Wall clock time and date at job start Tue Mar 31 2020 06:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47104 * 89.98273 * 8 7 5 10 10 C 1.34778 * 120.00054 * 180.02562 * 9 8 7 11 11 O 1.21271 * 119.99830 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99919 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.46926 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47095 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46926 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99956 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46892 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46978 * 119.99698 * 20 18 16 23 23 H 1.48499 * 109.46983 * 239.99946 * 20 18 16 24 24 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 25 25 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 26 26 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 29 29 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 30 30 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 31 31 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 32 32 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 33 33 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 34 34 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 35 35 H 0.97006 * 119.99800 * 359.97438 * 9 8 7 36 36 H 1.08999 * 109.47056 * 299.99739 * 12 10 9 37 37 H 1.09001 * 109.46950 * 60.00092 * 12 10 9 38 38 H 1.08994 * 109.47484 * 299.99982 * 13 12 10 39 39 H 1.09001 * 109.47208 * 60.00278 * 13 12 10 40 40 H 1.08994 * 109.47058 * 300.00388 * 14 13 12 41 41 H 1.09001 * 109.46747 * 60.00140 * 14 13 12 42 42 H 1.08994 * 109.47484 * 300.00127 * 15 14 13 43 43 H 1.09001 * 109.47208 * 60.00423 * 15 14 13 44 44 H 0.96998 * 120.00226 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5613 4.4334 -1.8397 10 6 5.1524 5.3662 -2.6124 11 8 4.4969 6.2774 -3.0714 12 6 6.6280 5.2774 -2.9050 13 6 7.0423 6.4489 -3.7977 14 6 8.5406 6.3591 -4.0943 15 6 8.9549 7.5309 -4.9865 16 6 10.4306 7.4421 -5.2792 17 1 11.0146 6.6313 -4.8694 18 6 11.0354 8.3967 -6.0692 19 7 10.3244 9.3843 -6.5677 20 14 12.8644 8.2863 -6.4325 21 1 13.4315 7.0904 -5.7591 22 1 13.0720 8.1745 -7.8987 23 1 13.5438 9.5066 -5.9280 24 8 2.2923 2.1565 -1.0890 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2428 5.1017 1.7910 31 1 3.5179 4.0837 2.5027 32 1 3.8744 5.0918 1.0795 33 1 2.5677 4.4799 -2.4896 34 1 2.9139 5.4590 -1.0439 35 1 5.0858 3.7051 -1.4716 36 1 7.1869 5.3173 -1.9700 37 1 6.8413 4.3385 -3.4160 38 1 6.4835 6.4086 -4.7327 39 1 6.8290 7.3880 -3.2871 40 1 9.0991 6.3997 -3.1592 41 1 8.7543 5.4200 -4.6047 42 1 8.3965 7.4908 -5.9217 43 1 8.7413 8.4698 -4.4757 44 1 10.7499 10.0561 -7.1232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590019405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:01 Heat of formation + Delta-G solvation = -53.420139 kcal Electronic energy + Delta-G solvation = -22315.111828 eV Core-core repulsion = 18846.902007 eV Total energy + Delta-G solvation = -3468.209821 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.81272 -39.74186 -35.82457 -35.55336 -34.86927 -34.32624 -32.64055 -31.45888 -29.94637 -28.63020 -26.48162 -25.34661 -23.79734 -22.28428 -21.97301 -20.95300 -20.40145 -19.97453 -17.51174 -17.28223 -16.53596 -16.24399 -15.96521 -15.90478 -15.35452 -14.82158 -14.46340 -14.36205 -14.01345 -13.72016 -13.61653 -13.50604 -13.14719 -12.96865 -12.62019 -12.49778 -12.27636 -12.10976 -11.73687 -11.70158 -11.59626 -11.29996 -10.99440 -10.92881 -10.54373 -10.48437 -10.41394 -10.01277 -9.61523 -9.35552 -9.26604 -9.04486 -8.93252 -8.30243 -5.94820 -3.97230 0.87563 2.11633 2.18812 2.63570 3.14820 3.33486 3.40674 3.44649 3.47058 4.15415 4.34765 4.49392 4.51076 4.56957 4.67578 4.79186 4.87319 5.09340 5.20836 5.21476 5.22579 5.31830 5.33586 5.34899 5.38767 5.40745 5.54524 5.63021 5.67049 5.83652 5.93170 6.09073 6.13479 6.29820 6.54445 6.83955 7.01739 7.19852 7.28558 7.31867 7.75030 7.90680 8.06641 8.14342 8.48548 9.10723 9.66447 11.16509 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035576 B = 0.001965 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.866068 B =14243.772033 C =14399.660543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.028 4.028 3 C 0.202 3.798 4 N -0.482 5.482 5 C 0.016 3.984 6 C -0.077 4.077 7 C -0.074 4.074 8 C 0.210 3.790 9 N -0.738 5.738 10 C 0.515 3.485 11 O -0.531 6.531 12 C -0.138 4.138 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 O -0.194 6.194 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.095 0.905 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.402 0.598 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.760 -18.909 16.492 31.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.066 4.066 3 C -0.005 4.005 4 N -0.212 5.212 5 C -0.105 4.105 6 C -0.134 4.134 7 C -0.127 4.127 8 C 0.086 3.914 9 N -0.393 5.393 10 C 0.303 3.697 11 O -0.407 6.407 12 C -0.177 4.177 13 C -0.142 4.142 14 C -0.148 4.148 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 O -0.081 6.081 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.125 0.875 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.237 0.763 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.306 -18.295 16.596 31.976 hybrid contribution 1.275 -0.180 -0.738 1.484 sum -19.032 -18.474 15.858 30.903 Atomic orbital electron populations 1.21787 0.92891 1.03158 1.03045 1.20115 0.97006 0.84053 1.05393 1.26366 0.98801 0.96675 0.78621 1.70413 1.17092 1.03451 1.30222 1.21655 1.02226 0.94648 0.92021 1.20218 1.01955 0.93107 0.98169 1.23058 1.08098 0.86787 0.94779 1.19465 0.82667 0.91394 0.97849 1.46210 1.08682 1.30449 1.53947 1.21163 0.90869 0.80789 0.76845 1.90722 1.65974 1.33440 1.50522 1.21806 0.90362 1.02837 1.02733 1.21464 0.97981 0.95977 0.98735 1.21652 0.92175 1.00889 1.00099 1.19106 0.95845 0.92509 0.94352 1.21326 0.94320 1.09857 1.30304 0.92699 1.25047 0.98030 0.95494 0.96046 1.69983 1.35582 1.13519 1.34352 0.86556 0.85677 0.77893 0.77976 1.19793 1.21059 1.21057 1.84410 1.63802 1.22266 1.37602 0.91721 0.92061 0.90696 0.88689 0.87459 0.90303 0.90229 0.90268 0.89622 0.88046 0.76340 0.88957 0.89030 0.91750 0.91713 0.93446 0.93470 0.96568 0.96551 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.15 0.37 -0.28 16 2 C -0.03 -0.14 6.56 -27.89 -0.18 -0.32 16 3 C 0.20 1.83 7.60 -12.94 -0.10 1.73 16 4 N -0.48 -5.10 11.29 -7.36 -0.08 -5.18 16 5 C 0.02 0.15 7.11 -82.82 -0.59 -0.44 16 6 C -0.08 -0.57 10.05 36.01 0.36 -0.21 16 7 C -0.07 -0.72 6.75 -35.69 -0.24 -0.96 16 8 C 0.21 2.01 5.83 -5.19 -0.03 1.98 16 9 N -0.74 -7.37 5.55 -61.47 -0.34 -7.71 16 10 C 0.52 6.89 7.83 -10.98 -0.09 6.80 16 11 O -0.53 -9.27 15.98 5.56 0.09 -9.18 16 12 C -0.14 -1.78 5.70 -27.88 -0.16 -1.93 16 13 C -0.10 -1.83 4.50 -26.73 -0.12 -1.95 16 14 C -0.11 -2.27 5.15 -26.73 -0.14 -2.40 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -15.02 9.11 -34.44 -0.31 -15.33 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -27.55 13.29 55.43 0.74 -26.81 16 20 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 O -0.19 -1.97 10.78 5.36 0.06 -1.92 16 25 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 28 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.10 0.92 7.80 -51.93 -0.40 0.51 16 35 H 0.40 3.22 8.46 -40.82 -0.35 2.87 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -35.24 374.55 -7.84 -43.08 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -7.46 Total: -3.41 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -1.46 Total: -11.44 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 0.31 Total: -39.70 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.15 Total: -11.10 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.24 -7.84 -43.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590019405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.344 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds