Wall clock time and date at job start Tue Mar 31 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 C 1.50703 * 109.46983 * 240.00291 * 2 1 3 5 5 H 1.07999 * 119.99871 * 237.00239 * 4 2 1 6 6 C 1.37877 * 119.99883 * 57.00800 * 4 2 1 7 7 N 1.31519 * 120.00115 * 5.53578 * 6 4 2 8 8 Si 1.86805 * 119.99779 * 185.54373 * 6 4 2 9 9 H 1.48492 * 109.47412 * 84.99703 * 8 6 4 10 10 H 1.48505 * 109.46620 * 204.99587 * 8 6 4 11 11 H 1.48495 * 109.47045 * 324.99070 * 8 6 4 12 12 C 1.52993 * 109.47301 * 120.00103 * 2 1 3 13 13 N 1.46498 * 109.47524 * 300.00199 * 12 2 1 14 14 C 1.34775 * 120.00497 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99582 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00368 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.88733 * 56.18908 * 16 14 13 18 18 C 1.54862 * 111.04186 * 292.29534 * 16 14 13 19 19 C 1.51282 * 104.20884 * 217.09703 * 18 16 14 20 20 O 1.21277 * 124.94182 * 196.28038 * 19 18 16 21 21 N 1.34426 * 110.11639 * 16.26351 * 19 18 16 22 22 C 1.46491 * 124.34819 * 180.42522 * 21 19 18 23 23 C 1.53001 * 117.50385 * 8.72714 * 22 21 19 24 24 C 1.52999 * 117.50488 * 300.06447 * 22 21 19 25 25 C 1.46765 * 111.29614 * 0.40761 * 21 19 18 26 26 H 1.09004 * 109.47037 * 293.92814 * 1 2 3 27 27 H 1.08997 * 109.47499 * 53.93472 * 1 2 3 28 28 H 1.08997 * 109.46928 * 173.93079 * 1 2 3 29 29 H 1.09006 * 109.47069 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47303 * 300.00059 * 3 2 1 31 31 H 1.09002 * 109.47169 * 60.00774 * 3 2 1 32 32 H 0.97005 * 119.99797 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47464 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.47098 * 60.00234 * 12 2 1 35 35 H 0.97000 * 119.99693 * 359.97438 * 13 12 2 36 36 H 1.08999 * 110.47161 * 98.41674 * 18 16 14 37 37 H 1.09005 * 110.60007 * 335.84055 * 18 16 14 38 38 H 1.09007 * 115.55046 * 154.39168 * 22 21 19 39 39 H 1.09005 * 117.49259 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.50354 * 145.01412 * 23 22 21 41 41 H 1.08999 * 117.50169 * 214.97924 * 24 22 21 42 42 H 1.09005 * 117.49584 * 0.02562 * 24 22 21 43 43 H 1.08994 * 110.24576 * 101.98800 * 25 21 19 44 44 H 1.09007 * 110.23968 * 223.89511 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6926 -1.5594 -1.1322 6 6 1.6491 -0.2763 -2.4818 7 7 0.9349 0.8210 -2.6071 8 14 2.1440 -1.2469 -3.9992 9 1 1.1619 -2.3359 -4.2324 10 1 2.1706 -0.3436 -5.1776 11 1 3.4931 -1.8325 -3.7940 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5759 -1.4764 3.7806 16 6 1.3760 0.2197 4.8999 17 1 0.2884 0.2922 4.8905 18 6 2.0241 1.6195 5.0368 19 6 2.2338 1.7876 6.5256 20 8 2.4557 2.8426 7.0810 21 7 2.1381 0.5975 7.1433 22 6 2.2805 0.4023 8.5881 23 6 2.3515 1.6531 9.4664 24 6 3.6081 0.8119 9.2289 25 6 1.8721 -0.4810 6.1841 26 1 -0.3633 0.4168 0.9394 27 1 -0.3634 0.6050 -0.8307 28 1 -0.3633 -1.0219 -0.1087 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.6650 1.1262 -3.4874 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2491 35 1 0.9943 0.7581 2.3564 36 1 1.3525 2.3893 4.6568 37 1 2.9782 1.6534 4.5109 38 1 1.7728 -0.4714 8.9968 39 1 2.2927 2.6213 8.9690 40 1 1.8909 1.6022 10.4530 41 1 3.9736 0.2079 10.0594 42 1 4.3755 1.2270 8.5755 43 1 2.7863 -1.0385 5.9804 44 1 1.1022 -1.1486 6.5711 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567232568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:07 Heat of formation + Delta-G solvation = -44.167988 kcal Electronic energy + Delta-G solvation = -23990.655073 eV Core-core repulsion = 20522.846455 eV Total energy + Delta-G solvation = -3467.808618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05380 -39.30672 -36.82786 -36.69172 -35.89885 -33.42833 -31.56635 -30.61161 -27.92037 -25.87714 -25.78849 -25.15834 -23.30787 -22.91180 -22.44623 -19.97422 -19.36539 -18.84463 -17.71752 -16.95544 -16.31444 -15.85885 -15.38290 -15.13375 -14.94397 -14.70422 -14.46014 -14.00714 -13.76321 -13.45230 -13.31065 -12.95976 -12.92384 -12.60890 -12.24042 -11.77981 -11.71843 -11.58261 -11.44643 -11.24967 -11.17306 -10.90413 -10.73974 -10.68085 -10.44281 -10.26391 -9.91134 -9.69035 -9.57684 -9.31819 -8.85057 -8.72175 -8.55447 -8.38439 -6.07104 -4.16215 2.32523 2.58794 2.80322 3.26082 3.32935 3.35424 3.49061 3.62711 4.09041 4.19501 4.36792 4.53767 4.63545 4.70219 4.74397 4.87738 5.14795 5.18818 5.20298 5.38571 5.42315 5.46655 5.57111 5.74905 5.75810 6.02962 6.14138 6.24528 6.43857 6.45120 6.68694 6.75194 6.84715 6.86382 6.91602 6.95206 7.28875 7.50138 7.65318 7.89882 7.94123 7.96069 8.08064 8.32140 8.51391 8.84053 9.49672 10.94904 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039757 B = 0.002921 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.101195 B = 9583.440701 C = 9879.862165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.509 4.509 5 H 0.057 0.943 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.516 3.484 15 O -0.546 6.546 16 C -0.125 4.125 17 H 0.116 0.884 18 C -0.145 4.145 19 C 0.522 3.478 20 O -0.528 6.528 21 N -0.592 5.592 22 C 0.080 3.920 23 C -0.191 4.191 24 C -0.191 4.191 25 C 0.120 3.880 26 H 0.006 0.994 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.006 0.994 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.400 0.600 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.206 0.487 18.394 18.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.008 3.992 13 N -0.360 5.360 14 C 0.300 3.700 15 O -0.425 6.425 16 C -0.147 4.147 17 H 0.134 0.866 18 C -0.185 4.185 19 C 0.311 3.689 20 O -0.405 6.405 21 N -0.324 5.324 22 C -0.023 4.023 23 C -0.228 4.228 24 C -0.230 4.230 25 C -0.003 4.003 26 H 0.025 0.975 27 H 0.100 0.900 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.105 0.895 31 H 0.025 0.975 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.235 0.765 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -0.671 0.423 18.638 18.655 hybrid contribution -0.064 -0.281 -0.964 1.007 sum -0.736 0.141 17.673 17.689 Atomic orbital electron populations 1.21817 0.97711 1.00204 0.99010 1.18356 0.92773 0.92766 0.90552 1.21861 0.98638 0.98289 1.00100 1.20957 1.29480 1.14410 0.89924 0.92426 1.24874 0.94944 0.94746 0.98824 1.69822 1.37746 1.21356 1.23369 0.86597 0.79046 0.79919 0.82375 1.20612 1.21315 1.19966 1.21762 0.98252 0.95879 0.83259 1.46306 1.52194 1.31630 1.05873 1.19924 0.80927 0.84662 0.84467 1.90690 1.38503 1.26618 1.86674 1.22297 1.02713 0.95490 0.94200 0.86567 1.22395 1.04467 0.97091 0.94552 1.20842 0.75480 0.83026 0.89572 1.90607 1.49524 1.29147 1.71251 1.47686 1.70469 1.08569 1.05710 1.21521 1.01753 1.00441 0.78617 1.23766 1.00730 0.98057 1.00238 1.23365 0.92140 1.04141 1.03323 1.21994 1.02967 0.89059 0.86238 0.97456 0.89968 0.95143 0.95418 0.89542 0.97534 0.92955 0.92551 0.92487 0.76483 0.86916 0.87020 0.85248 0.85110 0.88530 0.88176 0.88678 0.88674 0.89702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 8.03 37.16 0.30 -2.47 16 2 C 0.06 1.23 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.81 8.11 37.16 0.30 -2.51 16 4 C -0.51 -12.90 8.01 -34.44 -0.28 -13.18 16 5 H 0.06 1.48 7.75 -52.49 -0.41 1.07 16 6 C 0.07 1.74 5.13 -17.82 -0.09 1.65 16 7 N -0.88 -23.03 9.45 55.43 0.52 -22.51 16 8 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 12 C 0.13 2.57 4.50 -4.05 -0.02 2.55 16 13 N -0.71 -11.11 4.90 -60.30 -0.30 -11.40 16 14 C 0.52 7.56 7.07 -10.99 -0.08 7.49 16 15 O -0.55 -9.94 15.50 5.56 0.09 -9.85 16 16 C -0.12 -1.31 3.55 -90.02 -0.32 -1.63 16 17 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 18 C -0.14 -1.54 6.41 -26.62 -0.17 -1.71 16 19 C 0.52 6.56 7.88 -10.86 -0.09 6.47 16 20 O -0.53 -8.08 14.69 5.56 0.08 -8.00 16 21 N -0.59 -6.43 3.27 -164.85 -0.54 -6.97 16 22 C 0.08 0.76 6.88 -67.94 -0.47 0.29 16 23 C -0.19 -1.86 9.77 -26.69 -0.26 -2.12 16 24 C -0.19 -1.79 10.34 -26.69 -0.28 -2.06 16 25 C 0.12 1.22 6.70 -3.13 -0.02 1.20 16 26 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 27 H 0.08 1.95 6.25 -51.93 -0.32 1.63 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 2.08 6.10 -51.93 -0.32 1.77 16 31 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 32 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.40 5.59 6.16 -40.82 -0.25 5.34 16 36 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.26 7.90 -51.93 -0.41 0.85 16 38 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.13 1.64 5.30 -51.93 -0.28 1.37 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.10 1.13 6.96 -51.93 -0.36 0.76 16 44 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 349.45 15.07 5.27 5.27 Total: -1.00 -29.15 349.45 -8.28 -37.43 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -6.84 Total: 5.62 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -1.54 Total: -4.88 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: -0.31 Total: -40.88 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.17 Total: -17.85 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.15 -8.28 -37.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567232568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.735 kcal (2) G-P(sol) polarization free energy of solvation -29.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds