Wall clock time and date at job start Tue Mar 31 2020 06:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.41373 * 126.80610 * 274.71214 * 4 2 1 6 6 C 1.35446 * 103.98877 * 179.88941 * 5 4 2 7 7 C 1.50702 * 126.78002 * 180.10184 * 6 5 4 8 8 N 1.46498 * 109.47355 * 90.29749 * 7 6 5 9 9 C 1.34776 * 119.99538 * 180.02562 * 8 7 6 10 10 O 1.21275 * 120.00375 * 359.97438 * 9 8 7 11 11 C 1.50706 * 119.99596 * 179.97438 * 9 8 7 12 12 C 1.52999 * 109.46917 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.46795 * 180.02562 * 12 11 9 14 14 C 1.53007 * 109.47240 * 180.02562 * 13 12 11 15 15 C 1.50693 * 109.47256 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00549 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99681 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00603 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99841 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47433 * 59.99531 * 19 17 15 21 21 H 1.48502 * 109.47207 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47095 * 299.99641 * 19 17 15 23 23 O 1.34045 * 106.44808 * 0.36876 * 6 5 4 24 24 N 1.20929 * 111.55983 * 359.74820 * 23 6 5 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 28 28 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 29 29 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 30 30 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 31 31 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 32 32 H 1.08002 * 128.00533 * 0.02562 * 5 4 2 33 33 H 1.09003 * 109.46982 * 210.30200 * 7 6 5 34 34 H 1.09007 * 109.46498 * 330.29322 * 7 6 5 35 35 H 0.96995 * 119.99759 * 0.02562 * 8 7 6 36 36 H 1.08996 * 109.47192 * 299.99790 * 11 9 8 37 37 H 1.09006 * 109.46804 * 60.00019 * 11 9 8 38 38 H 1.08996 * 109.47107 * 299.99950 * 12 11 9 39 39 H 1.08997 * 109.47442 * 60.00259 * 12 11 9 40 40 H 1.09003 * 109.47293 * 299.99895 * 13 12 11 41 41 H 1.08998 * 109.47929 * 59.99825 * 13 12 11 42 42 H 1.09003 * 109.46803 * 300.00086 * 14 13 12 43 43 H 1.09003 * 109.46652 * 59.99757 * 14 13 12 44 44 H 0.96998 * 120.00826 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2271 -0.1482 2.5129 6 6 2.6816 -1.1834 3.2587 7 6 3.0527 -1.1491 4.7189 8 7 1.8759 -1.4718 5.5296 9 6 1.9710 -1.5005 6.8737 10 8 3.0308 -1.2598 7.4120 11 6 0.7603 -1.8319 7.7078 12 6 1.1373 -1.7971 9.1902 13 6 -0.0917 -2.1341 10.0369 14 6 0.2850 -2.0988 11.5194 15 6 -0.9256 -2.4301 12.3534 16 1 -1.8695 -2.6441 11.8741 17 6 -0.8285 -2.4590 13.7284 18 7 0.3206 -2.1980 14.3122 19 14 -2.3290 -2.8704 14.7622 20 1 -2.8171 -4.2276 14.4083 21 1 -1.9637 -2.8348 16.2011 22 1 -3.3994 -1.8753 14.4990 23 8 2.7417 -2.2433 2.4401 24 7 2.3784 -1.9620 1.3215 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 2.0517 0.8705 2.8260 33 1 3.8381 -1.8800 4.9114 34 1 3.4115 -0.1532 4.9792 35 1 1.0285 -1.6646 5.0990 36 1 -0.0248 -1.1009 7.5149 37 1 0.4015 -2.8278 7.4477 38 1 1.9223 -2.5284 9.3827 39 1 1.4964 -0.8015 9.4506 40 1 -0.8771 -1.4032 9.8444 41 1 -0.4505 -3.1299 9.7765 42 1 1.0706 -2.8295 11.7122 43 1 0.6435 -1.1028 11.7795 44 1 0.3889 -2.2180 15.2795 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588366304.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:28 Heat of formation + Delta-G solvation = -35.754429 kcal Electronic energy + Delta-G solvation = -22198.270685 eV Core-core repulsion = 18730.826907 eV Total energy + Delta-G solvation = -3467.443778 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -46.03602 -40.78815 -37.50586 -36.82780 -36.26992 -34.59101 -33.46020 -32.86561 -31.43604 -28.48427 -28.02903 -26.79580 -25.12061 -24.05780 -23.00643 -21.79909 -21.39561 -20.69745 -18.70784 -18.60060 -18.38574 -17.64936 -16.99523 -16.90736 -16.48863 -15.98110 -15.81849 -15.29411 -14.89260 -14.78752 -14.55730 -14.49483 -14.16752 -13.75251 -13.57474 -13.45576 -13.22801 -13.03325 -12.77536 -12.56660 -12.41923 -12.36267 -12.25300 -12.12798 -12.09204 -11.77201 -11.35249 -11.33932 -11.21126 -11.05534 -10.97052 -10.52486 -10.46902 -10.22857 -8.16796 -6.28817 0.24799 1.16201 1.41448 1.45278 1.53107 1.63358 1.88512 2.35177 2.43748 3.05983 3.15681 3.29913 3.81860 3.91161 4.01710 4.08399 4.11371 4.15356 4.19467 4.28532 4.44608 4.61090 4.61322 4.71725 4.72529 4.77694 4.88897 4.89806 4.91532 4.94873 4.99832 5.15693 5.23417 5.24834 5.30406 5.35228 5.36124 5.42948 5.59928 5.81393 5.90698 6.27564 6.45482 6.89611 7.19142 7.20567 7.40562 8.95018 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.032460 B = 0.001927 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.384669 B =14527.551405 C =14923.538063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.021 4.021 3 C -0.141 4.141 4 C 0.021 3.979 5 C -0.194 4.194 6 C -0.048 4.048 7 C 0.205 3.795 8 N -0.719 5.719 9 C 0.519 3.481 10 O -0.580 6.580 11 C -0.128 4.128 12 C -0.097 4.097 13 C -0.097 4.097 14 C 0.018 3.982 15 C -0.542 4.542 16 H 0.066 0.934 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.264 1.264 23 O 0.089 5.911 24 N -0.389 5.389 25 H 0.082 0.918 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.198 0.802 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.417 0.583 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.059 0.941 42 H -0.015 1.015 43 H -0.014 1.014 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 6.849 -32.481 33.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.138 4.138 5 C -0.216 4.216 6 C -0.111 4.111 7 C 0.081 3.919 8 N -0.373 5.373 9 C 0.308 3.692 10 O -0.459 6.459 11 C -0.168 4.168 12 C -0.135 4.135 13 C -0.134 4.134 14 C -0.019 4.019 15 C -0.580 4.580 16 H 0.084 0.916 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.189 1.189 23 O 0.023 5.977 24 N -0.094 5.094 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.215 0.785 33 H 0.105 0.895 34 H 0.130 0.870 35 H 0.254 0.746 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.417 5.997 -32.815 33.388 hybrid contribution -0.541 0.230 1.122 1.267 sum 0.876 6.227 -31.692 32.310 Atomic orbital electron populations 1.21812 0.92456 1.01915 1.03655 1.19678 0.96838 0.96208 0.91286 1.21837 1.01141 0.93092 1.03846 1.24101 1.00975 0.90037 0.98645 1.22784 1.04787 1.02401 0.91642 1.24398 1.04064 0.87184 0.95478 1.19579 0.88858 1.04314 0.79183 1.45911 1.13795 1.72147 1.05484 1.21113 0.90554 0.75252 0.82297 1.90723 1.32009 1.50274 1.72874 1.21680 0.95825 1.05997 0.93282 1.21254 0.97643 1.01023 0.93573 1.21456 0.96794 1.00941 0.94241 1.19066 0.95330 0.94458 0.93084 1.21734 0.97202 1.46977 0.92125 0.91627 1.26084 0.99297 0.95220 0.99824 1.70117 1.26808 1.50588 1.10202 0.85452 0.79019 0.79279 0.76980 1.19017 1.21111 1.18914 1.84844 1.62973 1.35570 1.14315 1.73894 1.17056 1.18561 0.99915 0.89873 0.93691 0.91604 0.90010 0.90116 0.91106 0.92728 0.78464 0.89548 0.87025 0.74596 0.86086 0.86468 0.93781 0.93520 0.92027 0.92217 0.99699 0.99575 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.18 71.98 0.66 -0.53 16 2 C -0.02 -0.22 3.39 -11.54 -0.04 -0.25 16 3 C -0.14 -0.91 8.81 71.98 0.63 -0.28 16 4 C 0.02 0.32 6.22 43.57 0.27 0.59 16 5 C -0.19 -2.34 10.27 22.40 0.23 -2.11 16 6 C -0.05 -0.69 6.86 25.04 0.17 -0.51 16 7 C 0.20 3.02 6.23 85.63 0.53 3.55 16 8 N -0.72 -11.35 5.55 -466.78 -2.59 -13.94 16 9 C 0.52 12.45 7.83 87.66 0.69 13.13 16 10 O -0.58 -19.56 15.98 -3.01 -0.05 -19.61 16 11 C -0.13 -2.89 5.70 29.85 0.17 -2.72 16 12 C -0.10 -3.34 4.50 30.59 0.14 -3.20 16 13 C -0.10 -3.87 5.15 30.60 0.16 -3.71 16 14 C 0.02 0.97 4.97 29.85 0.15 1.11 16 15 C -0.54 -31.32 9.11 25.60 0.23 -31.09 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 17 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 18 N -0.94 -58.77 13.29 21.45 0.28 -58.49 16 19 Si 0.97 44.67 29.54 68.60 2.03 46.69 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 O 0.09 1.72 11.20 71.58 0.80 2.52 16 24 N -0.39 -7.96 12.07 -49.55 -0.60 -8.55 16 25 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.35 7.49 -2.39 -0.02 0.33 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.40 16 32 H 0.20 1.30 7.66 -2.91 -0.02 1.28 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.42 4.45 8.46 -92.71 -0.78 3.67 16 36 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.12 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 2.23 8.14 -2.39 -0.02 2.22 16 42 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 43 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -76.32 372.46 4.53 -71.80 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 0.19 Total: 5.55 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.46 Total: -25.97 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -2.90 Total: -80.98 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.75 Total: -17.09 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Total: -76.32 4.53 -71.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588366304.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.042 kcal (2) G-P(sol) polarization free energy of solvation -76.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds