18.77306 -18.50396 -17.89188 -17.06138 -16.67370 -16.31027 -15.88793 -15.74934 -15.50392 -15.30502 -15.13673 -14.82686 -14.45867 -14.36460 -13.86517 -13.84340 -13.42145 -13.23754 -13.11668 -12.77878 -12.68043 -12.51900 -12.39493 -12.27796 -12.15736 -11.99468 -11.84961 -11.82283 -11.70708 -11.65911 -11.28758 -11.01151 -10.64540 -10.07489 -9.74011 -9.31106 -8.52960 -6.04678 1.43510 1.51130 1.62249 1.78287 1.90908 2.04182 2.44730 2.84390 3.08075 3.22471 3.33513 3.45483 3.77520 3.83977 3.89483 3.92911 4.04941 4.11488 4.19367 4.25354 4.36345 4.43287 4.45773 4.54653 4.59481 4.74016 4.76933 4.81671 4.85828 4.91440 4.98371 4.98847 5.01596 5.20502 5.22003 5.30630 5.38696 5.42934 5.55074 5.78235 5.98820 6.21629 6.82611 7.04234 7.15406 7.52466 8.10830 8.72969 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019173 B = 0.004812 C = 0.004193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.071508 B = 5816.787887 C = 6676.528273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.139 4.139 4 C 0.123 3.877 5 N -0.607 5.607 6 C 0.124 3.876 7 C -0.104 4.104 8 H 0.119 0.881 9 C 0.465 3.535 10 O -0.585 6.585 11 N -0.439 5.439 12 C -0.433 4.433 13 H 0.066 0.934 14 C -0.003 4.003 15 N -0.876 5.876 16 Si 1.112 2.888 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.292 1.292 20 C 0.042 3.958 21 C -0.171 4.171 22 C -0.178 4.178 23 C -0.127 4.127 24 C 0.519 3.481 25 O -0.570 6.570 26 H 0.064 0.936 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.098 0.902 36 H 0.067 0.933 37 H 0.257 0.743 38 H 0.131 0.869 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.124 0.876 42 H 0.072 0.928 43 H 0.094 0.906 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 8.032 -8.028 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.197 4.197 4 C 0.002 3.998 5 N -0.339 5.339 6 C 0.001 3.999 7 C -0.126 4.126 8 H 0.137 0.863 9 C 0.254 3.746 10 O -0.467 6.467 11 N -0.158 5.158 12 C -0.560 4.560 13 H 0.084 0.916 14 C -0.210 4.210 15 N -0.509 5.509 16 Si 0.935 3.065 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.218 1.218 20 C -0.062 4.062 21 C -0.209 4.209 22 C -0.217 4.217 23 C -0.168 4.168 24 C 0.308 3.692 25 O -0.450 6.450 26 H 0.083 0.917 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.149 0.851 39 H 0.098 0.902 40 H 0.136 0.864 41 H 0.142 0.858 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.211 8.368 -6.483 12.273 hybrid contribution 0.850 -0.177 -1.079 1.385 sum 7.060 8.191 -7.562 13.196 Atomic orbital electron populations 1.21943 0.94447 1.01657 1.02631 1.21469 0.96737 0.97251 0.97295 1.21734 1.01101 0.93932 1.02946 1.21702 1.00576 0.78041 0.99456 1.48378 1.20216 1.08316 1.57002 1.21955 0.86292 0.93100 0.98506 1.22006 0.96856 0.94269 0.99440 0.86304 1.20399 0.82377 0.84069 0.87790 1.90586 1.52456 1.78146 1.25534 1.43083 1.53828 1.06585 1.12343 1.19886 1.10815 1.00469 1.24804 0.91623 1.27285 0.91433 0.97103 1.05131 1.70677 1.35927 1.25923 1.18337 0.82969 0.76105 0.75039 0.72387 1.19126 1.20425 1.21791 1.22122 1.03006 0.93420 0.87700 1.23137 0.99022 0.96373 1.02343 1.23301 0.91639 1.03823 1.02893 1.22294 0.93079 0.95616 1.05768 1.21018 0.84274 0.87537 0.76404 1.90663 1.21676 1.85554 1.47105 0.91724 0.93422 0.91784 0.92610 0.92491 0.91548 0.91405 0.88692 0.90582 0.88358 0.91434 0.93362 0.85129 0.90231 0.86405 0.85767 0.90897 0.88764 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 8.57 71.98 0.62 -2.22 16 2 C -0.11 -2.15 3.13 -10.79 -0.03 -2.18 16 3 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 4 C 0.12 2.82 5.35 86.38 0.46 3.29 16 5 N -0.61 -17.16 2.71 -818.00 -2.21 -19.38 16 6 C 0.12 3.86 6.10 86.83 0.53 4.38 16 7 C -0.10 -3.45 2.61 -10.48 -0.03 -3.48 16 8 H 0.12 3.47 7.72 -2.39 -0.02 3.45 16 9 C 0.46 21.36 5.76 87.66 0.51 21.87 16 10 O -0.58 -32.49 13.51 -3.06 -0.04 -32.53 16 11 N -0.44 -20.20 2.58 -613.13 -1.58 -21.78 16 12 C -0.43 -22.91 7.80 84.04 0.66 -22.25 16 13 H 0.07 3.46 7.36 -2.91 -0.02 3.44 16 14 C 0.00 -0.14 4.23 84.92 0.36 0.21 16 15 N -0.88 -52.02 12.42 21.66 0.27 -51.75 16 16 Si 1.11 50.75 29.98 68.60 2.06 52.81 16 17 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 18 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 19 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 20 C 0.04 1.47 4.56 44.99 0.21 1.67 16 21 C -0.17 -5.51 9.80 30.59 0.30 -5.21 16 22 C -0.18 -5.29 10.33 30.59 0.32 -4.98 16 23 C -0.13 -3.84 5.17 30.58 0.16 -3.68 16 24 C 0.52 16.59 8.02 87.90 0.71 17.29 16 25 O -0.57 -21.24 17.59 -3.04 -0.05 -21.29 16 26 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.05 1.03 5.65 -2.39 -0.01 1.02 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.31 8.14 -2.38 -0.02 1.30 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.08 1.83 7.92 -2.39 -0.02 1.81 16 35 H 0.10 2.75 5.90 -2.39 -0.01 2.73 16 36 H 0.07 2.46 7.06 -2.39 -0.02 2.45 16 37 H 0.26 15.36 7.43 -92.71 -0.69 14.67 16 38 H 0.13 3.80 6.37 -2.39 -0.02 3.78 16 39 H 0.08 3.05 6.77 -2.39 -0.02 3.03 16 40 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 41 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 42 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 43 H 0.09 3.14 7.89 -2.38 -0.02 3.12 16 44 H 0.13 3.20 7.09 -2.39 -0.02 3.18 16 Total: -1.00 -71.56 349.32 4.91 -66.65 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.07 Total: 24.01 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.41 Total: 3.27 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -3.53 Total: -92.91 kcal Atomic # 8 Polarization: -53.73 SS G_CDS: -0.09 Total: -53.83 kcal Atomic # 14 Polarization: 50.75 SS G_CDS: 2.06 Total: 52.81 kcal Total: -71.56 4.91 -66.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000520108628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.056 kcal (2) G-P(sol) polarization free energy of solvation -71.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds