Wall clock time and date at job start Tue Mar 31 2020 06:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.41373 * 126.80610 * 274.71214 * 4 2 1 6 6 C 1.35446 * 103.98877 * 179.88941 * 5 4 2 7 7 C 1.50702 * 126.78002 * 180.10184 * 6 5 4 8 8 N 1.46498 * 109.47355 * 90.29749 * 7 6 5 9 9 C 1.34776 * 119.99538 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00375 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99596 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46917 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46795 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47240 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47256 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00549 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99681 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00603 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99841 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47433 * 59.99531 * 19 17 15 21 21 H 1.48502 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47095 * 299.99641 * 19 17 15 23 23 O 1.34045 * 106.44808 * 0.36876 * 6 5 4 24 24 N 1.20929 * 111.55983 * 359.74820 * 23 6 5 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08002 * 128.00533 * 0.02562 * 5 4 2 33 33 H 1.09003 * 109.46982 * 210.30200 * 7 6 5 34 34 H 1.09007 * 109.46498 * 330.29322 * 7 6 5 35 35 H 0.96995 * 119.99759 * 0.02562 * 8 7 6 36 36 H 1.08996 * 109.47192 * 299.99790 * 11 9 8 37 37 H 1.09006 * 109.46804 * 60.00019 * 11 9 8 38 38 H 1.08996 * 109.47107 * 299.99950 * 12 11 9 39 39 H 1.08997 * 109.47442 * 60.00259 * 12 11 9 40 40 H 1.09003 * 109.47293 * 299.99895 * 13 12 11 41 41 H 1.08998 * 109.47929 * 59.99825 * 13 12 11 42 42 H 1.09003 * 109.46803 * 300.00086 * 14 13 12 43 43 H 1.09003 * 109.46652 * 59.99757 * 14 13 12 44 44 H 0.96998 * 120.00826 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2271 -0.1482 2.5129 6 6 2.6816 -1.1834 3.2587 7 6 3.0527 -1.1491 4.7189 8 7 1.8759 -1.4718 5.5296 9 6 1.9710 -1.5005 6.8737 10 8 3.0308 -1.2598 7.4120 11 6 0.7603 -1.8319 7.7078 12 6 1.1373 -1.7971 9.1902 13 6 -0.0917 -2.1341 10.0369 14 6 0.2850 -2.0988 11.5194 15 6 -0.9256 -2.4301 12.3534 16 1 -1.8695 -2.6441 11.8741 17 6 -0.8285 -2.4590 13.7284 18 7 0.3206 -2.1980 14.3122 19 14 -2.3290 -2.8704 14.7622 20 1 -2.8171 -4.2276 14.4083 21 1 -1.9637 -2.8348 16.2011 22 1 -3.3994 -1.8753 14.4990 23 8 2.7417 -2.2433 2.4401 24 7 2.3784 -1.9620 1.3215 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 2.0517 0.8705 2.8260 33 1 3.8381 -1.8800 4.9114 34 1 3.4115 -0.1532 4.9792 35 1 1.0285 -1.6646 5.0990 36 1 -0.0248 -1.1009 7.5149 37 1 0.4015 -2.8278 7.4477 38 1 1.9223 -2.5284 9.3827 39 1 1.4964 -0.8015 9.4506 40 1 -0.8771 -1.4032 9.8444 41 1 -0.4505 -3.1299 9.7765 42 1 1.0706 -2.8295 11.7122 43 1 0.6435 -1.1028 11.7795 44 1 0.3889 -2.2180 15.2795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588366304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:29 Heat of formation + Delta-G solvation = -14.311861 kcal Electronic energy + Delta-G solvation = -22197.340866 eV Core-core repulsion = 18730.826907 eV Total energy + Delta-G solvation = -3466.513959 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.38110 -39.77630 -37.01451 -35.73213 -34.82674 -32.88191 -32.62446 -32.09077 -29.83959 -27.79897 -27.22927 -25.24692 -24.55934 -22.59662 -22.21199 -20.56165 -20.11454 -19.94608 -18.00261 -17.86068 -16.77801 -16.29455 -16.00045 -15.89738 -15.39395 -14.90921 -14.59525 -14.44922 -14.26144 -13.84615 -13.72930 -13.46278 -12.95789 -12.70459 -12.59337 -12.19829 -12.06310 -11.89115 -11.84013 -11.69752 -11.60380 -11.30393 -10.96586 -10.53870 -10.53045 -10.48514 -10.40941 -10.23823 -9.73450 -9.61124 -9.38176 -9.21630 -8.98528 -8.29414 -5.94253 -3.96846 0.89244 1.75594 2.53410 2.62696 3.14545 3.35932 3.40361 3.42568 3.58066 3.89017 4.38980 4.49596 4.52202 4.59099 4.61082 4.74037 4.85490 5.01872 5.08736 5.15190 5.24830 5.27167 5.31314 5.32856 5.36303 5.41018 5.43467 5.59524 5.67767 5.70883 5.83082 6.06039 6.13313 6.29595 6.54237 6.83882 7.01593 7.19516 7.27154 7.74662 7.82482 7.90867 8.06897 8.12580 8.48741 9.10636 9.66670 11.16961 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.001927 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.384669 B =14527.551405 C =14923.538063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.018 4.018 3 C -0.145 4.145 4 C 0.022 3.978 5 C -0.204 4.204 6 C -0.048 4.048 7 C 0.202 3.798 8 N -0.738 5.738 9 C 0.516 3.484 10 O -0.530 6.530 11 C -0.138 4.138 12 C -0.104 4.104 13 C -0.111 4.111 14 C 0.020 3.980 15 C -0.521 4.521 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 O 0.108 5.892 24 N -0.359 5.359 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.174 0.826 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.403 0.597 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.729 6.199 -30.959 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 C -0.203 4.203 4 C -0.136 4.136 5 C -0.226 4.226 6 C -0.111 4.111 7 C 0.078 3.922 8 N -0.393 5.393 9 C 0.304 3.696 10 O -0.405 6.405 11 C -0.177 4.177 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.017 4.017 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 O 0.039 5.961 24 N -0.060 5.060 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.106 0.894 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.191 0.809 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.238 0.762 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.651 5.359 -31.247 31.913 hybrid contribution -1.269 0.411 0.704 1.508 sum 2.382 5.769 -30.543 31.174 Atomic orbital electron populations 1.21829 0.93199 1.02499 1.02651 1.19543 0.96279 0.95478 0.92471 1.21844 1.01473 0.94212 1.02742 1.23623 1.02039 0.90508 0.97458 1.22487 1.06033 1.01667 0.92458 1.24425 1.03758 0.87199 0.95759 1.19568 0.89472 1.03937 0.79261 1.46139 1.12810 1.73775 1.06596 1.21157 0.91335 0.75779 0.81303 1.90728 1.30353 1.47706 1.71762 1.21808 0.95280 1.03547 0.97109 1.21464 0.99649 1.02823 0.90238 1.21654 0.95288 0.99728 0.98166 1.19095 0.96671 0.97298 0.88669 1.21244 0.96241 1.47152 0.91308 0.92815 1.25040 0.95843 0.95528 0.98160 1.69956 1.24198 1.49486 1.09794 0.86672 0.83247 0.78904 0.79224 1.20295 1.21326 1.20309 1.84877 1.62328 1.34743 1.14121 1.73886 1.15525 1.17151 0.99486 0.91444 0.92339 0.92034 0.89433 0.91458 0.91930 0.92221 0.80868 0.88980 0.87994 0.76233 0.88978 0.88933 0.91709 0.91732 0.93471 0.93443 0.96564 0.96583 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.18 37.16 0.34 -0.40 16 2 C -0.02 -0.11 3.39 -91.77 -0.31 -0.42 16 3 C -0.14 -0.63 8.81 37.16 0.33 -0.30 16 4 C 0.02 0.18 6.22 -82.10 -0.51 -0.33 16 5 C -0.20 -1.44 10.27 -39.39 -0.40 -1.85 16 6 C -0.05 -0.38 6.86 -35.30 -0.24 -0.62 16 7 C 0.20 1.63 6.23 -5.19 -0.03 1.60 16 8 N -0.74 -6.59 5.55 -61.47 -0.34 -6.93 16 9 C 0.52 6.55 7.83 -10.98 -0.09 6.47 16 10 O -0.53 -8.93 15.98 5.56 0.09 -8.85 16 11 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 12 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 13 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 14 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 19 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 O 0.11 1.07 11.20 17.16 0.19 1.26 16 24 N -0.36 -3.74 12.07 33.42 0.40 -3.33 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.24 7.49 -51.93 -0.39 -0.15 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.17 0.86 7.66 -52.49 -0.40 0.45 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.40 2.74 8.46 -40.82 -0.35 2.39 16 36 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -34.15 372.46 -7.65 -41.80 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -7.44 Total: -4.29 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.88 Total: -15.42 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.80 Total: -36.98 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: 0.28 Total: -7.59 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.15 -7.65 -41.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588366304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.488 kcal (2) G-P(sol) polarization free energy of solvation -34.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds