Wall clock time and date at job start Tue Mar 31 2020 06:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99553 * 2 1 4 4 C 1.52998 * 109.46997 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46984 * 65.00376 * 4 3 2 6 6 C 1.46493 * 119.99968 * 270.00183 * 5 4 3 7 7 C 1.50706 * 109.47263 * 275.31204 * 6 5 4 8 8 H 1.07999 * 119.99759 * 0.02562 * 7 6 5 9 9 C 1.37869 * 120.00156 * 180.02562 * 7 6 5 10 10 N 1.31516 * 120.00117 * 180.02562 * 9 7 6 11 11 Si 1.86796 * 120.00392 * 359.97438 * 9 7 6 12 12 H 1.48507 * 109.47027 * 89.99985 * 11 9 7 13 13 H 1.48492 * 109.47521 * 209.99997 * 11 9 7 14 14 H 1.48496 * 109.47039 * 330.00515 * 11 9 7 15 15 C 1.34773 * 119.99878 * 90.00192 * 5 4 3 16 16 O 1.21630 * 120.00201 * 4.93045 * 15 5 4 17 17 C 1.47267 * 120.00020 * 184.93619 * 15 5 4 18 18 C 1.46689 * 126.94023 * 317.22524 * 17 15 5 19 19 C 1.34485 * 106.33054 * 179.97438 * 18 17 15 20 20 N 1.36450 * 108.85766 * 0.23296 * 19 18 17 21 21 H 0.96997 * 124.84891 * 179.77553 * 20 19 18 22 22 C 1.34653 * 110.29642 * 359.60493 * 20 19 18 23 23 C 1.50704 * 125.80286 * 180.15694 * 22 20 19 24 24 C 1.53008 * 109.46814 * 300.27378 * 23 22 20 25 25 C 1.53001 * 109.47024 * 60.26907 * 23 22 20 26 26 H 1.08997 * 109.47380 * 299.99806 * 1 2 3 27 27 H 1.09000 * 109.47311 * 59.99639 * 1 2 3 28 28 H 1.08998 * 109.46845 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46974 * 60.00496 * 3 2 1 30 30 H 1.09000 * 109.47873 * 300.00098 * 3 2 1 31 31 H 1.09007 * 109.47437 * 305.00601 * 4 3 2 32 32 H 1.09005 * 109.47450 * 185.00381 * 4 3 2 33 33 H 1.09003 * 109.47333 * 35.30781 * 6 5 4 34 34 H 1.08999 * 109.47667 * 155.31659 * 6 5 4 35 35 H 0.97006 * 120.00636 * 180.02562 * 10 9 7 36 36 H 1.08001 * 126.83382 * 359.97438 * 18 17 15 37 37 H 1.07998 * 125.57114 * 179.97438 * 19 18 17 38 38 H 1.09001 * 109.47392 * 180.27450 * 23 22 20 39 39 H 1.09001 * 109.47083 * 59.99882 * 24 23 22 40 40 H 1.08997 * 109.46831 * 179.97438 * 24 23 22 41 41 H 1.08996 * 109.46802 * 299.99840 * 24 23 22 42 42 H 1.09005 * 109.46508 * 60.00606 * 25 23 22 43 43 H 1.08997 * 109.47037 * 180.02562 * 25 23 22 44 44 H 1.09001 * 109.47479 * 300.00490 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9766 0.5642 -1.2510 6 6 4.1062 -0.8923 -1.3405 7 6 5.4569 -1.3095 -0.8181 8 1 6.1492 -0.5642 -0.4553 9 6 5.8086 -2.6425 -0.8033 10 7 6.9871 -3.0066 -0.3470 11 14 4.6109 -3.9316 -1.4301 12 1 4.8299 -4.1459 -2.8832 13 1 4.8313 -5.2073 -0.7029 14 1 3.2192 -3.4663 -1.2028 15 6 4.2632 1.3332 -2.3200 16 8 4.2426 2.5452 -2.2203 17 6 4.6014 0.7060 -3.6088 18 6 5.4762 -0.4518 -3.8232 19 6 5.4933 -0.6723 -5.1497 20 7 4.7054 0.2585 -5.7617 21 1 4.5554 0.3151 -6.7184 22 6 4.1628 1.0850 -4.8476 23 6 3.2345 2.2356 -5.1402 24 6 3.9379 3.2376 -6.0579 25 6 1.9734 1.7108 -5.8295 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6885 1.8464 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 3.8508 0.5685 0.8427 32 1 3.9784 2.1767 0.0903 33 1 3.3248 -1.3639 -0.7446 34 1 4.0073 -1.2027 -2.3806 35 1 7.2348 -3.9444 -0.3369 36 1 6.0020 -1.0150 -3.0664 37 1 6.0442 -1.4554 -5.6493 38 1 2.9605 2.7278 -4.2070 39 1 4.2119 2.7454 -6.9911 40 1 3.2664 4.0696 -6.2699 41 1 4.8363 3.6114 -5.5669 42 1 1.4723 0.9970 -5.1756 43 1 1.3022 2.5431 -6.0415 44 1 2.2474 1.2186 -6.7626 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000586773863.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:06 Heat of formation + Delta-G solvation = -62.921700 kcal Electronic energy + Delta-G solvation = -25183.172965 eV Core-core repulsion = 21714.551125 eV Total energy + Delta-G solvation = -3468.621840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.22830 -40.27595 -38.63702 -36.72783 -35.95249 -34.53479 -32.47572 -30.91250 -29.67029 -29.00959 -28.03731 -27.15365 -24.89133 -24.27794 -22.92530 -22.13448 -21.16952 -19.23354 -18.99870 -18.36752 -17.56758 -17.34088 -16.74692 -16.59032 -16.09794 -15.79508 -15.54472 -15.35496 -15.01647 -14.85222 -14.65763 -14.34358 -14.15683 -13.73322 -13.53896 -13.29637 -13.22236 -13.04022 -12.96352 -12.77865 -12.62950 -12.41980 -12.11590 -12.06281 -11.96975 -11.91585 -11.77570 -11.63193 -10.81505 -10.72486 -10.54179 -9.52806 -9.33909 -8.97806 -8.24290 -6.27243 1.01688 1.39822 1.41573 1.53851 1.67213 2.24055 2.39033 2.43510 2.61187 2.92965 3.10583 3.72861 3.95362 4.05888 4.13696 4.23085 4.27862 4.39492 4.45300 4.51998 4.53505 4.56899 4.66605 4.72410 4.74341 4.83505 4.89175 4.91439 4.93512 4.96015 5.08451 5.13232 5.17087 5.32344 5.36731 5.45666 5.55204 5.81576 5.99099 6.15211 6.25239 6.30899 6.70908 6.77739 6.83177 7.32579 7.47032 8.92073 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011159 B = 0.007421 C = 0.005455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2508.494078 B = 3772.215040 C = 5131.491499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.061 3.939 4 C 0.113 3.887 5 N -0.585 5.585 6 C 0.227 3.773 7 C -0.523 4.523 8 H 0.026 0.974 9 C 0.027 3.973 10 N -0.942 5.942 11 Si 0.932 3.068 12 H -0.255 1.255 13 H -0.284 1.284 14 H -0.252 1.252 15 C 0.585 3.415 16 O -0.599 6.599 17 C -0.259 4.259 18 C -0.186 4.186 19 C -0.015 4.015 20 N -0.531 5.531 21 H 0.431 0.569 22 C 0.101 3.899 23 C -0.036 4.036 24 C -0.135 4.135 25 C -0.138 4.138 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.267 0.733 36 H 0.135 0.865 37 H 0.198 0.802 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.315 6.570 -12.316 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.016 4.016 4 C -0.010 4.010 5 N -0.313 5.313 6 C 0.105 3.895 7 C -0.561 4.561 8 H 0.044 0.956 9 C -0.171 4.171 10 N -0.582 5.582 11 Si 0.755 3.245 12 H -0.180 1.180 13 H -0.210 1.210 14 H -0.176 1.176 15 C 0.376 3.624 16 O -0.484 6.484 17 C -0.269 4.269 18 C -0.210 4.210 19 C -0.142 4.142 20 N -0.128 5.128 21 H 0.271 0.729 22 C -0.018 4.018 23 C -0.056 4.056 24 C -0.193 4.193 25 C -0.196 4.196 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.109 0.891 29 H 0.102 0.898 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.153 0.847 37 H 0.215 0.785 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.100 0.900 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.113 6.822 -12.349 19.261 hybrid contribution 0.152 -0.675 0.277 0.745 sum -12.961 6.147 -12.072 18.749 Atomic orbital electron populations 1.22896 0.79856 1.03450 1.00751 1.87978 1.21299 1.28270 1.95505 1.22890 0.92947 0.84781 1.01031 1.21488 0.93302 0.99312 0.86880 1.47716 1.64150 1.08374 1.11109 1.19613 0.95169 0.76740 0.97954 1.21419 1.00325 0.92723 1.41678 0.95564 1.25586 0.96533 1.00219 0.94807 1.70051 1.22345 1.17693 1.48108 0.85940 0.80559 0.78322 0.79708 1.17951 1.20989 1.17582 1.17848 0.75008 0.85447 0.84089 1.90599 1.57132 1.14793 1.85867 1.20213 1.10660 1.03700 0.92356 1.22636 1.03218 0.98277 0.96826 1.22032 1.01661 0.98076 0.92439 1.41252 1.37745 1.24325 1.09477 0.72937 1.20215 0.99150 0.95106 0.87292 1.19923 0.93451 0.91337 1.00844 1.21763 1.00309 0.98684 0.98500 1.21824 0.95752 1.01753 1.00223 0.92420 0.93773 0.89097 0.89850 0.93817 0.90564 0.89223 0.94738 0.93633 0.92372 0.84713 0.78501 0.90919 0.90983 0.90129 0.94177 0.93794 0.90045 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.89 16 2 O -0.41 -14.33 9.45 -148.98 -1.41 -15.73 16 3 C 0.06 1.99 6.28 71.98 0.45 2.45 16 4 C 0.11 4.56 5.87 86.38 0.51 5.07 16 5 N -0.59 -27.16 2.42 -830.20 -2.01 -29.17 16 6 C 0.23 11.25 3.63 85.64 0.31 11.56 16 7 C -0.52 -29.97 7.89 25.60 0.20 -29.77 16 8 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 9 C 0.03 1.54 5.43 84.65 0.46 2.00 16 10 N -0.94 -57.67 13.96 21.44 0.30 -57.37 16 11 Si 0.93 43.03 27.47 68.60 1.88 44.92 16 12 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 15 C 0.58 27.24 7.26 86.62 0.63 27.87 16 16 O -0.60 -28.95 15.39 -4.13 -0.06 -29.02 16 17 C -0.26 -10.89 5.31 -19.04 -0.10 -10.99 16 18 C -0.19 -7.78 8.68 23.62 0.21 -7.58 16 19 C -0.01 -0.45 11.89 83.12 0.99 0.54 16 20 N -0.53 -13.39 5.90 -182.72 -1.08 -14.47 16 21 H 0.43 6.82 8.96 -92.71 -0.83 5.99 16 22 C 0.10 3.24 5.68 41.78 0.24 3.47 16 23 C -0.04 -0.94 3.24 -11.54 -0.04 -0.98 16 24 C -0.14 -2.79 9.18 71.98 0.66 -2.13 16 25 C -0.14 -2.66 9.18 71.98 0.66 -2.00 16 26 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 3.19 8.07 -2.38 -0.02 3.17 16 32 H 0.09 3.53 7.36 -2.38 -0.02 3.52 16 33 H 0.03 1.74 6.10 -2.39 -0.01 1.73 16 34 H 0.05 2.24 4.67 -2.39 -0.01 2.23 16 35 H 0.27 15.26 8.31 -92.70 -0.77 14.49 16 36 H 0.14 6.75 5.63 -2.91 -0.02 6.73 16 37 H 0.20 4.55 8.06 -2.91 -0.02 4.53 16 38 H 0.07 2.38 6.56 -2.39 -0.02 2.36 16 39 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -75.95 357.21 4.15 -71.79 By element: Atomic # 1 Polarization: 27.53 SS G_CDS: 0.11 Total: 27.64 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: 6.42 Total: 1.41 kcal Atomic # 7 Polarization: -98.22 SS G_CDS: -2.79 Total: -101.01 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.47 Total: -44.75 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.88 Total: 44.92 kcal Total: -75.95 4.15 -71.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586773863.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.870 kcal (2) G-P(sol) polarization free energy of solvation -75.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds