Wall clock time and date at job start Tue Mar 31 2020 06:50:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47064 * 2 1 4 4 N 1.30171 * 126.79933 * 268.26358 * 3 2 1 5 5 O 1.20928 * 111.60321 * 179.97438 * 4 3 2 6 6 C 1.34032 * 111.56607 * 359.76453 * 5 4 3 7 7 C 1.35454 * 106.44972 * 0.37945 * 6 5 4 8 8 C 1.50692 * 128.00581 * 179.91569 * 7 6 5 9 9 N 1.46500 * 109.47561 * 6.58393 * 8 7 6 10 10 C 1.46502 * 119.99977 * 270.08455 * 9 8 7 11 11 C 1.34770 * 120.00157 * 89.81162 * 9 8 7 12 12 O 1.21281 * 119.99949 * 0.02562 * 11 9 8 13 13 C 1.50696 * 120.00126 * 180.02562 * 11 9 8 14 14 C 1.53006 * 109.47338 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47306 * 180.02562 * 14 13 11 16 16 C 1.52996 * 109.47255 * 180.02562 * 15 14 13 17 17 C 1.50700 * 109.47609 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99196 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00325 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99713 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47628 * 89.99963 * 21 19 17 23 23 H 1.48506 * 109.47171 * 210.00089 * 21 19 17 24 24 H 1.48507 * 109.47203 * 329.99609 * 21 19 17 25 25 H 1.09002 * 109.46973 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47296 * 300.00068 * 1 2 3 27 27 H 1.08999 * 109.47309 * 60.00513 * 1 2 3 28 28 H 1.08993 * 109.47617 * 239.99676 * 2 1 3 29 29 H 1.09006 * 109.46950 * 119.99420 * 2 1 3 30 30 H 1.08004 * 126.77916 * 180.28886 * 6 5 4 31 31 H 1.09003 * 109.46891 * 246.58403 * 8 7 6 32 32 H 1.09005 * 109.47353 * 126.58639 * 8 7 6 33 33 H 1.08995 * 109.47400 * 264.52930 * 10 9 8 34 34 H 1.09008 * 109.47125 * 24.52381 * 10 9 8 35 35 H 1.08999 * 109.47249 * 144.51968 * 10 9 8 36 36 H 1.08996 * 109.47620 * 299.99742 * 13 11 9 37 37 H 1.09005 * 109.47125 * 60.00184 * 13 11 9 38 38 H 1.09001 * 109.47144 * 300.00341 * 14 13 11 39 39 H 1.08997 * 109.46709 * 59.99832 * 14 13 11 40 40 H 1.09001 * 109.47239 * 300.00211 * 15 14 13 41 41 H 1.08997 * 109.47433 * 60.00203 * 15 14 13 42 42 H 1.09001 * 109.47076 * 300.00196 * 16 15 14 43 43 H 1.08997 * 109.47354 * 59.99702 * 16 15 14 44 44 H 0.97002 * 119.99176 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3220 2.1454 -1.0419 5 8 2.7015 3.2491 -0.7250 6 6 2.7078 3.4046 0.6062 7 6 2.2818 2.2309 1.1315 8 6 2.1077 1.8738 2.5851 9 7 2.3255 3.0647 3.4101 10 6 3.6696 3.3805 3.9000 11 6 1.2905 3.8726 3.7138 12 8 0.1786 3.6136 3.3045 13 6 1.5147 5.0979 4.5620 14 6 0.1875 5.8344 4.7551 15 6 0.4152 7.0787 5.6157 16 6 -0.9120 7.8147 5.8094 17 6 -0.6876 9.0407 6.6565 18 1 0.3026 9.2715 7.0207 19 6 -1.7466 9.8671 6.9674 20 7 -2.9524 9.5857 6.5243 21 14 -1.4682 11.3872 8.0169 22 1 -1.1468 12.5419 7.1404 23 1 -2.6980 11.6835 8.7949 24 1 -0.3387 11.1444 8.9500 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 2.9970 4.2903 1.1525 31 1 2.8299 1.1048 2.8593 32 1 1.0975 1.4984 2.7486 33 1 3.7902 2.9871 4.9093 34 1 4.4117 2.9276 3.2425 35 1 3.8070 4.4618 3.9126 36 1 1.9100 4.8003 5.5331 37 1 2.2270 5.7575 4.0663 38 1 -0.2075 6.1321 3.7838 39 1 -0.5251 5.1749 5.2505 40 1 0.8105 6.7813 6.5870 41 1 1.1277 7.7379 5.1199 42 1 -1.3076 8.1121 4.8382 43 1 -1.6242 7.1553 6.3053 44 1 -3.6974 10.1669 6.7434 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590513579.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:03 Heat of formation + Delta-G solvation = -23.103728 kcal Electronic energy + Delta-G solvation = -23185.569945 eV Core-core repulsion = 19718.674742 eV Total energy + Delta-G solvation = -3466.895203 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -45.95381 -40.99445 -37.45779 -36.58212 -36.18577 -34.63101 -33.31041 -32.08838 -31.49377 -29.09464 -27.73811 -26.60581 -25.43901 -24.17412 -22.60877 -21.93154 -21.65201 -19.99135 -18.66584 -18.52056 -18.41701 -17.79672 -17.06200 -16.91974 -16.46393 -16.23631 -15.64328 -15.22511 -14.72674 -14.53742 -14.52857 -14.21908 -13.92204 -13.62133 -13.60702 -13.55785 -13.49268 -13.31016 -12.94309 -12.81228 -12.63489 -12.50267 -12.32246 -12.13079 -12.09887 -11.87794 -11.35885 -11.32388 -11.13334 -10.89863 -10.74193 -10.54445 -10.36076 -9.80626 -8.18144 -6.30278 0.50438 1.18085 1.41014 1.43218 1.54223 1.61956 1.94086 2.31709 2.42519 3.14791 3.16828 3.55684 3.65992 3.94569 4.04110 4.08305 4.15175 4.27578 4.28675 4.33502 4.39052 4.44183 4.62673 4.66100 4.68987 4.78313 4.82970 4.86994 4.89299 4.92504 5.05145 5.06556 5.07163 5.20921 5.27190 5.34427 5.39407 5.53041 5.58577 5.79531 5.89312 6.25980 6.33361 6.88725 7.18455 7.25351 7.39540 8.94193 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026206 B = 0.002472 C = 0.002431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.212725 B =11325.587383 C =11513.241766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.045 4.045 3 C 0.022 3.978 4 N -0.396 5.396 5 O 0.080 5.920 6 C -0.046 4.046 7 C -0.218 4.218 8 C 0.195 3.805 9 N -0.615 5.615 10 C 0.066 3.934 11 C 0.510 3.490 12 O -0.583 6.583 13 C -0.126 4.126 14 C -0.097 4.097 15 C -0.094 4.094 16 C 0.018 3.982 17 C -0.540 4.540 18 H 0.067 0.933 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.969 3.031 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.258 1.258 25 H 0.088 0.912 26 H 0.047 0.953 27 H 0.038 0.962 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.231 0.769 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.062 0.938 41 H 0.062 0.938 42 H -0.017 1.017 43 H -0.017 1.017 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.128 -20.138 -8.485 29.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C -0.137 4.137 4 N -0.104 5.104 5 O 0.018 5.982 6 C -0.128 4.128 7 C -0.224 4.224 8 C 0.072 3.928 9 N -0.348 5.348 10 C -0.075 4.075 11 C 0.300 3.700 12 O -0.462 6.462 13 C -0.165 4.165 14 C -0.135 4.135 15 C -0.132 4.132 16 C -0.019 4.019 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.205 4.205 20 N -0.580 5.580 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.182 1.182 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.105 0.895 29 H 0.130 0.870 30 H 0.247 0.753 31 H 0.146 0.854 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 18.389 -20.413 -10.006 29.240 hybrid contribution -0.804 1.005 1.004 1.632 sum 17.585 -19.408 -9.002 27.694 Atomic orbital electron populations 1.21707 0.94131 1.03285 1.01245 1.20094 0.96129 0.86786 1.05240 1.23941 1.01387 1.00427 0.87975 1.73822 1.17848 0.93325 1.25416 1.84768 1.62960 1.26343 1.24092 1.26076 1.02433 1.01497 0.82745 1.21921 1.07226 0.94630 0.98584 1.19636 1.03731 0.87640 0.81796 1.47941 1.09894 1.25401 1.51555 1.22211 0.80668 1.03567 1.01088 1.21280 0.83788 0.84979 0.79990 1.90714 1.25901 1.74311 1.55272 1.21712 0.99357 0.93934 1.01509 1.21256 0.96713 0.96312 0.99220 1.21433 0.97554 0.95193 0.98998 1.19063 0.93925 0.94419 0.94515 1.21765 0.94944 1.09174 1.31912 0.91438 1.26103 0.94847 1.01846 0.97701 1.70140 1.00698 1.39820 1.47321 0.85387 0.77895 0.78749 0.78645 1.19747 1.21056 1.18166 0.89312 0.93368 0.94230 0.89486 0.87028 0.75271 0.85406 0.90180 0.90542 0.88878 0.89290 0.86285 0.86066 0.94167 0.94094 0.91973 0.91932 0.99905 0.99832 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.89 71.98 0.71 -1.60 16 2 C -0.04 -0.64 6.44 29.85 0.19 -0.45 16 3 C 0.02 0.46 6.58 43.58 0.29 0.75 16 4 N -0.40 -9.95 12.07 -49.56 -0.60 -10.55 16 5 O 0.08 1.88 11.20 71.70 0.80 2.68 16 6 C -0.05 -0.86 11.67 67.18 0.78 -0.08 16 7 C -0.22 -4.05 6.26 -19.74 -0.12 -4.18 16 8 C 0.20 2.94 5.90 85.63 0.50 3.45 16 9 N -0.62 -9.41 2.30 -851.14 -1.96 -11.37 16 10 C 0.07 0.41 10.15 127.77 1.30 1.71 16 11 C 0.51 12.46 7.67 87.66 0.67 13.14 16 12 O -0.58 -20.68 15.56 -3.03 -0.05 -20.73 16 13 C -0.13 -2.79 4.32 29.85 0.13 -2.66 16 14 C -0.10 -3.38 4.50 30.59 0.14 -3.24 16 15 C -0.09 -3.73 5.15 30.59 0.16 -3.58 16 16 C 0.02 0.98 4.97 29.85 0.15 1.13 16 17 C -0.54 -31.07 9.11 25.60 0.23 -30.84 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 19 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 20 N -0.94 -59.22 13.29 21.45 0.28 -58.93 16 21 Si 0.97 44.57 29.54 68.60 2.03 46.59 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H -0.26 -11.08 7.11 99.48 0.71 -10.38 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.11 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.23 2.95 7.96 -2.91 -0.02 2.93 16 31 H 0.13 1.00 8.07 -2.39 -0.02 0.98 16 32 H 0.08 1.58 7.43 -2.38 -0.02 1.56 16 33 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.09 0.27 8.03 -2.38 -0.02 0.25 16 35 H 0.09 0.39 6.66 -2.39 -0.02 0.37 16 36 H 0.12 2.05 8.11 -2.39 -0.02 2.03 16 37 H 0.12 1.98 7.41 -2.38 -0.02 1.97 16 38 H 0.04 1.56 8.10 -2.39 -0.02 1.54 16 39 H 0.04 1.59 8.10 -2.39 -0.02 1.57 16 40 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -80.82 370.69 7.06 -73.76 By element: Atomic # 1 Polarization: 4.05 SS G_CDS: 0.96 Total: 5.01 kcal Atomic # 6 Polarization: -32.05 SS G_CDS: 5.59 Total: -26.46 kcal Atomic # 7 Polarization: -78.58 SS G_CDS: -2.27 Total: -80.86 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: 0.76 Total: -18.04 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -80.82 7.06 -73.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590513579.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.653 kcal (2) G-P(sol) polarization free energy of solvation -80.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds