Wall clock time and date at job start Tue Mar 31 2020 07:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47217 * 2 1 4 4 C 1.50695 * 109.47210 * 120.00603 * 2 1 3 5 5 H 1.07998 * 120.00369 * 117.41897 * 4 2 1 6 6 C 1.37885 * 119.99763 * 297.41863 * 4 2 1 7 7 N 1.31517 * 119.99649 * 4.41926 * 6 4 2 8 8 Si 1.86794 * 119.99933 * 184.42037 * 6 4 2 9 9 H 1.48504 * 109.47242 * 265.05277 * 8 6 4 10 10 H 1.48501 * 109.47191 * 145.05240 * 8 6 4 11 11 H 1.48500 * 109.47247 * 25.04924 * 8 6 4 12 12 C 1.53003 * 109.46769 * 240.00307 * 2 1 3 13 13 N 1.46501 * 109.47289 * 60.00081 * 12 2 1 14 14 C 1.35153 * 124.21317 * 269.71982 * 13 12 2 15 15 O 1.21243 * 127.39829 * 2.71578 * 14 13 12 16 16 C 1.51259 * 105.21734 * 182.62043 * 14 13 12 17 17 H 1.09003 * 110.39974 * 110.70471 * 16 14 13 18 18 C 1.52533 * 111.49403 * 233.22459 * 16 14 13 19 19 C 1.54912 * 106.99219 * 208.04560 * 18 16 14 20 20 C 1.50579 * 107.62605 * 282.75595 * 19 18 16 21 21 C 1.50714 * 116.24665 * 65.40115 * 20 19 18 22 22 C 1.52321 * 112.36425 * 275.56579 * 21 20 19 23 23 N 1.45846 * 103.56244 * 353.02825 * 16 14 13 24 24 C 1.33933 * 107.19102 * 9.22283 * 23 16 14 25 25 O 1.21528 * 124.20275 * 171.58335 * 24 23 16 26 26 H 1.09000 * 109.46810 * 294.07943 * 1 2 3 27 27 H 1.08999 * 109.47030 * 54.08091 * 1 2 3 28 28 H 1.08998 * 109.47195 * 174.08228 * 1 2 3 29 29 H 1.08998 * 109.47676 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47487 * 300.00150 * 3 2 1 31 31 H 1.09004 * 109.47258 * 60.00363 * 3 2 1 32 32 H 0.97000 * 119.99426 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46970 * 180.02562 * 12 2 1 34 34 H 1.08999 * 109.47179 * 300.00002 * 12 2 1 35 35 H 1.08996 * 109.94564 * 327.41440 * 18 16 14 36 36 H 1.08996 * 109.94858 * 88.67571 * 18 16 14 37 37 H 1.09003 * 109.82854 * 42.28977 * 19 18 16 38 38 H 1.08996 * 109.82824 * 163.22628 * 19 18 16 39 39 H 1.08996 * 108.12912 * 187.16721 * 20 19 18 40 40 H 1.08999 * 108.12570 * 303.64760 * 20 19 18 41 41 H 1.08998 * 108.90268 * 36.31100 * 21 20 19 42 42 H 1.09000 * 108.90046 * 154.91564 * 21 20 19 43 43 H 1.09001 * 109.97441 * 322.57593 * 22 21 20 44 44 H 1.09000 * 109.97221 * 201.26243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6185 -1.6123 1.1318 6 6 1.7437 -0.2093 2.4820 7 7 0.9583 0.8383 2.6057 8 14 2.4683 -1.0182 4.0019 9 1 1.4946 -1.9931 4.5556 10 1 2.7639 0.0199 5.0218 11 1 3.7225 -1.7244 3.6365 12 6 2.0400 -0.7212 -1.2493 13 7 1.5516 -0.0305 -2.4455 14 6 0.3883 -0.3211 -3.0691 15 8 -0.4424 -1.1383 -2.7344 16 6 0.3439 0.5936 -4.2729 17 1 0.4593 0.0184 -5.1916 18 6 -0.9540 1.3935 -4.3194 19 6 -1.2411 1.7044 -5.8096 20 6 -0.3321 2.8313 -6.2236 21 6 1.1448 2.5309 -6.2231 22 6 1.7720 2.7094 -4.8466 23 7 1.4976 1.4653 -4.0829 24 6 2.2069 0.9663 -3.0623 25 8 3.3068 1.3662 -2.7346 26 1 -0.3633 0.4193 0.9383 27 1 -0.3633 0.6029 -0.8322 28 1 -0.3633 -1.0222 -0.1059 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.7550 1.1907 3.4863 33 1 3.1300 -0.7216 -1.2491 34 1 1.6766 -1.7489 -1.2494 35 1 -1.7690 0.8047 -3.8987 36 1 -0.8384 2.3226 -3.7613 37 1 -1.0372 0.8227 -6.4172 38 1 -2.2817 2.0053 -5.9307 39 1 -0.6145 3.1429 -7.2292 40 1 -0.5072 3.6722 -5.5525 41 1 1.2959 1.5019 -6.5493 42 1 1.6415 3.2002 -6.9255 43 1 1.3224 3.5637 -4.3404 44 1 2.8476 2.8569 -4.9438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591422554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:35 Heat of formation + Delta-G solvation = -46.079262 kcal Electronic energy + Delta-G solvation = -25826.251294 eV Core-core repulsion = 22358.359798 eV Total energy + Delta-G solvation = -3467.891497 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.20024 -38.25555 -38.05296 -35.94128 -35.21468 -33.34261 -32.56586 -30.88368 -27.47313 -26.82984 -25.60010 -25.31630 -24.53503 -23.05736 -21.02616 -20.55019 -20.27506 -18.66123 -16.95015 -16.78980 -16.27235 -15.77795 -15.60657 -14.89859 -14.79271 -14.60874 -14.25264 -14.18114 -13.82431 -13.69290 -13.03108 -12.69255 -12.55441 -12.34836 -12.17957 -12.10724 -11.52093 -11.20753 -11.11925 -11.07720 -11.00984 -10.96451 -10.69553 -10.63990 -10.28843 -10.25337 -10.12043 -9.98407 -9.59638 -9.40790 -8.85603 -8.73917 -8.53717 -8.27737 -5.93905 -4.04835 2.04861 2.49119 3.32132 3.33649 3.39701 3.43923 3.51080 4.26066 4.40224 4.45454 4.48943 4.67332 4.72751 4.89626 5.07435 5.22875 5.31947 5.35038 5.40783 5.54050 5.67095 5.75065 5.76878 5.85832 5.88706 5.99737 6.07674 6.18901 6.29835 6.33879 6.51156 6.68899 6.89179 7.02942 7.16731 7.18101 7.52121 7.63136 7.71806 7.76774 7.85089 8.15066 8.21531 8.46455 8.57638 8.94733 9.59830 11.06952 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.004636 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.512593 B = 6037.715289 C = 6339.681558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.054 3.946 3 C -0.120 4.120 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.893 3.107 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.127 3.873 13 N -0.567 5.567 14 C 0.522 3.478 15 O -0.468 6.468 16 C 0.094 3.906 17 H 0.114 0.886 18 C -0.121 4.121 19 C -0.115 4.115 20 C -0.125 4.125 21 C -0.133 4.133 22 C 0.157 3.843 23 N -0.631 5.631 24 C 0.703 3.297 25 O -0.537 6.537 26 H 0.083 0.917 27 H -0.001 1.001 28 H 0.028 0.972 29 H 0.030 0.970 30 H 0.000 1.000 31 H 0.080 0.920 32 H 0.259 0.741 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.291 4.154 -18.826 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.053 3.947 3 C -0.178 4.178 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.008 3.992 13 N -0.311 5.311 14 C 0.308 3.692 15 O -0.338 6.338 16 C -0.014 4.014 17 H 0.131 0.869 18 C -0.159 4.159 19 C -0.153 4.153 20 C -0.162 4.162 21 C -0.170 4.170 22 C 0.037 3.963 23 N -0.373 5.373 24 C 0.406 3.594 25 O -0.410 6.410 26 H 0.102 0.898 27 H 0.018 0.982 28 H 0.047 0.953 29 H 0.049 0.951 30 H 0.019 0.981 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.088 0.912 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.114 4.101 -18.326 19.035 hybrid contribution 0.360 -0.371 0.898 1.037 sum -2.754 3.729 -17.427 18.033 Atomic orbital electron populations 1.21785 0.97446 0.98315 1.00499 1.18465 0.93028 0.93086 0.90074 1.21717 0.98684 0.97888 0.99468 1.20938 1.33408 1.10139 0.89922 0.92490 1.24876 0.94787 0.95000 0.98786 1.69841 1.35607 1.23629 1.23082 0.86566 0.79532 0.79021 0.82788 1.20831 1.21230 1.19850 1.22218 0.99565 0.95492 0.81941 1.46850 1.20963 1.34683 1.28607 1.20733 0.81222 0.83245 0.83979 1.90767 1.40459 1.33922 1.68628 1.21803 0.88987 0.91957 0.98664 0.86908 1.22161 0.95054 1.00835 0.97875 1.21602 0.99718 0.98926 0.95016 1.20768 0.94322 0.99170 1.01962 1.21281 0.95949 1.03360 0.96454 1.21699 1.01471 0.83311 0.89862 1.48019 1.25777 1.26978 1.36505 1.15858 0.84257 0.79848 0.79403 1.90943 1.17980 1.63866 1.68247 0.89807 0.98203 0.95302 0.95129 0.98089 0.90150 0.93082 0.90046 0.90360 0.89322 0.89977 0.91318 0.90787 0.92116 0.91902 0.90964 0.90152 0.91231 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 7.12 37.16 0.26 -2.84 16 2 C 0.05 1.37 0.57 -155.66 -0.09 1.28 16 3 C -0.12 -3.08 7.22 37.15 0.27 -2.81 16 4 C -0.51 -13.78 8.01 -34.44 -0.28 -14.06 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 6 C 0.07 1.83 5.13 -17.82 -0.09 1.74 16 7 N -0.88 -24.81 9.34 55.43 0.52 -24.29 16 8 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.13 2.81 4.70 -4.04 -0.02 2.79 16 13 N -0.57 -11.07 2.15 -120.78 -0.26 -11.33 16 14 C 0.52 9.18 6.17 -10.54 -0.07 9.12 16 15 O -0.47 -9.28 16.55 5.59 0.09 -9.19 16 16 C 0.09 1.21 2.68 -69.40 -0.19 1.02 16 17 H 0.11 1.18 6.84 -51.93 -0.36 0.83 16 18 C -0.12 -1.30 5.35 -25.96 -0.14 -1.44 16 19 C -0.12 -0.86 5.88 -26.93 -0.16 -1.02 16 20 C -0.12 -0.84 5.05 -29.09 -0.15 -0.99 16 21 C -0.13 -0.96 5.28 -28.22 -0.15 -1.11 16 22 C 0.16 1.62 6.61 -3.27 -0.02 1.60 16 23 N -0.63 -8.85 3.06 -172.75 -0.53 -9.38 16 24 C 0.70 13.16 6.63 -88.10 -0.58 12.58 16 25 O -0.54 -11.67 16.50 5.34 0.09 -11.58 16 26 H 0.08 2.32 5.99 -51.93 -0.31 2.01 16 27 H 0.00 -0.03 6.69 -51.93 -0.35 -0.37 16 28 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.00 0.00 6.24 -51.93 -0.32 -0.32 16 31 H 0.08 2.24 6.04 -51.93 -0.31 1.92 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.08 1.81 7.86 -51.93 -0.41 1.40 16 34 H 0.08 1.69 8.04 -51.93 -0.42 1.28 16 35 H 0.09 1.03 7.83 -51.93 -0.41 0.62 16 36 H 0.08 0.95 7.72 -51.93 -0.40 0.55 16 37 H 0.07 0.47 7.55 -51.93 -0.39 0.08 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.06 0.45 7.48 -51.93 -0.39 0.06 16 41 H 0.07 0.55 7.18 -51.93 -0.37 0.17 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.70 7.73 -51.93 -0.40 0.30 16 44 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -31.50 332.73 -8.39 -39.89 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -6.90 Total: -1.32 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.39 Total: 5.88 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.27 Total: -45.00 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.18 Total: -20.77 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.50 -8.39 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591422554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.185 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds