Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50702 * 109.47290 * 2 1 4 4 N 1.30258 * 125.61823 * 89.97535 * 3 2 1 5 5 C 1.34472 * 108.70247 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.16629 * 180.02562 * 5 4 3 7 7 C 1.34327 * 107.67005 * 0.02562 * 5 4 3 8 8 C 1.50701 * 126.44653 * 180.02562 * 7 5 4 9 9 N 1.46500 * 109.47104 * 89.98273 * 8 7 5 10 10 C 1.34778 * 120.00054 * 180.02562 * 9 8 7 11 11 O 1.21271 * 119.99830 * 0.02562 * 10 9 8 12 12 C 1.50703 * 119.99919 * 179.97438 * 10 9 8 13 13 C 1.52999 * 109.46926 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47095 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47095 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46926 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99956 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99861 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99898 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00022 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46892 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.46978 * 119.99698 * 20 18 16 23 23 H 1.48499 * 109.46983 * 239.99946 * 20 18 16 24 24 O 1.33964 * 125.62261 * 270.00512 * 3 2 1 25 25 H 1.09005 * 109.47051 * 299.99833 * 1 2 3 26 26 H 1.08995 * 109.47275 * 59.99605 * 1 2 3 27 27 H 1.09002 * 109.47131 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47334 * 240.00520 * 2 1 3 29 29 H 1.09003 * 109.47256 * 119.99747 * 2 1 3 30 30 H 1.08998 * 109.47177 * 269.97578 * 6 5 4 31 31 H 1.09005 * 109.46916 * 29.98023 * 6 5 4 32 32 H 1.09004 * 109.46850 * 149.97548 * 6 5 4 33 33 H 1.08999 * 109.47037 * 209.97802 * 8 7 5 34 34 H 1.09001 * 109.47192 * 329.98291 * 8 7 5 35 35 H 0.97006 * 119.99800 * 359.97438 * 9 8 7 36 36 H 1.08999 * 109.47056 * 299.99739 * 12 10 9 37 37 H 1.09001 * 109.46950 * 60.00092 * 12 10 9 38 38 H 1.08994 * 109.47484 * 299.99982 * 13 12 10 39 39 H 1.09001 * 109.47208 * 60.00278 * 13 12 10 40 40 H 1.08994 * 109.47058 * 300.00388 * 14 13 12 41 41 H 1.09001 * 109.46747 * 60.00140 * 14 13 12 42 42 H 1.08994 * 109.47484 * 300.00127 * 15 14 13 43 43 H 1.09001 * 109.47208 * 60.00423 * 15 14 13 44 44 H 0.96998 * 120.00226 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2848 2.1362 1.0589 5 6 2.7133 3.3493 0.6676 6 6 3.1149 4.4852 1.5728 7 6 2.7188 3.3661 -0.6755 8 6 3.1269 4.5200 -1.5548 9 7 4.5613 4.4334 -1.8397 10 6 5.1524 5.3662 -2.6124 11 8 4.4969 6.2774 -3.0714 12 6 6.6280 5.2774 -2.9050 13 6 7.0423 6.4489 -3.7977 14 6 8.5406 6.3591 -4.0943 15 6 8.9549 7.5309 -4.9865 16 6 10.4306 7.4421 -5.2792 17 1 11.0146 6.6313 -4.8694 18 6 11.0354 8.3967 -6.0692 19 7 10.3244 9.3843 -6.5677 20 14 12.8644 8.2863 -6.4325 21 1 13.4315 7.0904 -5.7591 22 1 13.0720 8.1745 -7.8987 23 1 13.5438 9.5066 -5.9280 24 8 2.2923 2.1565 -1.0890 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.2428 5.1017 1.7910 31 1 3.5179 4.0837 2.5027 32 1 3.8744 5.0918 1.0795 33 1 2.5677 4.4799 -2.4896 34 1 2.9139 5.4590 -1.0439 35 1 5.0858 3.7051 -1.4716 36 1 7.1869 5.3173 -1.9700 37 1 6.8413 4.3385 -3.4160 38 1 6.4835 6.4086 -4.7327 39 1 6.8290 7.3880 -3.2871 40 1 9.0991 6.3997 -3.1592 41 1 8.7543 5.4200 -4.6047 42 1 8.3965 7.4908 -5.9217 43 1 8.7413 8.4698 -4.4757 44 1 10.7499 10.0561 -7.1232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590019405.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = -78.373858 kcal Electronic energy + Delta-G solvation = -22316.193902 eV Core-core repulsion = 18846.902007 eV Total energy + Delta-G solvation = -3469.291896 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.52013 -40.81713 -36.86454 -36.40663 -36.22460 -34.93288 -34.60200 -32.28483 -31.39553 -29.56265 -27.61509 -26.59577 -24.62500 -23.80703 -22.64802 -21.82120 -21.63594 -21.32707 -18.45140 -18.36282 -18.07660 -17.34204 -17.00749 -16.86646 -16.47735 -16.12305 -15.56847 -15.37115 -14.88325 -14.55293 -14.46822 -14.43186 -14.25876 -13.90674 -13.59798 -13.56509 -13.47532 -13.26644 -13.08754 -12.83867 -12.63611 -12.31310 -12.14148 -12.12877 -12.09890 -11.97448 -11.66798 -11.36621 -11.36385 -11.18161 -10.90331 -10.54959 -10.28585 -9.74667 -8.18230 -6.30145 0.16256 1.40774 1.41605 1.42308 1.50550 1.55058 1.59409 2.25917 2.42503 2.89335 3.14538 3.47165 3.70323 3.81106 3.97273 4.05881 4.16658 4.17967 4.20843 4.28433 4.44736 4.62300 4.67273 4.68204 4.69308 4.72136 4.85719 4.88583 4.89503 4.93703 5.02278 5.04118 5.19619 5.21022 5.24688 5.34217 5.34488 5.40840 5.58584 5.79760 5.89422 6.26328 6.40933 6.61162 6.88641 7.15752 7.39421 8.94092 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.035576 B = 0.001965 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.866068 B =14243.772033 C =14399.660543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.029 4.029 3 C 0.205 3.795 4 N -0.509 5.509 5 C 0.011 3.989 6 C -0.076 4.076 7 C -0.085 4.085 8 C 0.214 3.786 9 N -0.719 5.719 10 C 0.519 3.481 11 O -0.580 6.580 12 C -0.128 4.128 13 C -0.096 4.096 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.541 4.541 17 H 0.066 0.934 18 C -0.007 4.007 19 N -0.937 5.937 20 Si 0.969 3.031 21 H -0.258 1.258 22 H -0.279 1.279 23 H -0.279 1.279 24 O -0.206 6.206 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.415 0.585 36 H 0.121 0.879 37 H 0.117 0.883 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.061 0.939 41 H 0.059 0.941 42 H -0.015 1.015 43 H -0.014 1.014 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.836 -21.247 17.680 33.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.002 4.002 4 N -0.239 5.239 5 C -0.110 4.110 6 C -0.133 4.133 7 C -0.137 4.137 8 C 0.091 3.909 9 N -0.373 5.373 10 C 0.307 3.693 11 O -0.459 6.459 12 C -0.167 4.167 13 C -0.135 4.135 14 C -0.134 4.134 15 C -0.020 4.020 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.204 4.204 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.205 1.205 23 H -0.205 1.205 24 O -0.094 6.094 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.131 0.869 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.125 0.875 35 H 0.252 0.748 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.003 0.997 43 H 0.004 0.996 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.383 -20.680 17.824 33.482 hybrid contribution 0.906 0.513 -1.084 1.503 sum -18.477 -20.168 16.740 32.068 Atomic orbital electron populations 1.21772 0.92278 1.04361 1.02081 1.20396 0.97380 0.81983 1.06884 1.27233 0.97292 0.97621 0.78024 1.70450 1.18378 1.04087 1.31026 1.22034 1.01594 0.94989 0.92385 1.20293 1.02519 0.92584 0.97945 1.22964 1.09162 0.86865 0.94715 1.19423 0.82073 0.91830 0.97613 1.45996 1.09026 1.29764 1.52529 1.21166 0.90915 0.80544 0.76647 1.90716 1.66931 1.35551 1.52685 1.21680 0.90336 1.01473 1.03218 1.21255 0.95809 0.97588 0.98806 1.21452 0.94106 0.98480 0.99360 1.19072 0.95087 0.93895 0.93930 1.21795 0.95443 1.10231 1.30430 0.91614 1.26088 1.03634 0.94973 0.95744 1.70134 1.38036 1.14472 1.35121 0.85338 0.78905 0.78481 0.77935 1.18146 1.20511 1.20473 1.84410 1.64143 1.22565 1.38235 0.92845 0.92829 0.88408 0.86900 0.86191 0.89441 0.89919 0.89578 0.90382 0.87462 0.74797 0.86081 0.86467 0.93769 0.93516 0.92022 0.92182 0.99668 0.99556 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.03 -0.24 6.56 29.85 0.20 -0.04 16 3 C 0.21 3.47 7.60 88.34 0.67 4.14 16 4 N -0.51 -10.28 11.29 -291.98 -3.30 -13.58 16 5 C 0.01 0.20 7.11 41.26 0.29 0.49 16 6 C -0.08 -1.03 10.05 71.24 0.72 -0.31 16 7 C -0.08 -1.57 6.75 24.79 0.17 -1.40 16 8 C 0.21 3.94 5.83 85.63 0.50 4.44 16 9 N -0.72 -13.17 5.55 -466.79 -2.59 -15.76 16 10 C 0.52 13.25 7.83 87.66 0.69 13.94 16 11 O -0.58 -20.39 15.98 -3.00 -0.05 -20.44 16 12 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 13 C -0.10 -3.39 4.50 30.59 0.14 -3.26 16 14 C -0.10 -3.90 5.15 30.59 0.16 -3.74 16 15 C 0.02 0.95 4.97 29.85 0.15 1.09 16 16 C -0.54 -31.39 9.11 25.60 0.23 -31.16 16 17 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 18 C -0.01 -0.43 5.46 84.66 0.46 0.03 16 19 N -0.94 -58.95 13.29 21.45 0.28 -58.67 16 20 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 21 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 O -0.21 -4.00 10.78 -3.73 -0.04 -4.04 16 25 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 28 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.09 1.02 7.79 -2.38 -0.02 1.00 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 1.88 7.80 -2.39 -0.02 1.86 16 35 H 0.42 5.60 8.46 -92.70 -0.78 4.81 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.12 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 39 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 40 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 42 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 43 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -78.12 374.55 1.78 -76.34 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: 0.20 Total: 8.18 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: 5.25 Total: -18.92 kcal Atomic # 7 Polarization: -82.40 SS G_CDS: -5.60 Total: -88.00 kcal Atomic # 8 Polarization: -24.39 SS G_CDS: -0.09 Total: -24.48 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -78.12 1.78 -76.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590019405.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.039 kcal (2) G-P(sol) polarization free energy of solvation -78.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds