Wall clock time and date at job start Tue Mar 31 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 C 1.50703 * 109.46983 * 240.00291 * 2 1 3 5 5 H 1.07999 * 119.99871 * 237.00239 * 4 2 1 6 6 C 1.37877 * 119.99883 * 57.00800 * 4 2 1 7 7 N 1.31519 * 120.00115 * 5.53578 * 6 4 2 8 8 Si 1.86805 * 119.99779 * 185.54373 * 6 4 2 9 9 H 1.48492 * 109.47412 * 84.99703 * 8 6 4 10 10 H 1.48505 * 109.46620 * 204.99587 * 8 6 4 11 11 H 1.48495 * 109.47045 * 324.99070 * 8 6 4 12 12 C 1.52993 * 109.47301 * 120.00103 * 2 1 3 13 13 N 1.46498 * 109.47524 * 300.00199 * 12 2 1 14 14 C 1.34775 * 120.00497 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99582 * 0.02562 * 14 13 12 16 16 C 1.50694 * 120.00368 * 179.97438 * 14 13 12 17 17 H 1.09004 * 110.88733 * 56.18908 * 16 14 13 18 18 C 1.54862 * 111.04186 * 292.29534 * 16 14 13 19 19 C 1.51282 * 104.20884 * 217.09703 * 18 16 14 20 20 O 1.21277 * 124.94182 * 196.28038 * 19 18 16 21 21 N 1.34426 * 110.11639 * 16.26351 * 19 18 16 22 22 C 1.46491 * 124.34819 * 180.42522 * 21 19 18 23 23 C 1.53001 * 117.50385 * 8.72714 * 22 21 19 24 24 C 1.52999 * 117.50488 * 300.06447 * 22 21 19 25 25 C 1.46765 * 111.29614 * 0.40761 * 21 19 18 26 26 H 1.09004 * 109.47037 * 293.92814 * 1 2 3 27 27 H 1.08997 * 109.47499 * 53.93472 * 1 2 3 28 28 H 1.08997 * 109.46928 * 173.93079 * 1 2 3 29 29 H 1.09006 * 109.47069 * 179.97438 * 3 2 1 30 30 H 1.08995 * 109.47303 * 300.00059 * 3 2 1 31 31 H 1.09002 * 109.47169 * 60.00774 * 3 2 1 32 32 H 0.97005 * 119.99797 * 180.02562 * 7 6 4 33 33 H 1.09003 * 109.47464 * 179.97438 * 12 2 1 34 34 H 1.08998 * 109.47098 * 60.00234 * 12 2 1 35 35 H 0.97000 * 119.99693 * 359.97438 * 13 12 2 36 36 H 1.08999 * 110.47161 * 98.41674 * 18 16 14 37 37 H 1.09005 * 110.60007 * 335.84055 * 18 16 14 38 38 H 1.09007 * 115.55046 * 154.39168 * 22 21 19 39 39 H 1.09005 * 117.49259 * 359.97438 * 23 22 21 40 40 H 1.08997 * 117.50354 * 145.01412 * 23 22 21 41 41 H 1.08999 * 117.50169 * 214.97924 * 24 22 21 42 42 H 1.09005 * 117.49584 * 0.02562 * 24 22 21 43 43 H 1.08994 * 110.24576 * 101.98800 * 25 21 19 44 44 H 1.09007 * 110.23968 * 223.89511 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6926 -1.5594 -1.1322 6 6 1.6491 -0.2763 -2.4818 7 7 0.9349 0.8210 -2.6071 8 14 2.1440 -1.2469 -3.9992 9 1 1.1619 -2.3359 -4.2324 10 1 2.1706 -0.3436 -5.1776 11 1 3.4931 -1.8325 -3.7940 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0308 2.4454 14 6 1.8778 -0.4909 3.6695 15 8 2.5759 -1.4764 3.7806 16 6 1.3760 0.2197 4.8999 17 1 0.2884 0.2922 4.8905 18 6 2.0241 1.6195 5.0368 19 6 2.2338 1.7876 6.5256 20 8 2.4557 2.8426 7.0810 21 7 2.1381 0.5975 7.1433 22 6 2.2805 0.4023 8.5881 23 6 2.3515 1.6531 9.4664 24 6 3.6081 0.8119 9.2289 25 6 1.8721 -0.4810 6.1841 26 1 -0.3633 0.4168 0.9394 27 1 -0.3634 0.6050 -0.8307 28 1 -0.3633 -1.0219 -0.1087 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8901 32 1 0.6650 1.1262 -3.4874 33 1 3.1301 -0.7216 1.2489 34 1 1.6768 -1.7489 1.2491 35 1 0.9943 0.7581 2.3564 36 1 1.3525 2.3893 4.6568 37 1 2.9782 1.6534 4.5109 38 1 1.7728 -0.4714 8.9968 39 1 2.2927 2.6213 8.9690 40 1 1.8909 1.6022 10.4530 41 1 3.9736 0.2079 10.0594 42 1 4.3755 1.2270 8.5755 43 1 2.7863 -1.0385 5.9804 44 1 1.1022 -1.1486 6.5711 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567232568.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:07 Heat of formation + Delta-G solvation = -61.666190 kcal Electronic energy + Delta-G solvation = -23991.413852 eV Core-core repulsion = 20522.846455 eV Total energy + Delta-G solvation = -3468.567397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99979 -40.52276 -38.21807 -37.68230 -36.95077 -35.00396 -32.95576 -31.90927 -28.82563 -27.52605 -27.48491 -26.89217 -24.29385 -23.79843 -23.24195 -21.17518 -20.57555 -20.22916 -18.78953 -17.87832 -17.71440 -17.22685 -16.70037 -16.50429 -16.22670 -15.88589 -15.56445 -14.99564 -14.84309 -14.76057 -14.61343 -14.24496 -14.04378 -13.97864 -13.67763 -13.20072 -13.05335 -12.69422 -12.60864 -12.57292 -12.52081 -12.40648 -12.20573 -12.12975 -11.94949 -11.44502 -11.39402 -11.25808 -10.96034 -10.68623 -10.54871 -10.37084 -9.91625 -9.56479 -8.01667 -6.15751 1.38526 1.43342 1.46578 1.53265 1.61376 1.77693 2.29840 2.49831 2.87753 3.19420 3.22750 3.33364 3.74049 3.79574 3.90651 4.00116 4.12512 4.19315 4.45097 4.47477 4.56000 4.58692 4.71949 4.75853 4.76522 4.77868 4.93177 5.01182 5.04852 5.09662 5.13783 5.23349 5.26061 5.39611 5.62088 5.64566 5.70044 5.71556 5.99860 6.18376 6.25053 6.45427 6.66569 6.89134 7.04165 7.30165 7.51837 8.97467 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039757 B = 0.002921 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.101195 B = 9583.440701 C = 9879.862165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.051 3.949 3 C -0.122 4.122 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.941 3.059 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.148 3.852 13 N -0.705 5.705 14 C 0.520 3.480 15 O -0.582 6.582 16 C -0.109 4.109 17 H 0.152 0.848 18 C -0.141 4.141 19 C 0.514 3.486 20 O -0.562 6.562 21 N -0.590 5.590 22 C 0.075 3.925 23 C -0.194 4.194 24 C -0.193 4.193 25 C 0.122 3.878 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.259 0.741 33 H 0.038 0.962 34 H 0.043 0.957 35 H 0.411 0.589 36 H 0.133 0.867 37 H 0.103 0.897 38 H 0.162 0.838 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.382 0.103 19.973 20.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.051 3.949 3 C -0.180 4.180 4 C -0.568 4.568 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.768 3.232 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.024 3.976 13 N -0.356 5.356 14 C 0.306 3.694 15 O -0.462 6.462 16 C -0.131 4.131 17 H 0.169 0.831 18 C -0.181 4.181 19 C 0.303 3.697 20 O -0.442 6.442 21 N -0.320 5.320 22 C -0.028 4.028 23 C -0.232 4.232 24 C -0.231 4.231 25 C -0.001 4.001 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.038 0.962 29 H 0.035 0.965 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.248 0.752 36 H 0.151 0.849 37 H 0.121 0.879 38 H 0.179 0.821 39 H 0.119 0.881 40 H 0.139 0.861 41 H 0.143 0.857 42 H 0.088 0.912 43 H 0.095 0.905 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.859 0.035 20.230 20.315 hybrid contribution 0.354 -0.176 -1.416 1.470 sum -1.505 -0.141 18.814 18.874 Atomic orbital electron populations 1.21659 0.96959 0.99267 0.99890 1.18347 0.93300 0.92916 0.90369 1.21703 0.97868 0.97948 1.00460 1.21289 1.29429 1.14398 0.91712 0.93731 1.25423 0.95255 0.95518 1.00842 1.69930 1.38225 1.21948 1.23582 0.85839 0.78528 0.78871 0.79952 1.20406 1.21112 1.20175 1.21258 0.97037 0.95245 0.84091 1.46102 1.52502 1.31829 1.05178 1.20533 0.79763 0.84063 0.85007 1.90687 1.39938 1.28429 1.87189 1.22241 1.04464 0.94539 0.91827 0.83067 1.22402 1.04621 0.97752 0.93317 1.21159 0.75165 0.83037 0.90343 1.90606 1.51165 1.30454 1.72015 1.47808 1.69498 1.08185 1.06557 1.21933 1.01824 1.01239 0.77817 1.23697 1.01363 0.96842 1.01251 1.23382 0.91585 1.04393 1.03744 1.22027 1.03054 0.88913 0.86072 0.93858 0.92411 0.96217 0.96469 0.92145 0.94109 0.93121 0.94334 0.93878 0.75161 0.84871 0.87875 0.82068 0.88066 0.86128 0.85722 0.91169 0.90493 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 8.03 71.98 0.58 -4.39 16 2 C 0.05 2.23 0.50 -52.93 -0.03 2.20 16 3 C -0.12 -5.13 8.11 71.98 0.58 -4.55 16 4 C -0.53 -27.10 8.01 25.60 0.20 -26.89 16 5 H 0.04 2.33 7.75 -2.91 -0.02 2.31 16 6 C 0.03 1.53 5.13 84.65 0.43 1.96 16 7 N -0.90 -46.95 9.45 21.45 0.20 -46.74 16 8 Si 0.94 41.83 29.54 68.60 2.03 43.86 16 9 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 10 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 12 C 0.15 5.72 4.50 86.38 0.39 6.11 16 13 N -0.71 -20.57 4.90 -463.08 -2.27 -22.84 16 14 C 0.52 14.15 7.07 87.66 0.62 14.77 16 15 O -0.58 -20.57 15.50 -3.03 -0.05 -20.62 16 16 C -0.11 -1.94 3.55 -10.41 -0.04 -1.98 16 17 H 0.15 1.75 8.14 -2.38 -0.02 1.73 16 18 C -0.14 -2.67 6.41 30.67 0.20 -2.47 16 19 C 0.51 12.21 7.88 87.90 0.69 12.90 16 20 O -0.56 -17.12 14.69 -3.02 -0.04 -17.17 16 21 N -0.59 -11.55 3.27 -794.05 -2.60 -14.15 16 22 C 0.07 1.23 6.88 44.99 0.31 1.54 16 23 C -0.19 -3.51 9.77 30.62 0.30 -3.21 16 24 C -0.19 -3.34 10.34 30.62 0.32 -3.02 16 25 C 0.12 2.13 6.70 86.83 0.58 2.71 16 26 H 0.04 1.43 6.71 -2.39 -0.02 1.42 16 27 H 0.06 2.70 6.25 -2.39 -0.01 2.68 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 30 H 0.06 2.89 6.10 -2.39 -0.01 2.87 16 31 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 32 H 0.26 13.13 8.31 -92.70 -0.77 12.36 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.41 10.13 6.16 -92.71 -0.57 9.55 16 36 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 37 H 0.10 2.18 7.90 -2.38 -0.02 2.16 16 38 H 0.16 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.10 2.54 5.30 -2.38 -0.01 2.52 16 40 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 1.69 6.96 -2.39 -0.02 1.68 16 44 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -64.72 349.45 2.85 -61.87 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.43 Total: 20.11 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 5.14 Total: -4.32 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -4.67 Total: -83.73 kcal Atomic # 8 Polarization: -37.69 SS G_CDS: -0.09 Total: -37.78 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -64.72 2.85 -61.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567232568.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.204 kcal (2) G-P(sol) polarization free energy of solvation -64.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds