Wall clock time and date at job start Tue Mar 31 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46858 * 2 1 4 4 C 1.36776 * 125.80214 * 270.17442 * 3 2 1 5 5 C 1.47268 * 126.94049 * 0.03663 * 4 3 2 6 6 O 1.21628 * 119.99992 * 54.05142 * 5 4 3 7 7 N 1.34772 * 119.99824 * 234.05190 * 5 4 3 8 8 C 1.46503 * 120.00137 * 185.79982 * 7 5 4 9 9 C 1.50695 * 109.47046 * 89.99914 * 8 7 5 10 10 H 1.08000 * 120.00179 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99779 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99950 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99761 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47124 * 90.00094 * 13 11 9 15 15 H 1.48498 * 109.46860 * 210.00168 * 13 11 9 16 16 H 1.48501 * 109.47150 * 329.99939 * 13 11 9 17 17 C 1.46504 * 119.99990 * 5.79679 * 7 5 4 18 18 C 1.52998 * 109.47451 * 94.53606 * 17 7 5 19 19 O 1.42903 * 109.46969 * 64.99749 * 18 17 7 20 20 C 1.42903 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.46681 * 106.11513 * 180.28677 * 4 3 2 22 22 C 1.34488 * 106.33085 * 359.74653 * 21 4 3 23 23 N 1.34649 * 125.80094 * 90.02871 * 3 2 1 24 24 C 1.46500 * 124.85391 * 359.95707 * 23 3 2 25 25 H 1.09006 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47515 * 299.99503 * 1 2 3 27 27 H 1.09004 * 109.47687 * 60.00236 * 1 2 3 28 28 H 1.09000 * 109.46787 * 240.00336 * 2 1 3 29 29 H 1.09000 * 109.47041 * 120.00075 * 2 1 3 30 30 H 1.08998 * 109.46968 * 209.99717 * 8 7 5 31 31 H 1.08994 * 109.46736 * 329.99634 * 8 7 5 32 32 H 0.96999 * 119.99980 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.46995 * 214.53452 * 17 7 5 34 34 H 1.08997 * 109.47171 * 334.53448 * 17 7 5 35 35 H 1.08995 * 109.47258 * 185.00119 * 18 17 7 36 36 H 1.09001 * 109.46578 * 305.00212 * 18 17 7 37 37 H 1.09001 * 109.46974 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.46949 * 299.99925 * 20 19 18 39 39 H 1.08996 * 109.47102 * 60.00170 * 20 19 18 40 40 H 1.07999 * 126.83858 * 179.73261 * 21 4 3 41 41 H 1.07998 * 125.56986 * 180.02562 * 22 21 4 42 42 H 1.09003 * 109.47275 * 269.72802 * 24 23 3 43 43 H 1.09004 * 109.47366 * 149.72235 * 24 23 3 44 44 H 1.09001 * 109.46780 * 29.72555 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2957 2.1764 -1.1093 5 6 2.1454 1.7661 -2.5157 6 8 1.0830 1.3245 -2.9101 7 7 3.1850 1.8801 -3.3657 8 6 3.0012 1.5930 -4.7905 9 6 2.6005 2.8552 -5.5096 10 1 2.4938 3.7790 -4.9603 11 6 2.3700 2.8307 -6.8688 12 7 2.4994 1.7057 -7.5375 13 14 1.8726 4.3953 -7.7601 14 1 3.0891 5.1053 -8.2303 15 1 1.0189 4.0509 -8.9254 16 1 1.1142 5.2732 -6.8332 17 6 4.4990 2.2911 -2.8648 18 6 5.3408 1.0498 -2.5626 19 8 5.6030 0.3447 -3.7776 20 6 6.3863 -0.8380 -3.6058 21 6 2.7641 3.4756 -0.6152 22 6 2.7397 3.4007 0.7274 23 7 2.2953 2.1633 1.0921 24 6 2.1333 1.7058 2.4744 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9350 1.2174 -5.2088 31 1 2.2206 0.8421 -4.9120 32 1 2.3376 1.6886 -8.4938 33 1 5.0021 2.8966 -3.6189 34 1 4.3738 2.8759 -1.9536 35 1 6.2838 1.3524 -2.1073 36 1 4.7975 0.4008 -1.8759 37 1 6.5407 -1.3154 -4.5735 38 1 7.3511 -0.5750 -3.1720 39 1 5.8644 -1.5261 -2.9408 40 1 3.0682 4.3235 -1.2109 41 1 3.0249 4.1910 1.4059 42 1 1.1260 1.9398 2.8189 43 1 2.8612 2.2087 3.1112 44 1 2.2924 0.6285 2.5215 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589431810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:54 Heat of formation + Delta-G solvation = -30.307882 kcal Electronic energy + Delta-G solvation = -24852.952410 eV Core-core repulsion = 21385.744811 eV Total energy + Delta-G solvation = -3467.207598 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19423 -38.48703 -37.24641 -34.60022 -33.48009 -32.85353 -32.26377 -29.37290 -28.25091 -27.36610 -26.14956 -25.73138 -23.58606 -22.66087 -22.52318 -20.84463 -19.45218 -17.77210 -16.91866 -16.26257 -16.15345 -15.71887 -15.42383 -15.13436 -14.89831 -14.51207 -14.30010 -13.96625 -13.86702 -13.44056 -13.13575 -12.75227 -12.66196 -12.50242 -12.20594 -11.95345 -11.82331 -11.70302 -11.51450 -11.42927 -11.19046 -11.10019 -10.77146 -10.74516 -10.71863 -10.23522 -9.98670 -9.41864 -9.28796 -8.77900 -8.30769 -8.22104 -7.90332 -7.35921 -5.84853 -3.88202 2.27145 2.78084 2.94008 3.41466 3.47219 3.52439 3.89419 4.20693 4.32782 4.61166 4.64763 4.77410 4.93426 4.99847 5.14583 5.26601 5.41004 5.45456 5.47025 5.49306 5.58875 5.64109 5.68924 5.73883 5.80727 5.82478 5.91958 5.96043 6.01022 6.09637 6.26598 6.37045 6.46404 6.50377 7.03812 7.25698 7.41451 7.53305 7.56986 7.75497 7.83138 8.15439 8.47516 8.74152 9.12004 9.38353 9.75517 11.22959 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.005280 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.307016 B = 5301.882388 C = 6103.565664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C 0.072 3.928 4 C -0.203 4.203 5 C 0.579 3.421 6 O -0.544 6.544 7 N -0.583 5.583 8 C 0.248 3.752 9 C -0.522 4.522 10 H 0.055 0.945 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.287 1.287 16 H -0.275 1.275 17 C 0.110 3.890 18 C 0.049 3.951 19 O -0.370 6.370 20 C 0.033 3.967 21 C -0.168 4.168 22 C -0.022 4.022 23 N -0.449 5.449 24 C 0.072 3.928 25 H 0.056 0.944 26 H 0.045 0.955 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.260 0.740 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.033 0.967 39 H 0.034 0.966 40 H 0.145 0.855 41 H 0.163 0.837 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -2.078 21.008 21.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 C -0.042 4.042 4 C -0.213 4.213 5 C 0.366 3.634 6 O -0.423 6.423 7 N -0.313 5.313 8 C 0.129 3.871 9 C -0.561 4.561 10 H 0.073 0.927 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.722 3.278 14 H -0.208 1.208 15 H -0.213 1.213 16 H -0.200 1.200 17 C -0.015 4.015 18 C -0.029 4.029 19 O -0.288 6.288 20 C -0.064 4.064 21 C -0.193 4.193 22 C -0.148 4.148 23 N -0.126 5.126 24 C -0.070 4.070 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.095 0.905 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.101 0.899 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.163 0.837 41 H 0.180 0.820 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.804 -2.425 20.744 21.430 hybrid contribution 0.009 0.900 -0.190 0.919 sum 4.813 -1.525 20.554 21.165 Atomic orbital electron populations 1.21728 0.94022 1.01712 1.02831 1.20091 0.96849 0.89525 1.02667 1.20081 1.04200 0.94734 0.85173 1.20520 1.11906 0.95900 0.92955 1.17378 0.84036 0.78354 0.83674 1.90720 1.27136 1.46360 1.78054 1.48017 1.07319 1.65545 1.10462 1.19314 0.98420 0.96492 0.72890 1.21514 1.46199 0.95508 0.92851 0.92691 1.24904 0.95630 0.96162 0.97393 1.69953 1.49876 1.25445 1.08129 0.86566 0.78378 0.83601 0.79256 1.20781 1.21263 1.20008 1.21616 0.84474 0.94440 1.00965 1.23063 0.97833 0.94848 0.87145 1.88128 1.72351 1.38146 1.30191 1.22677 0.93750 0.87927 1.02081 1.21971 1.06634 0.97549 0.93140 1.21572 1.08940 0.88268 0.96059 1.43345 1.51910 1.11737 1.05627 1.21987 1.02825 1.01571 0.80630 0.92449 0.93624 0.90470 0.89593 0.91868 0.93423 0.94311 0.93002 0.89800 0.88891 0.93553 0.93955 0.89859 0.94884 0.94788 0.83741 0.82014 0.91146 0.90010 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.89 37.16 0.37 -1.58 16 2 C -0.05 -0.72 5.92 -27.88 -0.17 -0.88 16 3 C 0.07 1.09 6.14 -81.88 -0.50 0.58 16 4 C -0.20 -3.70 5.13 -103.35 -0.53 -4.22 16 5 C 0.58 13.35 7.13 -12.59 -0.09 13.26 16 6 O -0.54 -14.68 16.21 5.25 0.09 -14.60 16 7 N -0.58 -13.51 2.44 -176.39 -0.43 -13.94 16 8 C 0.25 6.96 5.02 -5.19 -0.03 6.93 16 9 C -0.52 -15.60 9.39 -34.44 -0.32 -15.92 16 10 H 0.05 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 12 N -0.89 -27.81 13.29 55.43 0.74 -27.08 16 13 Si 0.89 22.79 29.54 -169.99 -5.02 17.77 16 14 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 15 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 16 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 17 C 0.11 2.02 5.80 -4.04 -0.02 1.99 16 18 C 0.05 0.80 6.28 37.16 0.23 1.03 16 19 O -0.37 -6.94 9.12 -35.23 -0.32 -7.26 16 20 C 0.03 0.46 11.01 101.05 1.11 1.57 16 21 C -0.17 -2.56 8.99 -37.50 -0.34 -2.89 16 22 C -0.02 -0.26 11.34 -16.82 -0.19 -0.45 16 23 N -0.45 -5.33 3.09 -119.88 -0.37 -5.70 16 24 C 0.07 0.51 10.82 59.85 0.65 1.16 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.32 7.69 -51.93 -0.40 0.92 16 28 H 0.09 1.34 7.93 -51.93 -0.41 0.93 16 29 H 0.06 0.65 6.92 -51.93 -0.36 0.29 16 30 H 0.05 1.39 6.71 -51.93 -0.35 1.04 16 31 H 0.04 1.23 7.35 -51.93 -0.38 0.85 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.08 1.61 8.11 -51.93 -0.42 1.18 16 34 H 0.09 1.48 4.69 -51.93 -0.24 1.23 16 35 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.14 2.10 7.86 -52.49 -0.41 1.69 16 41 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.41 8.13 -51.93 -0.42 -0.02 16 44 H 0.08 0.50 6.87 -51.93 -0.36 0.14 16 LS Contribution 364.90 15.07 5.50 5.50 Total: -1.00 -36.97 364.90 -6.85 -43.82 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.11 Total: -0.79 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 0.08 Total: 2.28 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: -0.06 Total: -46.71 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.24 Total: -21.86 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.77 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.97 -6.85 -43.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589431810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.510 kcal (2) G-P(sol) polarization free energy of solvation -36.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds