Wall clock time and date at job start Tue Mar 31 2020 06:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34250 * 126.52478 * 2 1 4 4 C 1.34055 * 108.22817 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.37721 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46886 * 60.02500 * 5 4 3 7 7 C 1.52995 * 109.47080 * 300.02427 * 5 4 3 8 8 N 1.29932 * 109.23947 * 0.23933 * 4 3 2 9 9 C 1.36059 * 108.48134 * 359.61339 * 8 4 3 10 10 C 1.47420 * 126.45302 * 180.15316 * 9 8 4 11 11 O 1.21612 * 120.00197 * 174.58442 * 10 9 8 12 12 N 1.34783 * 119.99609 * 354.58101 * 10 9 8 13 13 C 1.46497 * 119.99834 * 4.32577 * 12 10 9 14 14 C 1.50700 * 109.47401 * 83.43457 * 13 12 10 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00153 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00180 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00122 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47008 * 89.99734 * 18 16 14 20 20 H 1.48505 * 109.47231 * 209.99809 * 18 16 14 21 21 H 1.48502 * 109.46922 * 330.00010 * 18 16 14 22 22 C 1.46503 * 119.99586 * 184.32116 * 12 10 9 23 23 C 1.52999 * 109.46561 * 124.68396 * 22 12 10 24 24 C 1.52999 * 109.47015 * 244.68208 * 22 12 10 25 25 H 1.08998 * 109.47404 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46906 * 119.98327 * 1 2 3 27 27 H 1.09004 * 109.47232 * 239.97783 * 1 2 3 28 28 H 1.08998 * 109.46977 * 180.02562 * 5 4 3 29 29 H 1.09008 * 109.47546 * 60.00139 * 6 5 4 30 30 H 1.08998 * 109.47249 * 299.99756 * 6 5 4 31 31 H 1.08999 * 109.46708 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47197 * 299.99849 * 7 5 4 33 33 H 1.08998 * 109.47219 * 60.00143 * 7 5 4 34 34 H 1.08999 * 109.46894 * 180.02562 * 7 5 4 35 35 H 1.09005 * 109.46776 * 203.43421 * 13 12 10 36 36 H 1.08996 * 109.47056 * 323.42942 * 13 12 10 37 37 H 0.96994 * 119.99920 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47319 * 4.68883 * 22 12 10 39 39 H 1.09005 * 109.47343 * 60.00108 * 23 22 12 40 40 H 1.09006 * 109.47026 * 179.97438 * 23 22 12 41 41 H 1.08997 * 109.47409 * 299.99547 * 23 22 12 42 42 H 1.08999 * 109.47007 * 60.00127 * 24 22 12 43 43 H 1.08998 * 109.46652 * 180.02562 * 24 22 12 44 44 H 1.09005 * 109.47307 * 300.00148 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5788 0.6580 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.7775 2.4336 1.2481 7 6 4.7757 2.4341 -1.2503 8 7 3.6002 -0.6411 -0.0060 9 6 2.3170 -1.0937 -0.0005 10 6 1.8853 -2.5032 -0.0006 11 8 0.7053 -2.7778 0.1041 12 7 2.7986 -3.4876 -0.1169 13 6 4.2266 -3.1621 -0.1478 14 6 4.7370 -3.0064 1.2616 15 1 4.0649 -3.1373 2.0968 16 6 6.0620 -2.6978 1.4848 17 7 6.5073 -2.5615 2.7148 18 14 7.2247 -2.4720 0.0402 19 1 7.2212 -1.0477 -0.3800 20 1 8.5984 -2.8657 0.4442 21 1 6.7785 -3.3232 -1.0919 22 6 2.3631 -4.8832 -0.2123 23 6 2.9472 -5.5142 -1.4779 24 6 2.8521 -5.6551 1.0148 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5136 -0.8902 27 1 -0.3634 -0.5142 0.8898 28 1 5.6944 0.9380 -0.0021 29 1 4.7898 1.8043 2.1380 30 1 3.8760 3.0464 1.2489 31 1 5.6559 3.0790 1.2478 32 1 4.7867 1.8051 -2.1405 33 1 3.8742 3.0468 -1.2496 34 1 5.6541 3.0795 -1.2511 35 1 4.7715 -3.9646 -0.6450 36 1 4.3750 -2.2300 -0.6930 37 1 7.4395 -2.3440 2.8718 38 1 1.2747 -4.9220 -0.2562 39 1 4.0357 -5.4754 -1.4341 40 1 2.6236 -6.5527 -1.5487 41 1 2.5989 -4.9643 -2.3521 42 1 2.4360 -5.2055 1.9164 43 1 2.5285 -6.6934 0.9435 44 1 3.9406 -5.6163 1.0586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000551967305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:48 Heat of formation + Delta-G solvation = -16.263076 kcal Electronic energy + Delta-G solvation = -25498.735557 eV Core-core repulsion = 22032.136987 eV Total energy + Delta-G solvation = -3466.598570 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.92433 -39.10805 -35.93706 -35.45014 -34.33360 -32.59693 -31.59660 -31.25280 -27.73256 -27.13251 -26.76888 -26.66200 -23.67120 -22.44485 -22.26513 -21.14963 -19.65769 -18.12157 -16.84632 -16.76353 -16.36118 -15.94629 -15.32938 -14.80922 -14.39248 -14.17976 -13.83528 -13.54739 -13.24163 -13.14131 -13.09839 -12.68463 -12.47701 -12.41990 -12.37965 -12.15941 -11.81711 -11.65994 -11.60201 -11.44364 -11.19700 -10.94806 -10.90313 -10.78089 -10.64165 -10.47195 -10.16909 -10.04180 -9.63560 -9.33220 -9.18974 -8.43668 -8.30453 -7.59736 -5.97440 -3.91248 1.60548 2.68453 2.92224 3.30971 3.37331 3.40118 3.75507 4.00812 4.30553 4.48128 4.91649 5.10449 5.14874 5.17791 5.35922 5.39735 5.46634 5.55588 5.64044 5.64624 5.70846 5.73325 5.79902 5.82532 5.92115 6.01205 6.09364 6.15900 6.20769 6.31761 6.32855 6.33317 6.37463 6.40029 6.51111 6.73763 6.74133 7.03795 7.22206 7.55704 7.74037 8.12463 8.26140 8.61381 8.91952 9.07193 9.65042 11.16377 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.008671 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.947166 B = 3228.390989 C = 4942.547236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.010 3.990 3 O -0.201 6.201 4 C 0.177 3.823 5 C 0.003 3.997 6 C -0.147 4.147 7 C -0.147 4.147 8 N -0.399 5.399 9 C -0.050 4.050 10 C 0.601 3.399 11 O -0.570 6.570 12 N -0.569 5.569 13 C 0.195 3.805 14 C -0.496 4.496 15 H 0.069 0.931 16 C 0.077 3.923 17 N -0.904 5.904 18 Si 0.870 3.130 19 H -0.273 1.273 20 H -0.292 1.292 21 H -0.269 1.269 22 C 0.135 3.865 23 C -0.159 4.159 24 C -0.153 4.153 25 H 0.070 0.930 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.026 0.974 36 H 0.067 0.933 37 H 0.260 0.740 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 6.556 -8.019 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.046 4.046 3 O -0.090 6.090 4 C -0.031 4.031 5 C -0.016 4.016 6 C -0.205 4.205 7 C -0.205 4.205 8 N -0.127 5.127 9 C -0.171 4.171 10 C 0.389 3.611 11 O -0.451 6.451 12 N -0.298 5.298 13 C 0.074 3.926 14 C -0.535 4.535 15 H 0.088 0.912 16 C -0.124 4.124 17 N -0.544 5.544 18 Si 0.698 3.302 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.194 1.194 22 C 0.032 3.968 23 C -0.217 4.217 24 C -0.211 4.211 25 H 0.089 0.911 26 H 0.109 0.891 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.043 0.957 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.689 6.056 -7.880 11.452 hybrid contribution 0.439 0.500 -0.438 0.797 sum -5.250 6.556 -8.318 11.821 Atomic orbital electron populations 1.20278 0.83227 1.02824 1.04984 1.23504 0.94701 0.83796 1.02598 1.84207 1.18213 1.36210 1.70330 1.26317 0.83485 0.90868 1.02452 1.19699 0.90667 0.94246 0.96997 1.21855 1.02263 0.99375 0.97008 1.21876 1.02556 0.99404 0.96621 1.71371 1.20455 1.07027 1.13820 1.21474 0.88852 0.95358 1.11386 1.16732 0.84852 0.83009 0.76551 1.90676 1.17038 1.83563 1.53863 1.47877 1.08680 1.04787 1.68431 1.20291 0.75571 0.97368 0.99341 1.21144 0.95048 1.46416 0.90895 0.91241 1.24694 0.97746 0.94921 0.94992 1.69910 1.15414 1.49772 1.19294 0.86961 0.80359 0.79152 0.83718 1.19908 1.21787 1.19407 1.20937 0.99752 0.81040 0.95072 1.22147 1.02236 1.00045 0.97294 1.22069 1.03567 0.97958 0.97486 0.91092 0.89087 0.88697 0.86750 0.91402 0.92265 0.91311 0.92146 0.92103 0.91238 0.95654 0.91575 0.92993 0.89334 0.91718 0.91981 0.92954 0.92610 0.93125 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 9.15 36.01 0.33 -0.46 16 2 C 0.01 0.19 7.44 -35.08 -0.26 -0.08 16 3 O -0.20 -3.54 10.73 6.52 0.07 -3.47 16 4 C 0.18 3.32 6.81 -13.08 -0.09 3.23 16 5 C 0.00 0.05 3.39 -91.77 -0.31 -0.26 16 6 C -0.15 -1.97 9.17 37.16 0.34 -1.62 16 7 C -0.15 -1.73 9.17 37.15 0.34 -1.39 16 8 N -0.40 -8.81 7.16 -7.65 -0.05 -8.87 16 9 C -0.05 -1.08 6.65 -83.02 -0.55 -1.63 16 10 C 0.60 13.45 7.60 -12.52 -0.10 13.35 16 11 O -0.57 -12.74 14.97 5.27 0.08 -12.66 16 12 N -0.57 -12.55 2.38 -168.73 -0.40 -12.95 16 13 C 0.19 4.65 3.19 -5.20 -0.02 4.64 16 14 C -0.50 -13.62 8.04 -34.44 -0.28 -13.90 16 15 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 16 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 17 N -0.90 -27.07 13.96 55.43 0.77 -26.30 16 18 Si 0.87 21.01 27.47 -169.99 -4.67 16.34 16 19 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 22 C 0.14 2.55 3.24 -67.93 -0.22 2.33 16 23 C -0.16 -2.53 9.10 37.16 0.34 -2.20 16 24 C -0.15 -2.85 8.92 37.16 0.33 -2.52 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.09 1.36 8.00 -51.93 -0.42 0.95 16 28 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 29 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.03 0.60 5.25 -51.93 -0.27 0.33 16 36 H 0.07 1.62 4.69 -51.93 -0.24 1.38 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.09 1.66 6.93 -51.93 -0.36 1.30 16 39 H 0.06 1.09 6.50 -51.93 -0.34 0.75 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.07 1.56 7.29 -51.93 -0.38 1.18 16 LS Contribution 355.63 15.07 5.36 5.36 Total: -1.00 -32.09 355.63 -6.17 -38.27 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.09 Total: 2.72 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.24 Total: 1.56 kcal Atomic # 7 Polarization: -48.44 SS G_CDS: 0.32 Total: -48.12 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.15 Total: -16.13 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.09 -6.17 -38.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551967305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.006 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds