Wall clock time and date at job start Tue Mar 31 2020 07:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50703 * 119.99706 * 2 1 4 4 H 1.09000 * 109.48145 * 359.97400 * 3 2 1 5 5 O 1.42905 * 109.47973 * 239.93827 * 3 2 1 6 6 C 1.42904 * 114.09747 * 178.86143 * 5 3 2 7 7 C 1.53090 * 109.41572 * 61.15743 * 6 5 3 8 8 C 1.53175 * 109.16309 * 302.39085 * 7 6 5 9 9 C 1.53097 * 109.48083 * 119.99693 * 3 2 1 10 10 H 1.09005 * 109.51907 * 57.68473 * 9 3 2 11 11 N 1.46499 * 109.52183 * 297.49569 * 9 3 2 12 12 C 1.34775 * 119.99746 * 154.99943 * 11 9 3 13 13 O 1.21589 * 120.00220 * 359.97438 * 12 11 9 14 14 N 1.34779 * 120.00035 * 180.02562 * 12 11 9 15 15 C 1.46498 * 120.00140 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47019 * 181.14118 * 15 14 12 17 17 C 1.50704 * 115.54684 * 39.68534 * 16 15 14 18 18 H 1.08004 * 119.99944 * 264.52855 * 17 16 15 19 19 C 1.37880 * 119.99799 * 84.53085 * 17 16 15 20 20 N 1.31511 * 120.00254 * 352.92492 * 19 17 16 21 21 Si 1.86799 * 119.99716 * 172.92492 * 19 17 16 22 22 H 1.48502 * 109.47420 * 89.99833 * 21 19 17 23 23 H 1.48504 * 109.46910 * 209.99883 * 21 19 17 24 24 H 1.48501 * 109.47505 * 329.99729 * 21 19 17 25 25 C 1.52992 * 117.50292 * 253.97617 * 16 15 14 26 26 C 1.52993 * 117.49779 * 185.35114 * 16 15 14 27 27 H 1.07999 * 119.99989 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.00095 * 359.72637 * 1 2 3 29 29 H 1.07993 * 120.00299 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.47685 * 301.17690 * 6 5 3 31 31 H 1.09002 * 109.47696 * 181.14331 * 6 5 3 32 32 H 1.09003 * 109.52338 * 182.48495 * 7 6 5 33 33 H 1.09001 * 109.52235 * 62.29549 * 7 6 5 34 34 H 1.08999 * 109.54493 * 297.11585 * 8 7 6 35 35 H 1.09003 * 109.61638 * 176.88701 * 8 7 6 36 36 H 0.97001 * 120.00204 * 335.00473 * 11 9 3 37 37 H 0.97001 * 119.99914 * 0.02562 * 14 12 11 38 38 H 1.08994 * 109.47558 * 301.14530 * 15 14 12 39 39 H 1.09002 * 109.46971 * 61.14807 * 15 14 12 40 40 H 0.97002 * 119.99812 * 185.03757 * 20 19 17 41 41 H 1.09005 * 117.49731 * 359.97438 * 25 16 15 42 42 H 1.08998 * 117.50065 * 145.01884 * 25 16 15 43 43 H 1.09002 * 117.49886 * 214.98398 * 26 16 15 44 44 H 1.08997 * 117.50444 * 0.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3552 2.1337 -0.0005 5 8 2.8862 1.3805 -1.1660 6 6 3.6287 2.5962 -1.2787 7 6 4.5717 2.7295 -0.0801 8 6 3.7510 2.6878 1.2125 9 6 2.9436 1.3866 1.2500 10 1 3.6247 0.5358 1.2719 11 7 2.0980 1.3693 2.4462 12 6 2.5986 0.9331 3.6190 13 8 3.7519 0.5535 3.6843 14 7 1.8205 0.9167 4.7194 15 6 2.3645 0.4421 5.9942 16 6 1.2748 0.4997 7.0667 17 6 -0.1030 0.0872 6.6162 18 1 -0.8144 0.8359 6.3002 19 6 -0.4552 -1.2458 6.6076 20 7 0.4498 -2.1667 6.8576 21 14 -2.2178 -1.7437 6.2407 22 1 -2.3807 -1.9472 4.7787 23 1 -2.5341 -3.0069 6.9545 24 1 -3.1400 -0.6729 6.6971 25 6 1.3729 1.6099 8.1147 26 6 1.6789 0.1621 8.5031 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5400 0.9353 0.0045 29 1 1.8500 -0.9352 0.0004 30 1 2.9410 3.4418 -1.2959 31 1 4.2112 2.5823 -2.1998 32 1 5.1070 3.6771 -0.1413 33 1 5.2856 1.9059 -0.0850 34 1 3.0713 3.5395 1.2406 35 1 4.4200 2.7265 2.0722 36 1 1.1778 1.6717 2.3941 37 1 0.9001 1.2185 4.6672 38 1 2.7097 -0.5856 5.8818 39 1 3.2002 1.0757 6.2910 40 1 0.2202 -3.1059 6.7800 41 1 2.2141 2.2992 8.0404 42 1 0.4409 2.0425 8.4785 43 1 0.9481 -0.3580 9.1225 44 1 2.7211 -0.1007 8.6843 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563511457.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:54:00 Heat of formation + Delta-G solvation = -57.149595 kcal Electronic energy + Delta-G solvation = -24323.128892 eV Core-core repulsion = 20854.757349 eV Total energy + Delta-G solvation = -3468.371543 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.37969 -40.12704 -38.50000 -36.14151 -35.06234 -34.88583 -33.98454 -33.17014 -30.26719 -27.86808 -27.00106 -25.98554 -24.22319 -22.92572 -21.78579 -21.50860 -21.25172 -20.91322 -19.20067 -18.24895 -17.65713 -17.22297 -16.68082 -16.60297 -16.30989 -15.84550 -15.78324 -15.23483 -15.07952 -14.97706 -14.67954 -14.38924 -14.12803 -13.81644 -13.53492 -13.45993 -12.90074 -12.82985 -12.80649 -12.48162 -12.32542 -12.14286 -12.00215 -11.87378 -11.63460 -11.48748 -11.20252 -10.80876 -10.75481 -10.44845 -10.42955 -10.15931 -9.98854 -9.49492 -8.07610 -6.21359 1.20334 1.43375 1.47595 1.55251 1.80780 2.28977 2.43953 2.93951 3.20360 3.40072 3.58161 3.67002 3.77310 3.91544 3.99887 4.05851 4.19179 4.28814 4.38978 4.53157 4.55227 4.64147 4.70231 4.75155 4.81348 4.86496 4.96731 4.99937 5.02158 5.07816 5.15879 5.26525 5.28564 5.50519 5.52782 5.63804 5.64564 5.69954 5.77133 5.81355 6.18469 6.22353 6.39804 6.86426 7.29217 7.48814 7.73711 8.99850 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017354 B = 0.004364 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.104131 B = 6414.420376 C = 7590.737488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.170 4.170 3 C 0.127 3.873 4 H 0.090 0.910 5 O -0.387 6.387 6 C 0.054 3.946 7 C -0.149 4.149 8 C -0.130 4.130 9 C 0.142 3.858 10 H 0.058 0.942 11 N -0.724 5.724 12 C 0.698 3.302 13 O -0.647 6.647 14 N -0.709 5.709 15 C 0.199 3.801 16 C 0.006 3.994 17 C -0.503 4.503 18 H 0.067 0.933 19 C 0.031 3.969 20 N -0.905 5.905 21 Si 0.948 3.052 22 H -0.276 1.276 23 H -0.295 1.295 24 H -0.263 1.263 25 C -0.179 4.179 26 C -0.163 4.163 27 H 0.107 0.893 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.408 0.592 37 H 0.408 0.592 38 H 0.022 0.978 39 H 0.036 0.964 40 H 0.257 0.743 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.585 11.637 -15.161 19.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.188 4.188 3 C 0.069 3.931 4 H 0.107 0.893 5 O -0.306 6.306 6 C -0.022 4.022 7 C -0.187 4.187 8 C -0.169 4.169 9 C 0.036 3.964 10 H 0.076 0.924 11 N -0.381 5.381 12 C 0.398 3.602 13 O -0.531 6.531 14 N -0.362 5.362 15 C 0.073 3.927 16 C 0.006 3.994 17 C -0.540 4.540 18 H 0.085 0.915 19 C -0.171 4.171 20 N -0.543 5.543 21 Si 0.774 3.226 22 H -0.201 1.201 23 H -0.221 1.221 24 H -0.187 1.187 25 C -0.216 4.216 26 C -0.201 4.201 27 H 0.125 0.875 28 H 0.138 0.862 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.244 0.756 37 H 0.244 0.756 38 H 0.040 0.960 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.082 0.918 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.632 10.949 -15.148 18.762 hybrid contribution -1.230 -0.710 0.498 1.505 sum 0.402 10.239 -14.649 17.877 Atomic orbital electron populations 1.24090 0.94972 1.03553 0.96785 1.22618 0.96281 0.97144 1.02737 1.21242 0.91062 0.96791 0.84012 0.89267 1.88000 1.60488 1.40813 1.41260 1.22878 0.93895 0.86512 0.98869 1.22190 0.98769 1.03811 0.93923 1.22008 0.99249 0.97090 0.98566 1.21321 0.92531 0.98817 0.83749 0.92366 1.44738 1.16156 1.70360 1.06807 1.16146 0.84428 0.78413 0.81233 1.90823 1.19164 1.57268 1.85797 1.44920 1.15534 1.68151 1.07627 1.20351 0.94096 0.95682 0.82548 1.19108 0.94495 0.98797 0.87037 1.20559 0.96346 0.91985 1.45151 0.91454 1.25675 1.00054 0.96882 0.94458 1.70123 1.35144 1.00468 1.48519 0.85713 0.81266 0.77523 0.78082 1.20143 1.22113 1.18706 1.23078 1.01690 0.90826 1.06050 1.22429 0.98981 0.97756 1.00940 0.87467 0.86179 0.88572 0.91012 0.86676 0.88214 0.92249 0.89752 0.93203 0.75647 0.75576 0.96003 0.94562 0.93379 0.89411 0.89558 0.91796 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 14.32 67.78 0.97 -2.15 16 2 C -0.17 -4.05 8.82 25.65 0.23 -3.83 16 3 C 0.13 2.79 2.58 29.88 0.08 2.87 16 4 H 0.09 1.53 7.78 -2.39 -0.02 1.51 16 5 O -0.39 -8.64 10.39 -148.98 -1.55 -10.19 16 6 C 0.05 0.83 6.84 72.01 0.49 1.33 16 7 C -0.15 -2.62 6.14 30.68 0.19 -2.43 16 8 C -0.13 -2.98 5.61 30.71 0.17 -2.81 16 9 C 0.14 3.85 2.06 45.08 0.09 3.94 16 10 H 0.06 2.03 7.58 -2.38 -0.02 2.01 16 11 N -0.72 -21.35 4.73 -457.37 -2.17 -23.52 16 12 C 0.70 27.98 8.54 179.05 1.53 29.51 16 13 O -0.65 -31.47 16.01 -4.00 -0.06 -31.54 16 14 N -0.71 -28.90 5.34 -478.53 -2.55 -31.45 16 15 C 0.20 9.26 5.75 86.38 0.50 9.76 16 16 C 0.01 0.30 1.70 -52.93 -0.09 0.21 16 17 C -0.50 -24.71 7.43 25.60 0.19 -24.52 16 18 H 0.07 3.15 7.82 -2.91 -0.02 3.12 16 19 C 0.03 1.58 5.39 84.66 0.46 2.03 16 20 N -0.91 -50.72 12.97 21.45 0.28 -50.44 16 21 Si 0.95 40.83 29.55 68.60 2.03 42.85 16 22 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 25 C -0.18 -7.15 9.88 30.59 0.30 -6.85 16 26 C -0.16 -7.42 9.51 30.59 0.29 -7.13 16 27 H 0.11 2.06 8.06 -2.91 -0.02 2.04 16 28 H 0.12 1.82 7.83 -2.91 -0.02 1.80 16 29 H 0.10 2.62 8.06 -2.91 -0.02 2.60 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.41 9.60 8.62 -92.71 -0.80 8.80 16 37 H 0.41 15.19 7.47 -92.71 -0.69 14.50 16 38 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.04 1.64 7.95 -2.39 -0.02 1.62 16 40 H 0.26 14.02 8.32 -92.71 -0.77 13.24 16 41 H 0.09 3.12 8.08 -2.38 -0.02 3.10 16 42 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 43 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -66.03 363.87 0.87 -65.16 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: -0.50 Total: 39.20 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: 5.39 Total: -0.08 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -4.44 Total: -105.41 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.61 Total: -41.72 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.85 kcal Total: -66.03 0.87 -65.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563511457.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.011 kcal (2) G-P(sol) polarization free energy of solvation -66.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds