Wall clock time and date at job start Tue Mar 31 2020 06:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33693 * 126.27492 * 2 1 4 4 C 1.30614 * 108.99837 * 180.12074 * 3 2 1 5 5 C 1.50695 * 125.42450 * 179.86715 * 4 3 2 6 6 C 1.53005 * 109.47207 * 59.69166 * 5 4 3 7 7 C 1.52995 * 109.47339 * 299.68963 * 5 4 3 8 8 O 1.33670 * 109.15134 * 359.59619 * 4 3 2 9 9 C 1.35335 * 107.68617 * 0.24741 * 8 4 3 10 10 C 1.46727 * 126.64670 * 179.97438 * 9 8 4 11 11 O 1.21683 * 120.00089 * 173.80819 * 10 9 8 12 12 N 1.34780 * 119.99457 * 353.81752 * 10 9 8 13 13 C 1.46497 * 120.00261 * 4.34334 * 12 10 9 14 14 C 1.50696 * 109.47414 * 83.38758 * 13 12 10 15 15 H 1.08008 * 119.99658 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00164 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00187 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99963 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47296 * 89.99698 * 18 16 14 20 20 H 1.48500 * 109.47147 * 209.99374 * 18 16 14 21 21 H 1.48500 * 109.47274 * 329.99762 * 18 16 14 22 22 C 1.46496 * 119.99431 * 184.34347 * 12 10 9 23 23 C 1.53005 * 109.47057 * 124.64017 * 22 12 10 24 24 C 1.53008 * 109.47071 * 244.63724 * 22 12 10 25 25 H 1.09004 * 109.47238 * 270.32699 * 1 2 3 26 26 H 1.08994 * 109.47355 * 30.32308 * 1 2 3 27 27 H 1.08997 * 109.47142 * 150.32702 * 1 2 3 28 28 H 1.09000 * 109.47201 * 179.68840 * 5 4 3 29 29 H 1.08997 * 109.47268 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47599 * 59.99650 * 6 5 4 31 31 H 1.09000 * 109.46774 * 299.99936 * 6 5 4 32 32 H 1.08997 * 109.47605 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47011 * 299.99778 * 7 5 4 34 34 H 1.09000 * 109.47074 * 59.99799 * 7 5 4 35 35 H 1.08998 * 109.46881 * 203.39123 * 13 12 10 36 36 H 1.09004 * 109.46973 * 323.38625 * 13 12 10 37 37 H 0.97002 * 120.00545 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.47649 * 4.63570 * 22 12 10 39 39 H 1.08995 * 109.47256 * 59.99313 * 23 22 12 40 40 H 1.09001 * 109.46710 * 179.97438 * 23 22 12 41 41 H 1.09000 * 109.46798 * 299.99431 * 23 22 12 42 42 H 1.08998 * 109.47128 * 60.00294 * 24 22 12 43 43 H 1.08995 * 109.47177 * 180.02562 * 24 22 12 44 44 H 1.08998 * 109.46491 * 299.99940 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0026 5 6 4.7440 1.6031 -0.0063 6 6 4.7115 2.4925 1.2383 7 6 4.7138 2.4793 -1.2602 8 8 3.5890 -0.6460 0.0046 9 6 2.3137 -1.0992 0.0063 10 6 1.8827 -2.5017 0.0130 11 8 0.7024 -2.7749 0.1276 12 7 2.7940 -3.4873 -0.1075 13 6 4.2221 -3.1633 -0.1494 14 6 4.7426 -3.0037 1.2557 15 1 4.0762 -3.1313 2.0961 16 6 6.0695 -2.6959 1.4686 17 7 6.5238 -2.5570 2.6949 18 14 7.2221 -2.4760 0.0151 19 1 7.2173 -1.0531 -0.4096 20 1 8.5983 -2.8697 0.4107 21 1 6.7672 -3.3303 -1.1111 22 6 2.3565 -4.8825 -0.1965 23 6 2.9299 -5.5169 -1.4653 24 6 2.8544 -5.6524 1.0285 25 1 -0.3634 0.0059 1.0277 26 1 -0.3634 0.8870 -0.5188 27 1 -0.3633 -0.8929 -0.5087 28 1 5.6557 1.0058 -0.0024 29 1 5.5783 3.1533 1.2353 30 1 4.7330 1.8683 2.1316 31 1 3.7997 3.0898 1.2343 32 1 5.5805 3.1401 -1.2627 33 1 4.7369 1.8456 -2.1469 34 1 3.8020 3.0766 -1.2642 35 1 4.7627 -3.9679 -0.6479 36 1 4.3677 -2.2331 -0.6987 37 1 7.4573 -2.3401 2.8448 38 1 1.2677 -4.9204 -0.2315 39 1 4.0186 -5.4790 -1.4303 40 1 2.6046 -6.5552 -1.5312 41 1 2.5751 -4.9685 -2.3379 42 1 2.4459 -5.2005 1.9323 43 1 2.5292 -6.6906 0.9620 44 1 3.9432 -5.6145 1.0633 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567923205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:11 Heat of formation + Delta-G solvation = -24.491857 kcal Electronic energy + Delta-G solvation = -25540.303215 eV Core-core repulsion = 22073.347818 eV Total energy + Delta-G solvation = -3466.955397 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.89642 -39.24557 -36.18122 -35.60081 -34.52636 -32.93876 -31.68147 -30.37987 -28.04204 -27.18720 -27.10212 -26.76683 -24.01269 -22.65974 -22.04623 -20.43303 -20.05734 -18.73017 -17.09430 -16.83517 -16.25796 -16.01885 -15.74152 -14.51168 -14.32884 -14.27204 -13.93802 -13.59297 -13.37970 -13.10465 -12.84254 -12.76828 -12.61492 -12.52029 -12.13709 -12.06612 -11.87799 -11.73356 -11.63580 -11.57073 -11.18649 -11.10950 -10.97479 -10.88767 -10.67547 -10.44172 -10.32422 -10.21492 -10.12600 -9.59645 -9.47050 -8.70050 -8.35568 -7.80770 -6.19586 -4.18627 1.41595 2.86148 2.96564 3.13568 3.22318 3.23695 3.66300 3.71490 4.25719 4.26111 4.95273 5.05392 5.10866 5.14497 5.22777 5.28427 5.44866 5.52854 5.67282 5.68871 5.76597 5.81456 5.90803 5.94683 5.98830 6.01381 6.04873 6.08616 6.19648 6.22660 6.27233 6.30895 6.33785 6.39703 6.51076 6.58832 6.72744 6.85064 6.92915 7.26010 7.44307 7.93297 8.13221 8.37141 8.66112 8.85869 9.39609 10.93233 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.008649 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.365841 B = 3236.576369 C = 4938.945244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.054 3.946 3 N -0.491 5.491 4 C 0.207 3.793 5 C -0.002 4.002 6 C -0.141 4.141 7 C -0.140 4.140 8 O -0.140 6.140 9 C -0.090 4.090 10 C 0.607 3.393 11 O -0.547 6.547 12 N -0.575 5.575 13 C 0.202 3.798 14 C -0.524 4.524 15 H 0.077 0.923 16 C 0.080 3.920 17 N -0.891 5.891 18 Si 0.864 3.136 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.266 1.266 22 C 0.137 3.863 23 C -0.160 4.160 24 C -0.154 4.154 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.265 0.735 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 4.221 -7.851 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.071 4.071 3 N -0.222 5.222 4 C 0.002 3.998 5 C -0.022 4.022 6 C -0.198 4.198 7 C -0.198 4.198 8 O -0.024 6.024 9 C -0.146 4.146 10 C 0.395 3.605 11 O -0.429 6.429 12 N -0.304 5.304 13 C 0.081 3.919 14 C -0.562 4.562 15 H 0.095 0.905 16 C -0.123 4.123 17 N -0.529 5.529 18 Si 0.690 3.310 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.191 1.191 22 C 0.034 3.966 23 C -0.218 4.218 24 C -0.212 4.212 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.118 0.882 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.442 4.657 -7.686 10.024 hybrid contribution 1.260 -0.586 -0.467 1.466 sum -3.182 4.071 -8.152 9.652 Atomic orbital electron populations 1.20210 0.85995 1.03306 1.03120 1.21888 0.97872 0.86773 1.00562 1.70152 1.00333 1.31119 1.20548 1.26375 0.95128 0.80716 0.97620 1.19680 0.91302 0.93252 0.97954 1.21798 1.02675 0.99167 0.96188 1.21814 1.02963 0.99306 0.95702 1.84992 1.28675 1.21791 1.66962 1.22826 0.81558 0.96057 1.14139 1.16413 0.85156 0.81884 0.77061 1.90740 1.16499 1.82275 1.53421 1.47942 1.08321 1.05315 1.68798 1.20040 0.76341 0.96435 0.99081 1.21238 0.95474 1.48534 0.90956 0.90522 1.24771 0.97691 0.94599 0.95275 1.69885 1.15490 1.47996 1.19572 0.87049 0.80987 0.79301 0.83617 1.19766 1.20937 1.19058 1.20981 0.99977 0.80394 0.95285 1.22159 1.02204 1.00275 0.97203 1.22082 1.03535 0.98145 0.97435 0.90631 0.91268 0.89329 0.88216 0.91317 0.91728 0.91452 0.91238 0.92446 0.91300 0.94247 0.94449 0.92506 0.89009 0.91737 0.91719 0.92806 0.92460 0.92875 0.90632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.10 9.81 36.01 0.35 -0.75 16 2 C 0.05 1.05 7.16 -82.46 -0.59 0.46 16 3 N -0.49 -9.34 11.26 -7.07 -0.08 -9.42 16 4 C 0.21 3.97 6.82 -12.80 -0.09 3.88 16 5 C 0.00 -0.04 3.39 -91.77 -0.31 -0.35 16 6 C -0.14 -1.93 9.18 37.16 0.34 -1.59 16 7 C -0.14 -1.72 9.18 37.16 0.34 -1.38 16 8 O -0.14 -3.08 6.86 4.44 0.03 -3.05 16 9 C -0.09 -1.93 6.77 -36.84 -0.25 -2.18 16 10 C 0.61 13.24 7.58 -12.83 -0.10 13.15 16 11 O -0.55 -12.02 14.22 5.20 0.07 -11.95 16 12 N -0.57 -12.10 2.38 -168.99 -0.40 -12.51 16 13 C 0.20 4.57 3.18 -5.20 -0.02 4.56 16 14 C -0.52 -13.80 8.10 -34.44 -0.28 -14.08 16 15 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 16 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 17 N -0.89 -25.69 13.96 55.43 0.77 -24.92 16 18 Si 0.86 19.78 27.47 -169.99 -4.67 15.12 16 19 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -5.81 6.54 56.52 0.37 -5.44 16 22 C 0.14 2.44 3.24 -67.93 -0.22 2.22 16 23 C -0.16 -2.39 9.10 37.16 0.34 -2.05 16 24 C -0.15 -2.72 8.92 37.16 0.33 -2.39 16 25 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 26 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.44 6.61 -51.93 -0.34 1.10 16 28 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.04 0.87 5.26 -51.93 -0.27 0.60 16 36 H 0.04 0.88 4.82 -51.93 -0.25 0.63 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.09 1.63 6.93 -51.93 -0.36 1.27 16 39 H 0.06 1.01 6.50 -51.93 -0.34 0.67 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.48 7.29 -51.93 -0.38 1.10 16 LS Contribution 354.40 15.07 5.34 5.34 Total: -1.00 -30.17 354.40 -6.20 -36.37 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.03 Total: 3.48 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.24 Total: 1.54 kcal Atomic # 7 Polarization: -47.14 SS G_CDS: 0.29 Total: -46.84 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.10 Total: -15.00 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.17 -6.20 -36.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567923205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.876 kcal (2) G-P(sol) polarization free energy of solvation -30.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds