Wall clock time and date at job start Tue Mar 31 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34250 * 126.52478 * 2 1 4 4 C 1.34055 * 108.22817 * 180.02562 * 3 2 1 5 5 C 1.50706 * 125.37721 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.46886 * 60.02500 * 5 4 3 7 7 C 1.52995 * 109.47080 * 300.02427 * 5 4 3 8 8 N 1.29932 * 109.23947 * 0.23933 * 4 3 2 9 9 C 1.36059 * 108.48134 * 359.61339 * 8 4 3 10 10 C 1.47420 * 126.45302 * 180.15316 * 9 8 4 11 11 O 1.21612 * 120.00197 * 174.58442 * 10 9 8 12 12 N 1.34783 * 119.99609 * 354.58101 * 10 9 8 13 13 C 1.46497 * 119.99834 * 4.32577 * 12 10 9 14 14 C 1.50700 * 109.47401 * 83.43457 * 13 12 10 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00153 * 179.97438 * 14 13 12 17 17 N 1.31521 * 120.00180 * 179.97438 * 16 14 13 18 18 Si 1.86804 * 120.00122 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.47008 * 89.99734 * 18 16 14 20 20 H 1.48505 * 109.47231 * 209.99809 * 18 16 14 21 21 H 1.48502 * 109.46922 * 330.00010 * 18 16 14 22 22 C 1.46503 * 119.99586 * 184.32116 * 12 10 9 23 23 C 1.52999 * 109.46561 * 124.68396 * 22 12 10 24 24 C 1.52999 * 109.47015 * 244.68208 * 22 12 10 25 25 H 1.08998 * 109.47404 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46906 * 119.98327 * 1 2 3 27 27 H 1.09004 * 109.47232 * 239.97783 * 1 2 3 28 28 H 1.08998 * 109.46977 * 180.02562 * 5 4 3 29 29 H 1.09008 * 109.47546 * 60.00139 * 6 5 4 30 30 H 1.08998 * 109.47249 * 299.99756 * 6 5 4 31 31 H 1.08999 * 109.46708 * 179.97438 * 6 5 4 32 32 H 1.09001 * 109.47197 * 299.99849 * 7 5 4 33 33 H 1.08998 * 109.47219 * 60.00143 * 7 5 4 34 34 H 1.08999 * 109.46894 * 180.02562 * 7 5 4 35 35 H 1.09005 * 109.46776 * 203.43421 * 13 12 10 36 36 H 1.08996 * 109.47056 * 323.42942 * 13 12 10 37 37 H 0.96994 * 119.99920 * 180.02562 * 17 16 14 38 38 H 1.09000 * 109.47319 * 4.68883 * 22 12 10 39 39 H 1.09005 * 109.47343 * 60.00108 * 23 22 12 40 40 H 1.09006 * 109.47026 * 179.97438 * 23 22 12 41 41 H 1.08997 * 109.47409 * 299.99547 * 23 22 12 42 42 H 1.08999 * 109.47007 * 60.00127 * 24 22 12 43 43 H 1.08998 * 109.46652 * 180.02562 * 24 22 12 44 44 H 1.09005 * 109.47307 * 300.00148 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5788 0.6580 -0.0006 5 6 4.7930 1.5507 -0.0013 6 6 4.7775 2.4336 1.2481 7 6 4.7757 2.4341 -1.2503 8 7 3.6002 -0.6411 -0.0060 9 6 2.3170 -1.0937 -0.0005 10 6 1.8853 -2.5032 -0.0006 11 8 0.7053 -2.7778 0.1041 12 7 2.7986 -3.4876 -0.1169 13 6 4.2266 -3.1621 -0.1478 14 6 4.7370 -3.0064 1.2616 15 1 4.0649 -3.1373 2.0968 16 6 6.0620 -2.6978 1.4848 17 7 6.5073 -2.5615 2.7148 18 14 7.2247 -2.4720 0.0402 19 1 7.2212 -1.0477 -0.3800 20 1 8.5984 -2.8657 0.4442 21 1 6.7785 -3.3232 -1.0919 22 6 2.3631 -4.8832 -0.2123 23 6 2.9472 -5.5142 -1.4779 24 6 2.8521 -5.6551 1.0148 25 1 -0.3634 1.0276 0.0005 26 1 -0.3633 -0.5136 -0.8902 27 1 -0.3634 -0.5142 0.8898 28 1 5.6944 0.9380 -0.0021 29 1 4.7898 1.8043 2.1380 30 1 3.8760 3.0464 1.2489 31 1 5.6559 3.0790 1.2478 32 1 4.7867 1.8051 -2.1405 33 1 3.8742 3.0468 -1.2496 34 1 5.6541 3.0795 -1.2511 35 1 4.7715 -3.9646 -0.6450 36 1 4.3750 -2.2300 -0.6930 37 1 7.4395 -2.3440 2.8718 38 1 1.2747 -4.9220 -0.2562 39 1 4.0357 -5.4754 -1.4341 40 1 2.6236 -6.5527 -1.5487 41 1 2.5989 -4.9643 -2.3521 42 1 2.4360 -5.2055 1.9164 43 1 2.5285 -6.6934 0.9435 44 1 3.9406 -5.6163 1.0586 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000551967305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:47 Heat of formation + Delta-G solvation = -37.029495 kcal Electronic energy + Delta-G solvation = -25499.636057 eV Core-core repulsion = 22032.136987 eV Total energy + Delta-G solvation = -3467.499069 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.39385 -40.79077 -37.58329 -36.66840 -35.85277 -34.64870 -32.96759 -32.88569 -29.71930 -28.15062 -28.11716 -28.08375 -25.17617 -24.41662 -23.64075 -22.57994 -21.10344 -19.74793 -18.96181 -18.41181 -17.86979 -17.44351 -16.84941 -16.27188 -16.09582 -15.72252 -15.30241 -15.00459 -14.84708 -14.49439 -14.40417 -14.33517 -13.99805 -13.82806 -13.73780 -13.34570 -13.26463 -13.06415 -13.01749 -12.67294 -12.63132 -12.47384 -12.36552 -12.30351 -12.05737 -11.95978 -11.91789 -11.77345 -11.47523 -11.26369 -10.89352 -10.54248 -9.81732 -9.33560 -8.16611 -6.15032 0.11989 1.13294 1.38587 1.40292 1.48946 1.52684 2.14484 2.36198 2.42878 2.93279 3.20317 3.60547 3.67924 3.94201 4.01604 4.06335 4.21058 4.22167 4.30525 4.36853 4.48838 4.59721 4.60214 4.73821 4.77583 4.78425 4.84878 4.86978 4.89585 4.94386 4.96229 5.04425 5.08391 5.09540 5.25368 5.29034 5.31547 5.41417 5.42670 5.62812 5.82354 6.27418 6.53877 6.69797 6.82065 7.20888 7.45698 9.01017 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011338 B = 0.008671 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.947166 B = 3228.390989 C = 4942.547236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.029 3.971 3 O -0.191 6.191 4 C 0.181 3.819 5 C -0.002 4.002 6 C -0.141 4.141 7 C -0.137 4.137 8 N -0.445 5.445 9 C -0.098 4.098 10 C 0.592 3.408 11 O -0.577 6.577 12 N -0.578 5.578 13 C 0.211 3.789 14 C -0.485 4.485 15 H 0.015 0.985 16 C 0.025 3.975 17 N -0.952 5.952 18 Si 0.930 3.070 19 H -0.257 1.257 20 H -0.290 1.290 21 H -0.251 1.251 22 C 0.126 3.874 23 C -0.150 4.150 24 C -0.143 4.143 25 H 0.107 0.893 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.035 0.965 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.262 0.738 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.025 0.975 43 H 0.090 0.910 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 7.782 -10.430 14.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.028 4.028 3 O -0.079 6.079 4 C -0.029 4.029 5 C -0.021 4.021 6 C -0.199 4.199 7 C -0.195 4.195 8 N -0.172 5.172 9 C -0.217 4.217 10 C 0.381 3.619 11 O -0.460 6.460 12 N -0.307 5.307 13 C 0.089 3.911 14 C -0.523 4.523 15 H 0.033 0.967 16 C -0.172 4.172 17 N -0.594 5.594 18 Si 0.754 3.246 19 H -0.181 1.181 20 H -0.216 1.216 21 H -0.175 1.175 22 C 0.024 3.976 23 C -0.207 4.207 24 C -0.201 4.201 25 H 0.126 0.874 26 H 0.119 0.881 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.054 0.946 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.114 0.886 41 H 0.076 0.924 42 H 0.045 0.955 43 H 0.109 0.891 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.994 7.264 -10.307 13.962 hybrid contribution 0.412 0.134 0.422 0.605 sum -5.581 7.397 -9.885 13.550 Atomic orbital electron populations 1.20470 0.80161 1.05333 1.05075 1.24202 0.96188 0.82928 0.99471 1.84238 1.17860 1.35728 1.70055 1.27022 0.84597 0.90574 1.00676 1.19952 0.88156 0.94271 0.99747 1.21839 1.04500 0.98973 0.94588 1.21849 1.04526 0.98981 0.94156 1.71222 1.21289 1.08881 1.15835 1.21589 0.89682 0.95770 1.14693 1.17013 0.84936 0.83714 0.76258 1.90639 1.17059 1.83946 1.54400 1.47972 1.07893 1.06194 1.68610 1.19976 0.76783 0.97569 0.96758 1.21103 0.94317 1.45724 0.91192 0.96688 1.25470 0.99454 0.94540 0.97699 1.70067 1.15951 1.51546 1.21878 0.85984 0.77716 0.80308 0.80557 1.18129 1.21645 1.17533 1.21227 1.00120 0.79727 0.96551 1.22078 1.01267 1.01855 0.95527 1.21984 1.01579 1.00185 0.96391 0.87395 0.88133 0.89145 0.88875 0.94572 0.90779 0.88304 0.92684 0.90905 0.88441 0.94922 0.91474 0.92932 0.89066 0.92773 0.88561 0.92385 0.95545 0.89137 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.40 9.15 71.24 0.65 -0.75 16 2 C 0.03 1.04 7.44 25.19 0.19 1.22 16 3 O -0.19 -6.48 10.73 0.40 0.00 -6.47 16 4 C 0.18 6.70 6.81 88.39 0.60 7.30 16 5 C 0.00 -0.05 3.39 -11.54 -0.04 -0.09 16 6 C -0.14 -3.57 9.17 71.98 0.66 -2.91 16 7 C -0.14 -2.85 9.17 71.98 0.66 -2.19 16 8 N -0.44 -19.95 7.16 -293.03 -2.10 -22.05 16 9 C -0.10 -4.28 6.65 40.41 0.27 -4.01 16 10 C 0.59 27.06 7.60 86.66 0.66 27.72 16 11 O -0.58 -26.09 14.97 -4.07 -0.06 -26.15 16 12 N -0.58 -26.00 2.38 -805.99 -1.91 -27.92 16 13 C 0.21 10.23 3.19 85.63 0.27 10.50 16 14 C -0.48 -27.78 8.04 25.60 0.21 -27.57 16 15 H 0.01 0.99 8.06 -2.91 -0.02 0.97 16 16 C 0.02 1.43 5.47 84.65 0.46 1.90 16 17 N -0.95 -59.33 13.96 21.44 0.30 -59.03 16 18 Si 0.93 43.47 27.47 68.60 1.88 45.36 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.54 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 21 H -0.25 -10.95 6.54 99.48 0.65 -10.30 16 22 C 0.13 4.73 3.24 44.99 0.15 4.87 16 23 C -0.15 -4.47 9.10 71.98 0.65 -3.82 16 24 C -0.14 -5.43 8.92 71.98 0.64 -4.79 16 25 H 0.11 1.99 8.14 -2.39 -0.02 1.98 16 26 H 0.10 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.09 2.49 8.00 -2.39 -0.02 2.47 16 28 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 29 H 0.04 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.03 1.54 5.25 -2.38 -0.01 1.53 16 36 H 0.07 3.33 4.69 -2.39 -0.01 3.31 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 38 H 0.09 3.37 6.93 -2.39 -0.02 3.36 16 39 H 0.05 1.73 6.50 -2.38 -0.02 1.72 16 40 H 0.10 2.21 8.14 -2.38 -0.02 2.19 16 41 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.05 2.13 7.29 -2.38 -0.02 2.11 16 Total: -1.00 -73.86 355.63 5.07 -68.79 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.93 Total: 20.09 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 6.03 Total: 7.39 kcal Atomic # 7 Polarization: -105.28 SS G_CDS: -3.71 Total: -109.00 kcal Atomic # 8 Polarization: -32.57 SS G_CDS: -0.06 Total: -32.62 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.88 Total: 45.36 kcal Total: -73.86 5.07 -68.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000551967305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.756 kcal (2) G-P(sol) polarization free energy of solvation -73.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds