Wall clock time and date at job start Tue Mar 31 2020 07:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99706 * 2 1 4 4 H 1.09000 * 109.48145 * 359.97400 * 3 2 1 5 5 O 1.42905 * 109.47973 * 239.93827 * 3 2 1 6 6 C 1.42904 * 114.09747 * 178.86143 * 5 3 2 7 7 C 1.53090 * 109.41572 * 61.15743 * 6 5 3 8 8 C 1.53175 * 109.16309 * 302.39085 * 7 6 5 9 9 C 1.53097 * 109.48083 * 119.99693 * 3 2 1 10 10 H 1.09005 * 109.51907 * 57.68473 * 9 3 2 11 11 N 1.46499 * 109.52183 * 297.49569 * 9 3 2 12 12 C 1.34775 * 119.99746 * 154.99943 * 11 9 3 13 13 O 1.21589 * 120.00220 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00035 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00140 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47019 * 181.14118 * 15 14 12 17 17 C 1.50704 * 115.54684 * 39.68534 * 16 15 14 18 18 H 1.08004 * 119.99944 * 264.52855 * 17 16 15 19 19 C 1.37880 * 119.99799 * 84.53085 * 17 16 15 20 20 N 1.31511 * 120.00254 * 352.92492 * 19 17 16 21 21 Si 1.86799 * 119.99716 * 172.92492 * 19 17 16 22 22 H 1.48502 * 109.47420 * 89.99833 * 21 19 17 23 23 H 1.48504 * 109.46910 * 209.99883 * 21 19 17 24 24 H 1.48501 * 109.47505 * 329.99729 * 21 19 17 25 25 C 1.52992 * 117.50292 * 253.97617 * 16 15 14 26 26 C 1.52993 * 117.49779 * 185.35114 * 16 15 14 27 27 H 1.07999 * 119.99989 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00095 * 359.72637 * 1 2 3 29 29 H 1.07993 * 120.00299 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47685 * 301.17690 * 6 5 3 31 31 H 1.09002 * 109.47696 * 181.14331 * 6 5 3 32 32 H 1.09003 * 109.52338 * 182.48495 * 7 6 5 33 33 H 1.09001 * 109.52235 * 62.29549 * 7 6 5 34 34 H 1.08999 * 109.54493 * 297.11585 * 8 7 6 35 35 H 1.09003 * 109.61638 * 176.88701 * 8 7 6 36 36 H 0.97001 * 120.00204 * 335.00473 * 11 9 3 37 37 H 0.97001 * 119.99914 * 0.02562 * 14 12 11 38 38 H 1.08994 * 109.47558 * 301.14530 * 15 14 12 39 39 H 1.09002 * 109.46971 * 61.14807 * 15 14 12 40 40 H 0.97002 * 119.99812 * 185.03757 * 20 19 17 41 41 H 1.09005 * 117.49731 * 359.97438 * 25 16 15 42 42 H 1.08998 * 117.50065 * 145.01884 * 25 16 15 43 43 H 1.09002 * 117.49886 * 214.98398 * 26 16 15 44 44 H 1.08997 * 117.50444 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3552 2.1337 -0.0005 5 8 2.8862 1.3805 -1.1660 6 6 3.6287 2.5962 -1.2787 7 6 4.5717 2.7295 -0.0801 8 6 3.7510 2.6878 1.2125 9 6 2.9436 1.3866 1.2500 10 1 3.6247 0.5358 1.2719 11 7 2.0980 1.3693 2.4462 12 6 2.5986 0.9331 3.6190 13 8 3.7519 0.5535 3.6843 14 7 1.8205 0.9167 4.7194 15 6 2.3645 0.4421 5.9942 16 6 1.2748 0.4997 7.0667 17 6 -0.1030 0.0872 6.6162 18 1 -0.8144 0.8359 6.3002 19 6 -0.4552 -1.2458 6.6076 20 7 0.4498 -2.1667 6.8576 21 14 -2.2178 -1.7437 6.2407 22 1 -2.3807 -1.9472 4.7787 23 1 -2.5341 -3.0069 6.9545 24 1 -3.1400 -0.6729 6.6971 25 6 1.3729 1.6099 8.1147 26 6 1.6789 0.1621 8.5031 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0045 29 1 1.8500 -0.9352 0.0004 30 1 2.9410 3.4418 -1.2959 31 1 4.2112 2.5823 -2.1998 32 1 5.1070 3.6771 -0.1413 33 1 5.2856 1.9059 -0.0850 34 1 3.0713 3.5395 1.2406 35 1 4.4200 2.7265 2.0722 36 1 1.1778 1.6717 2.3941 37 1 0.9001 1.2185 4.6672 38 1 2.7097 -0.5856 5.8818 39 1 3.2002 1.0757 6.2910 40 1 0.2202 -3.1059 6.7800 41 1 2.2141 2.2992 8.0404 42 1 0.4409 2.0425 8.4785 43 1 0.9481 -0.3580 9.1225 44 1 2.7211 -0.1007 8.6843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563511457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:01 Heat of formation + Delta-G solvation = -37.927925 kcal Electronic energy + Delta-G solvation = -24322.295378 eV Core-core repulsion = 20854.757349 eV Total energy + Delta-G solvation = -3467.538028 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.17266 -38.79819 -36.74499 -34.95167 -34.13521 -33.17604 -32.10514 -32.00201 -29.20573 -26.08477 -25.25006 -25.02056 -23.19833 -21.16258 -20.54013 -20.33118 -19.93469 -19.39188 -17.68847 -16.85648 -16.42655 -15.94447 -15.44607 -14.94599 -14.74828 -14.67885 -14.28524 -14.06390 -13.85536 -13.76199 -13.27930 -12.92339 -12.63017 -12.61454 -12.06897 -11.86015 -11.60045 -11.54185 -11.17981 -11.03876 -11.03750 -10.94266 -10.70002 -10.54490 -10.23345 -9.88224 -9.70786 -9.48289 -9.38276 -8.94582 -8.74301 -8.51817 -8.28577 -7.81215 -6.10490 -4.19775 2.10527 3.18353 3.21948 3.31006 3.32409 3.81784 3.88881 4.31672 4.59425 4.73989 4.75500 4.77624 4.91397 5.00466 5.03432 5.19334 5.25060 5.33758 5.38959 5.48529 5.63607 5.72806 5.84221 5.86828 6.05901 6.11351 6.20801 6.33101 6.50589 6.53391 6.59371 6.59998 6.72846 6.78308 6.92158 7.07451 7.09922 7.35303 7.41872 7.47718 7.68238 7.77685 8.33002 8.78386 8.82998 9.32024 9.47382 10.97147 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.004364 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.104131 B = 6414.420376 C = 7590.737488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.064 0.936 5 O -0.370 6.370 6 C 0.058 3.942 7 C -0.153 4.153 8 C -0.135 4.135 9 C 0.144 3.856 10 H 0.096 0.904 11 N -0.744 5.744 12 C 0.700 3.300 13 O -0.607 6.607 14 N -0.712 5.712 15 C 0.184 3.816 16 C 0.029 3.971 17 C -0.504 4.504 18 H 0.060 0.940 19 C 0.078 3.922 20 N -0.869 5.869 21 Si 0.887 3.113 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.211 4.211 26 C -0.152 4.152 27 H 0.105 0.895 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.392 0.608 37 H 0.400 0.600 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.262 0.738 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 9.177 -13.738 16.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.057 3.943 4 H 0.082 0.918 5 O -0.288 6.288 6 C -0.018 4.018 7 C -0.192 4.192 8 C -0.174 4.174 9 C 0.037 3.963 10 H 0.114 0.886 11 N -0.401 5.401 12 C 0.400 3.600 13 O -0.487 6.487 14 N -0.365 5.365 15 C 0.060 3.940 16 C 0.028 3.972 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.127 4.127 20 N -0.504 5.504 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.248 4.248 26 C -0.190 4.190 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.114 0.886 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.226 0.774 37 H 0.235 0.765 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.302 8.446 -13.686 16.418 hybrid contribution -1.774 0.041 0.081 1.776 sum 1.528 8.488 -13.605 16.108 Atomic orbital electron populations 1.23869 0.95508 1.02303 0.99103 1.22585 0.95551 0.97333 1.00523 1.21350 0.91307 0.96346 0.85256 0.91805 1.88004 1.60094 1.39048 1.41633 1.22640 0.93703 0.86911 0.98573 1.22198 0.99031 1.03097 0.94840 1.22063 0.99370 0.97604 0.98317 1.21208 0.92517 0.99110 0.83434 0.88639 1.44937 1.15344 1.71858 1.07951 1.16000 0.85046 0.78614 0.80354 1.90850 1.17271 1.55537 1.85048 1.45107 1.15213 1.68065 1.08071 1.20695 0.93927 0.98009 0.81391 1.19036 0.94921 0.96490 0.86713 1.20263 0.95669 0.91947 1.46275 0.92230 1.24973 0.96822 0.96661 0.94239 1.69978 1.33295 1.00488 1.46632 0.86674 0.85317 0.78202 0.78309 1.20650 1.21169 1.19805 1.23082 1.00622 0.91798 1.09339 1.22493 0.99240 0.95877 1.01400 0.87688 0.88477 0.86605 0.93144 0.88648 0.90667 0.90662 0.91853 0.90385 0.77441 0.76462 0.91741 0.94912 0.92840 0.91625 0.90459 0.89946 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 14.32 29.02 0.42 -1.46 16 2 C -0.14 -1.75 8.82 -36.02 -0.32 -2.07 16 3 C 0.12 1.37 2.58 -27.83 -0.07 1.29 16 4 H 0.06 0.67 7.78 -51.93 -0.40 0.26 16 5 O -0.37 -4.45 10.39 -35.23 -0.37 -4.81 16 6 C 0.06 0.53 6.84 37.20 0.25 0.79 16 7 C -0.15 -1.48 6.14 -26.59 -0.16 -1.65 16 8 C -0.13 -1.61 5.61 -26.55 -0.15 -1.76 16 9 C 0.14 1.97 2.06 -67.79 -0.14 1.83 16 10 H 0.10 1.58 7.58 -51.93 -0.39 1.18 16 11 N -0.74 -11.23 4.73 -58.53 -0.28 -11.50 16 12 C 0.70 13.87 8.54 -86.92 -0.74 13.13 16 13 O -0.61 -14.23 16.01 5.29 0.08 -14.14 16 14 N -0.71 -14.53 5.34 -65.23 -0.35 -14.88 16 15 C 0.18 4.23 5.75 -4.04 -0.02 4.20 16 16 C 0.03 0.68 1.70 -155.66 -0.27 0.42 16 17 C -0.50 -12.59 7.43 -34.44 -0.26 -12.85 16 18 H 0.06 1.45 7.82 -52.48 -0.41 1.04 16 19 C 0.08 2.02 5.39 -17.82 -0.10 1.93 16 20 N -0.87 -23.83 12.97 55.43 0.72 -23.11 16 21 Si 0.89 20.04 29.55 -169.99 -5.02 15.02 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 25 C -0.21 -4.42 9.88 -26.74 -0.26 -4.68 16 26 C -0.15 -3.47 9.51 -26.74 -0.25 -3.72 16 27 H 0.10 1.10 8.06 -52.49 -0.42 0.68 16 28 H 0.10 0.92 7.83 -52.49 -0.41 0.51 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.39 5.02 8.62 -40.82 -0.35 4.67 16 37 H 0.40 7.67 7.47 -40.82 -0.30 7.37 16 38 H 0.06 1.69 8.14 -51.93 -0.42 1.27 16 39 H 0.03 0.73 7.95 -51.93 -0.41 0.32 16 40 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 41 H 0.07 1.26 8.08 -51.93 -0.42 0.84 16 42 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 43 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 44 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -29.86 363.87 -9.12 -38.98 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: -7.32 Total: 13.56 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -2.07 Total: -4.59 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.09 Total: -49.49 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.28 Total: -18.95 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.86 -9.12 -38.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563511457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.051 kcal (2) G-P(sol) polarization free energy of solvation -29.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds