Wall clock time and date at job start Tue Mar 31 2020 06:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33693 * 126.27492 * 2 1 4 4 C 1.30614 * 108.99837 * 180.12074 * 3 2 1 5 5 C 1.50695 * 125.42450 * 179.86715 * 4 3 2 6 6 C 1.53005 * 109.47207 * 59.69166 * 5 4 3 7 7 C 1.52995 * 109.47339 * 299.68963 * 5 4 3 8 8 O 1.33670 * 109.15134 * 359.59619 * 4 3 2 9 9 C 1.35335 * 107.68617 * 0.24741 * 8 4 3 10 10 C 1.46727 * 126.64670 * 179.97438 * 9 8 4 11 11 O 1.21683 * 120.00089 * 173.80819 * 10 9 8 12 12 N 1.34780 * 119.99457 * 353.81752 * 10 9 8 13 13 C 1.46497 * 120.00261 * 4.34334 * 12 10 9 14 14 C 1.50696 * 109.47414 * 83.38758 * 13 12 10 15 15 H 1.08008 * 119.99658 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00164 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00187 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99963 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47296 * 89.99698 * 18 16 14 20 20 H 1.48500 * 109.47147 * 209.99374 * 18 16 14 21 21 H 1.48500 * 109.47274 * 329.99762 * 18 16 14 22 22 C 1.46496 * 119.99431 * 184.34347 * 12 10 9 23 23 C 1.53005 * 109.47057 * 124.64017 * 22 12 10 24 24 C 1.53008 * 109.47071 * 244.63724 * 22 12 10 25 25 H 1.09004 * 109.47238 * 270.32699 * 1 2 3 26 26 H 1.08994 * 109.47355 * 30.32308 * 1 2 3 27 27 H 1.08997 * 109.47142 * 150.32702 * 1 2 3 28 28 H 1.09000 * 109.47201 * 179.68840 * 5 4 3 29 29 H 1.08997 * 109.47268 * 180.02562 * 6 5 4 30 30 H 1.08998 * 109.47599 * 59.99650 * 6 5 4 31 31 H 1.09000 * 109.46774 * 299.99936 * 6 5 4 32 32 H 1.08997 * 109.47605 * 179.97438 * 7 5 4 33 33 H 1.09004 * 109.47011 * 299.99778 * 7 5 4 34 34 H 1.09000 * 109.47074 * 59.99799 * 7 5 4 35 35 H 1.08998 * 109.46881 * 203.39123 * 13 12 10 36 36 H 1.09004 * 109.46973 * 323.38625 * 13 12 10 37 37 H 0.97002 * 120.00545 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.47649 * 4.63570 * 22 12 10 39 39 H 1.08995 * 109.47256 * 59.99313 * 23 22 12 40 40 H 1.09001 * 109.46710 * 179.97438 * 23 22 12 41 41 H 1.09000 * 109.46798 * 299.99431 * 23 22 12 42 42 H 1.08998 * 109.47128 * 60.00294 * 24 22 12 43 43 H 1.08995 * 109.47177 * 180.02562 * 24 22 12 44 44 H 1.08998 * 109.46491 * 299.99940 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 -0.0026 5 6 4.7440 1.6031 -0.0063 6 6 4.7115 2.4925 1.2383 7 6 4.7138 2.4793 -1.2602 8 8 3.5890 -0.6460 0.0046 9 6 2.3137 -1.0992 0.0063 10 6 1.8827 -2.5017 0.0130 11 8 0.7024 -2.7749 0.1276 12 7 2.7940 -3.4873 -0.1075 13 6 4.2221 -3.1633 -0.1494 14 6 4.7426 -3.0037 1.2557 15 1 4.0762 -3.1313 2.0961 16 6 6.0695 -2.6959 1.4686 17 7 6.5238 -2.5570 2.6949 18 14 7.2221 -2.4760 0.0151 19 1 7.2173 -1.0531 -0.4096 20 1 8.5983 -2.8697 0.4107 21 1 6.7672 -3.3303 -1.1111 22 6 2.3565 -4.8825 -0.1965 23 6 2.9299 -5.5169 -1.4653 24 6 2.8544 -5.6524 1.0285 25 1 -0.3634 0.0059 1.0277 26 1 -0.3634 0.8870 -0.5188 27 1 -0.3633 -0.8929 -0.5087 28 1 5.6557 1.0058 -0.0024 29 1 5.5783 3.1533 1.2353 30 1 4.7330 1.8683 2.1316 31 1 3.7997 3.0898 1.2343 32 1 5.5805 3.1401 -1.2627 33 1 4.7369 1.8456 -2.1469 34 1 3.8020 3.0766 -1.2642 35 1 4.7627 -3.9679 -0.6479 36 1 4.3677 -2.2331 -0.6987 37 1 7.4573 -2.3401 2.8448 38 1 1.2677 -4.9204 -0.2315 39 1 4.0186 -5.4790 -1.4303 40 1 2.6046 -6.5552 -1.5312 41 1 2.5751 -4.9685 -2.3379 42 1 2.4459 -5.2005 1.9323 43 1 2.5292 -6.6906 0.9620 44 1 3.9432 -5.6145 1.0633 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567923205.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:10 Heat of formation + Delta-G solvation = -44.283200 kcal Electronic energy + Delta-G solvation = -25541.161432 eV Core-core repulsion = 22073.347818 eV Total energy + Delta-G solvation = -3467.813614 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -44.44161 -40.88243 -37.80666 -36.85501 -36.01192 -34.87355 -33.34886 -31.79654 -29.93152 -28.66404 -28.13528 -28.09962 -25.42892 -24.58032 -23.52578 -21.93377 -21.40420 -20.33373 -19.11909 -18.49044 -17.87584 -17.57233 -17.19566 -16.32014 -15.88475 -15.60960 -15.36881 -15.04512 -14.95329 -14.53363 -14.34222 -14.19356 -14.05557 -13.96873 -13.61444 -13.41339 -13.19446 -13.09549 -13.02819 -12.78398 -12.70071 -12.54800 -12.38674 -12.32119 -12.07866 -11.97462 -11.89159 -11.78130 -11.69910 -11.55757 -11.11596 -10.75845 -9.94777 -9.46521 -8.28371 -6.32731 -0.16650 1.33022 1.33274 1.35158 1.43760 1.50177 2.03006 2.14955 2.32159 2.83840 3.05112 3.50649 3.69902 3.91477 3.95651 4.02647 4.10343 4.17926 4.34257 4.43343 4.49758 4.54726 4.69072 4.73180 4.75703 4.76808 4.79618 4.79870 4.86456 4.93422 4.94527 4.96175 5.01059 5.09520 5.21188 5.26719 5.30358 5.38852 5.40501 5.46479 5.63217 6.12271 6.37950 6.58710 6.68169 6.99764 7.29850 8.88224 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011406 B = 0.008649 C = 0.005668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2454.365841 B = 3236.576369 C = 4938.945244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.061 3.939 3 N -0.493 5.493 4 C 0.207 3.793 5 C -0.009 4.009 6 C -0.135 4.135 7 C -0.132 4.132 8 O -0.166 6.166 9 C -0.131 4.131 10 C 0.600 3.400 11 O -0.557 6.557 12 N -0.580 5.580 13 C 0.215 3.785 14 C -0.516 4.516 15 H 0.024 0.976 16 C 0.027 3.973 17 N -0.941 5.941 18 Si 0.924 3.076 19 H -0.255 1.255 20 H -0.283 1.283 21 H -0.245 1.245 22 C 0.127 3.873 23 C -0.151 4.151 24 C -0.145 4.145 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.101 0.899 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.092 0.908 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.602 4.971 -10.285 11.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.064 4.064 3 N -0.224 5.224 4 C 0.002 3.998 5 C -0.029 4.029 6 C -0.193 4.193 7 C -0.189 4.189 8 O -0.051 6.051 9 C -0.186 4.186 10 C 0.388 3.612 11 O -0.440 6.440 12 N -0.309 5.309 13 C 0.094 3.906 14 C -0.555 4.555 15 H 0.042 0.958 16 C -0.172 4.172 17 N -0.581 5.581 18 Si 0.746 3.254 19 H -0.179 1.179 20 H -0.208 1.208 21 H -0.168 1.168 22 C 0.025 3.975 23 C -0.209 4.209 24 C -0.203 4.203 25 H 0.100 0.900 26 H 0.114 0.886 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.121 0.879 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.075 0.925 40 H 0.116 0.884 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.110 0.890 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.142 5.392 -10.135 12.205 hybrid contribution 1.078 -0.783 0.406 1.393 sum -3.064 4.610 -9.729 11.194 Atomic orbital electron populations 1.20305 0.83683 1.04425 1.03836 1.22481 0.99337 0.86288 0.98285 1.70212 1.00298 1.30675 1.21174 1.27401 0.96477 0.80253 0.95678 1.20042 0.89234 0.93209 1.00392 1.21794 1.04509 0.98838 0.94111 1.21803 1.04545 0.98976 0.93575 1.84937 1.29158 1.23187 1.67828 1.22958 0.82009 0.96540 1.17113 1.16595 0.85277 0.82368 0.76930 1.90707 1.16627 1.82627 1.54060 1.48047 1.07544 1.06623 1.68687 1.19767 0.77419 0.96846 0.96573 1.21219 0.94894 1.48034 0.91343 0.95808 1.25588 0.99374 0.94082 0.98129 1.70043 1.16069 1.49707 1.22245 0.86071 0.78318 0.80568 0.80412 1.17947 1.20816 1.16809 1.21289 1.00345 0.78988 0.96844 1.22102 1.01443 1.01995 0.95360 1.22004 1.01719 1.00291 0.96299 0.89955 0.88579 0.89681 0.89158 0.87941 0.94478 0.91019 0.88068 0.92670 0.91130 0.92911 0.94351 0.92399 0.88785 0.92501 0.88403 0.92241 0.95403 0.88981 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.02 9.81 71.24 0.70 -1.33 16 2 C 0.06 2.37 7.16 41.83 0.30 2.67 16 3 N -0.49 -18.46 11.26 -291.06 -3.28 -21.73 16 4 C 0.21 7.88 6.82 88.29 0.60 8.48 16 5 C -0.01 -0.27 3.39 -11.54 -0.04 -0.31 16 6 C -0.13 -3.52 9.18 71.98 0.66 -2.86 16 7 C -0.13 -2.86 9.18 71.98 0.66 -2.20 16 8 O -0.17 -7.40 6.86 -7.04 -0.05 -7.45 16 9 C -0.13 -5.75 6.77 24.05 0.16 -5.59 16 10 C 0.60 26.72 7.58 86.46 0.66 27.38 16 11 O -0.56 -24.81 14.22 -4.30 -0.06 -24.88 16 12 N -0.58 -24.77 2.38 -806.77 -1.92 -26.68 16 13 C 0.22 9.83 3.18 85.63 0.27 10.10 16 14 C -0.52 -28.23 8.10 25.60 0.21 -28.03 16 15 H 0.02 1.52 8.06 -2.91 -0.02 1.49 16 16 C 0.03 1.48 5.47 84.65 0.46 1.94 16 17 N -0.94 -56.12 13.96 21.44 0.30 -55.82 16 18 Si 0.92 40.28 27.47 68.60 1.88 42.17 16 19 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 20 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 21 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 22 C 0.13 4.48 3.24 45.00 0.15 4.62 16 23 C -0.15 -4.16 9.10 71.98 0.66 -3.50 16 24 C -0.15 -5.16 8.92 71.98 0.64 -4.52 16 25 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 26 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 27 H 0.08 2.71 6.61 -2.39 -0.02 2.69 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 2.28 5.26 -2.39 -0.01 2.26 16 36 H 0.04 1.79 4.82 -2.38 -0.01 1.78 16 37 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 38 H 0.09 3.28 6.93 -2.39 -0.02 3.26 16 39 H 0.06 1.65 6.50 -2.39 -0.02 1.64 16 40 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 44 H 0.05 2.09 7.29 -2.39 -0.02 2.07 16 Total: -1.00 -68.53 354.40 3.90 -64.63 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.93 Total: 22.90 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: 6.09 Total: 6.86 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.89 Total: -104.24 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.11 Total: -32.32 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 1.88 Total: 42.17 kcal Total: -68.53 3.90 -64.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567923205.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.345 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds