Wall clock time and date at job start Tue Mar 31 2020 06:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50702 * 109.46858 * 2 1 4 4 C 1.36776 * 125.80214 * 270.17442 * 3 2 1 5 5 C 1.47268 * 126.94049 * 0.03663 * 4 3 2 6 6 O 1.21628 * 119.99992 * 54.05142 * 5 4 3 7 7 N 1.34772 * 119.99824 * 234.05190 * 5 4 3 8 8 C 1.46503 * 120.00137 * 185.79982 * 7 5 4 9 9 C 1.50695 * 109.47046 * 89.99914 * 8 7 5 10 10 H 1.08000 * 120.00179 * 0.02562 * 9 8 7 11 11 C 1.37885 * 119.99779 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99950 * 0.02562 * 11 9 8 13 13 Si 1.86805 * 119.99761 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.47124 * 90.00094 * 13 11 9 15 15 H 1.48498 * 109.46860 * 210.00168 * 13 11 9 16 16 H 1.48501 * 109.47150 * 329.99939 * 13 11 9 17 17 C 1.46504 * 119.99990 * 5.79679 * 7 5 4 18 18 C 1.52998 * 109.47451 * 94.53606 * 17 7 5 19 19 O 1.42903 * 109.46969 * 64.99749 * 18 17 7 20 20 C 1.42903 * 113.99793 * 180.02562 * 19 18 17 21 21 C 1.46681 * 106.11513 * 180.28677 * 4 3 2 22 22 C 1.34488 * 106.33085 * 359.74653 * 21 4 3 23 23 N 1.34649 * 125.80094 * 90.02871 * 3 2 1 24 24 C 1.46500 * 124.85391 * 359.95707 * 23 3 2 25 25 H 1.09006 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47515 * 299.99503 * 1 2 3 27 27 H 1.09004 * 109.47687 * 60.00236 * 1 2 3 28 28 H 1.09000 * 109.46787 * 240.00336 * 2 1 3 29 29 H 1.09000 * 109.47041 * 120.00075 * 2 1 3 30 30 H 1.08998 * 109.46968 * 209.99717 * 8 7 5 31 31 H 1.08994 * 109.46736 * 329.99634 * 8 7 5 32 32 H 0.96999 * 119.99980 * 180.02562 * 12 11 9 33 33 H 1.09006 * 109.46995 * 214.53452 * 17 7 5 34 34 H 1.08997 * 109.47171 * 334.53448 * 17 7 5 35 35 H 1.08995 * 109.47258 * 185.00119 * 18 17 7 36 36 H 1.09001 * 109.46578 * 305.00212 * 18 17 7 37 37 H 1.09001 * 109.46974 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.46949 * 299.99925 * 20 19 18 39 39 H 1.08996 * 109.47102 * 60.00170 * 20 19 18 40 40 H 1.07999 * 126.83858 * 179.73261 * 21 4 3 41 41 H 1.07998 * 125.56986 * 180.02562 * 22 21 4 42 42 H 1.09003 * 109.47275 * 269.72802 * 24 23 3 43 43 H 1.09004 * 109.47366 * 149.72235 * 24 23 3 44 44 H 1.09001 * 109.46780 * 29.72555 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2957 2.1764 -1.1093 5 6 2.1454 1.7661 -2.5157 6 8 1.0830 1.3245 -2.9101 7 7 3.1850 1.8801 -3.3657 8 6 3.0012 1.5930 -4.7905 9 6 2.6005 2.8552 -5.5096 10 1 2.4938 3.7790 -4.9603 11 6 2.3700 2.8307 -6.8688 12 7 2.4994 1.7057 -7.5375 13 14 1.8726 4.3953 -7.7601 14 1 3.0891 5.1053 -8.2303 15 1 1.0189 4.0509 -8.9254 16 1 1.1142 5.2732 -6.8332 17 6 4.4990 2.2911 -2.8648 18 6 5.3408 1.0498 -2.5626 19 8 5.6030 0.3447 -3.7776 20 6 6.3863 -0.8380 -3.6058 21 6 2.7641 3.4756 -0.6152 22 6 2.7397 3.4007 0.7274 23 7 2.2953 2.1633 1.0921 24 6 2.1333 1.7058 2.4744 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9350 1.2174 -5.2088 31 1 2.2206 0.8421 -4.9120 32 1 2.3376 1.6886 -8.4938 33 1 5.0021 2.8966 -3.6189 34 1 4.3738 2.8759 -1.9536 35 1 6.2838 1.3524 -2.1073 36 1 4.7975 0.4008 -1.8759 37 1 6.5407 -1.3154 -4.5735 38 1 7.3511 -0.5750 -3.1720 39 1 5.8644 -1.5261 -2.9408 40 1 3.0682 4.3235 -1.2109 41 1 3.0249 4.1910 1.4059 42 1 1.1260 1.9398 2.8189 43 1 2.8612 2.2087 3.1112 44 1 2.2924 0.6285 2.5215 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589431810.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:54 Heat of formation + Delta-G solvation = -55.509745 kcal Electronic energy + Delta-G solvation = -24854.045245 eV Core-core repulsion = 21385.744811 eV Total energy + Delta-G solvation = -3468.300433 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29221 -40.16861 -38.68987 -36.42518 -34.81151 -34.56558 -33.54613 -31.04373 -29.61141 -28.82847 -27.31225 -27.07955 -25.13222 -24.23947 -23.95424 -22.17540 -20.71451 -19.12971 -18.58394 -18.16778 -17.56512 -17.08057 -16.78630 -16.54072 -16.25173 -15.99222 -15.88954 -15.43318 -14.93718 -14.84410 -14.36102 -14.07971 -14.06297 -13.59477 -13.56222 -13.30660 -13.22749 -13.06607 -12.92303 -12.82843 -12.72160 -12.61816 -12.51635 -12.29842 -12.16009 -11.91705 -11.85826 -11.65410 -10.66959 -10.59528 -10.50584 -9.47304 -9.23362 -9.01108 -8.15860 -6.31312 1.07279 1.36046 1.40184 1.50585 1.62279 2.01558 2.27858 2.38931 2.66875 3.00391 3.12634 3.74125 3.93782 4.03193 4.14905 4.19419 4.31495 4.34827 4.36740 4.46208 4.51521 4.52940 4.59412 4.60939 4.61586 4.73761 4.79486 4.84275 4.87701 4.97442 5.00482 5.18195 5.20471 5.32001 5.34786 5.37988 5.64063 5.86109 5.96821 6.15043 6.21359 6.35174 6.50783 6.77667 6.94666 7.33458 7.61393 8.90988 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.005280 C = 0.004586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.307016 B = 5301.882388 C = 6103.565664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.053 4.053 3 C 0.078 3.922 4 C -0.248 4.248 5 C 0.573 3.427 6 O -0.603 6.603 7 N -0.590 5.590 8 C 0.271 3.729 9 C -0.543 4.543 10 H 0.050 0.950 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.970 3.030 14 H -0.262 1.262 15 H -0.279 1.279 16 H -0.273 1.273 17 C 0.107 3.893 18 C 0.055 3.945 19 O -0.416 6.416 20 C 0.028 3.972 21 C -0.198 4.198 22 C 0.011 3.989 23 N -0.439 5.439 24 C 0.061 3.939 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.028 0.972 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.031 0.969 31 H -0.014 1.014 32 H 0.266 0.734 33 H 0.070 0.930 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.142 0.858 41 H 0.210 0.790 42 H 0.084 0.916 43 H 0.113 0.887 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -0.633 24.693 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.091 4.091 3 C -0.038 4.038 4 C -0.258 4.258 5 C 0.363 3.637 6 O -0.486 6.486 7 N -0.319 5.319 8 C 0.149 3.851 9 C -0.582 4.582 10 H 0.068 0.932 11 C -0.192 4.192 12 N -0.569 5.569 13 Si 0.794 3.206 14 H -0.187 1.187 15 H -0.204 1.204 16 H -0.198 1.198 17 C -0.016 4.016 18 C -0.022 4.022 19 O -0.335 6.335 20 C -0.068 4.068 21 C -0.222 4.222 22 C -0.116 4.116 23 N -0.114 5.114 24 C -0.079 4.079 25 H 0.092 0.908 26 H 0.088 0.912 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.125 0.875 30 H 0.049 0.951 31 H 0.004 0.996 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.160 0.840 41 H 0.227 0.773 42 H 0.102 0.898 43 H 0.132 0.868 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.074 -0.974 24.488 25.249 hybrid contribution -0.363 0.380 -1.232 1.339 sum 5.711 -0.594 23.257 23.955 Atomic orbital electron populations 1.21652 0.94057 1.02458 1.01506 1.20114 0.96754 0.89122 1.03113 1.20114 1.03030 0.95162 0.85531 1.20189 1.16392 0.98643 0.90598 1.18193 0.82844 0.76925 0.85770 1.90664 1.29243 1.49030 1.79625 1.47983 1.09633 1.65599 1.08649 1.18661 0.95503 0.94661 0.76250 1.21755 1.47062 0.95702 0.93677 0.93208 1.25891 0.95118 1.00069 0.98166 1.70090 1.50227 1.27863 1.08675 0.85391 0.78652 0.78864 0.77720 1.18657 1.20419 1.19826 1.21887 0.82263 0.95968 1.01453 1.23038 0.99167 0.93573 0.86444 1.88064 1.73569 1.39952 1.31935 1.22855 0.94666 0.86651 1.02624 1.22023 1.08882 0.96468 0.94872 1.22168 1.05476 0.88741 0.95252 1.43663 1.49830 1.11163 1.06733 1.22432 1.04756 1.02925 0.77777 0.90755 0.91233 0.95292 0.92897 0.87530 0.95104 0.99559 0.92534 0.91173 0.86043 0.89409 0.94041 0.89973 0.91850 0.94008 0.84012 0.77306 0.89795 0.86820 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.89 71.98 0.71 -2.99 16 2 C -0.05 -1.40 5.92 29.85 0.18 -1.22 16 3 C 0.08 2.26 6.14 41.78 0.26 2.51 16 4 C -0.25 -9.21 5.13 -19.04 -0.10 -9.31 16 5 C 0.57 28.37 7.13 86.62 0.62 28.98 16 6 O -0.60 -35.67 16.21 -4.12 -0.07 -35.74 16 7 N -0.59 -29.25 2.44 -830.22 -2.03 -31.28 16 8 C 0.27 16.46 5.02 85.63 0.43 16.89 16 9 C -0.54 -34.33 9.39 25.60 0.24 -34.09 16 10 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 11 C 0.01 0.37 5.46 84.66 0.46 0.84 16 12 N -0.93 -60.18 13.29 21.45 0.28 -59.89 16 13 Si 0.97 47.92 29.54 68.60 2.03 49.95 16 14 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 16 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 17 C 0.11 4.06 5.80 86.38 0.50 4.56 16 18 C 0.06 1.78 6.28 71.98 0.45 2.24 16 19 O -0.42 -16.09 9.12 -148.98 -1.36 -17.45 16 20 C 0.03 0.78 11.01 113.37 1.25 2.03 16 21 C -0.20 -5.78 8.99 23.62 0.21 -5.57 16 22 C 0.01 0.22 11.34 83.12 0.94 1.16 16 23 N -0.44 -8.66 3.09 -533.19 -1.65 -10.31 16 24 C 0.06 0.52 10.82 127.77 1.38 1.91 16 25 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 27 H 0.03 1.04 7.69 -2.38 -0.02 1.02 16 28 H 0.05 1.74 7.93 -2.39 -0.02 1.72 16 29 H 0.11 1.83 6.92 -2.39 -0.02 1.82 16 30 H 0.03 1.95 6.71 -2.39 -0.02 1.93 16 31 H -0.01 -0.96 7.35 -2.39 -0.02 -0.98 16 32 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 33 H 0.07 2.80 8.11 -2.38 -0.02 2.79 16 34 H 0.12 3.86 4.69 -2.39 -0.01 3.85 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.14 4.06 7.86 -2.91 -0.02 4.03 16 41 H 0.21 2.14 8.06 -2.91 -0.02 2.12 16 42 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.11 0.35 8.13 -2.38 -0.02 0.33 16 44 H 0.09 0.62 6.87 -2.39 -0.02 0.61 16 Total: -1.00 -89.82 364.90 5.72 -84.10 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.97 Total: 12.66 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 7.54 Total: 7.96 kcal Atomic # 7 Polarization: -98.10 SS G_CDS: -3.39 Total: -101.48 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -1.43 Total: -53.19 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.95 kcal Total: -89.82 5.72 -84.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589431810.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.589 kcal (2) G-P(sol) polarization free energy of solvation -89.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds