Wall clock time and date at job start Tue Mar 31 2020 07:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.47217 * 2 1 4 4 C 1.50695 * 109.47210 * 120.00603 * 2 1 3 5 5 H 1.07998 * 120.00369 * 117.41897 * 4 2 1 6 6 C 1.37885 * 119.99763 * 297.41863 * 4 2 1 7 7 N 1.31517 * 119.99649 * 4.41926 * 6 4 2 8 8 Si 1.86794 * 119.99933 * 184.42037 * 6 4 2 9 9 H 1.48504 * 109.47242 * 265.05277 * 8 6 4 10 10 H 1.48501 * 109.47191 * 145.05240 * 8 6 4 11 11 H 1.48500 * 109.47247 * 25.04924 * 8 6 4 12 12 C 1.53003 * 109.46769 * 240.00307 * 2 1 3 13 13 N 1.46501 * 109.47289 * 60.00081 * 12 2 1 14 14 C 1.35153 * 124.21317 * 269.71982 * 13 12 2 15 15 O 1.21243 * 127.39829 * 2.71578 * 14 13 12 16 16 C 1.51259 * 105.21734 * 182.62043 * 14 13 12 17 17 H 1.09003 * 110.39974 * 110.70471 * 16 14 13 18 18 C 1.52533 * 111.49403 * 233.22459 * 16 14 13 19 19 C 1.54912 * 106.99219 * 208.04560 * 18 16 14 20 20 C 1.50579 * 107.62605 * 282.75595 * 19 18 16 21 21 C 1.50714 * 116.24665 * 65.40115 * 20 19 18 22 22 C 1.52321 * 112.36425 * 275.56579 * 21 20 19 23 23 N 1.45846 * 103.56244 * 353.02825 * 16 14 13 24 24 C 1.33933 * 107.19102 * 9.22283 * 23 16 14 25 25 O 1.21528 * 124.20275 * 171.58335 * 24 23 16 26 26 H 1.09000 * 109.46810 * 294.07943 * 1 2 3 27 27 H 1.08999 * 109.47030 * 54.08091 * 1 2 3 28 28 H 1.08998 * 109.47195 * 174.08228 * 1 2 3 29 29 H 1.08998 * 109.47676 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47487 * 300.00150 * 3 2 1 31 31 H 1.09004 * 109.47258 * 60.00363 * 3 2 1 32 32 H 0.97000 * 119.99426 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46970 * 180.02562 * 12 2 1 34 34 H 1.08999 * 109.47179 * 300.00002 * 12 2 1 35 35 H 1.08996 * 109.94564 * 327.41440 * 18 16 14 36 36 H 1.08996 * 109.94858 * 88.67571 * 18 16 14 37 37 H 1.09003 * 109.82854 * 42.28977 * 19 18 16 38 38 H 1.08996 * 109.82824 * 163.22628 * 19 18 16 39 39 H 1.08996 * 108.12912 * 187.16721 * 20 19 18 40 40 H 1.08999 * 108.12570 * 303.64760 * 20 19 18 41 41 H 1.08998 * 108.90268 * 36.31100 * 21 20 19 42 42 H 1.09000 * 108.90046 * 154.91564 * 21 20 19 43 43 H 1.09001 * 109.97441 * 322.57593 * 22 21 20 44 44 H 1.09000 * 109.97221 * 201.26243 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6185 -1.6123 1.1318 6 6 1.7437 -0.2093 2.4820 7 7 0.9583 0.8383 2.6057 8 14 2.4683 -1.0182 4.0019 9 1 1.4946 -1.9931 4.5556 10 1 2.7639 0.0199 5.0218 11 1 3.7225 -1.7244 3.6365 12 6 2.0400 -0.7212 -1.2493 13 7 1.5516 -0.0305 -2.4455 14 6 0.3883 -0.3211 -3.0691 15 8 -0.4424 -1.1383 -2.7344 16 6 0.3439 0.5936 -4.2729 17 1 0.4593 0.0184 -5.1916 18 6 -0.9540 1.3935 -4.3194 19 6 -1.2411 1.7044 -5.8096 20 6 -0.3321 2.8313 -6.2236 21 6 1.1448 2.5309 -6.2231 22 6 1.7720 2.7094 -4.8466 23 7 1.4976 1.4653 -4.0829 24 6 2.2069 0.9663 -3.0623 25 8 3.3068 1.3662 -2.7346 26 1 -0.3633 0.4193 0.9383 27 1 -0.3633 0.6029 -0.8322 28 1 -0.3633 -1.0222 -0.1059 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 0.7550 1.1907 3.4863 33 1 3.1300 -0.7216 -1.2491 34 1 1.6766 -1.7489 -1.2494 35 1 -1.7690 0.8047 -3.8987 36 1 -0.8384 2.3226 -3.7613 37 1 -1.0372 0.8227 -6.4172 38 1 -2.2817 2.0053 -5.9307 39 1 -0.6145 3.1429 -7.2292 40 1 -0.5072 3.6722 -5.5525 41 1 1.2959 1.5019 -6.5493 42 1 1.6415 3.2002 -6.9255 43 1 1.3224 3.5637 -4.3404 44 1 2.8476 2.8569 -4.9438 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591422554.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:24:34 Heat of formation + Delta-G solvation = -64.600157 kcal Electronic energy + Delta-G solvation = -25827.054421 eV Core-core repulsion = 22358.359798 eV Total energy + Delta-G solvation = -3468.694623 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.55814 -39.62992 -39.23805 -37.71303 -36.60289 -34.67841 -33.62078 -32.68641 -28.54711 -28.17567 -27.70334 -27.29345 -25.91847 -24.26026 -22.04666 -21.79245 -21.20371 -20.44863 -18.35580 -18.27903 -17.85077 -17.41571 -16.79733 -16.57997 -16.14167 -15.79063 -15.44734 -15.20908 -15.11928 -14.78024 -14.64989 -14.54176 -14.12715 -13.50327 -13.26538 -13.23010 -13.11359 -13.03293 -12.68651 -12.61101 -12.34325 -12.30694 -12.21853 -11.99133 -11.93225 -11.71556 -11.54449 -11.48562 -11.23382 -10.99870 -10.78397 -10.44441 -10.39442 -9.88783 -8.04122 -6.22026 0.65903 1.19136 1.42295 1.44150 1.54180 2.04526 2.10087 2.44771 3.04150 3.18829 3.59174 3.73770 3.94010 4.02541 4.04848 4.15600 4.32668 4.39686 4.49500 4.54460 4.58376 4.66551 4.69561 4.77331 4.89243 4.92103 4.97260 5.03431 5.09013 5.09722 5.21368 5.23969 5.31677 5.37862 5.41218 5.51742 5.54738 5.56997 5.61438 6.00205 6.09436 6.25617 6.35450 6.46320 6.82261 7.12562 7.45440 8.95486 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028521 B = 0.004636 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.512593 B = 6037.715289 C = 6339.681558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.048 3.952 3 C -0.099 4.099 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.023 3.977 7 N -0.905 5.905 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.269 1.269 12 C 0.137 3.863 13 N -0.578 5.578 14 C 0.512 3.488 15 O -0.495 6.495 16 C 0.105 3.895 17 H 0.150 0.850 18 C -0.119 4.119 19 C -0.107 4.107 20 C -0.125 4.125 21 C -0.124 4.124 22 C 0.147 3.853 23 N -0.617 5.617 24 C 0.695 3.305 25 O -0.576 6.576 26 H 0.058 0.942 27 H 0.006 0.994 28 H 0.021 0.979 29 H 0.016 0.984 30 H 0.006 0.994 31 H 0.057 0.943 32 H 0.260 0.740 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.059 0.941 41 H 0.075 0.925 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.875 4.519 -21.154 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.047 3.953 3 C -0.157 4.157 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.176 4.176 7 N -0.543 5.543 8 Si 0.780 3.220 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.194 1.194 12 C 0.016 3.984 13 N -0.322 5.322 14 C 0.301 3.699 15 O -0.367 6.367 16 C -0.002 4.002 17 H 0.167 0.833 18 C -0.157 4.157 19 C -0.144 4.144 20 C -0.163 4.163 21 C -0.162 4.162 22 C 0.029 3.971 23 N -0.357 5.357 24 C 0.397 3.603 25 O -0.453 6.453 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.025 0.975 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.123 0.877 43 H 0.092 0.908 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.729 4.489 -20.709 21.515 hybrid contribution 0.513 -0.457 1.594 1.736 sum -3.215 4.032 -19.115 19.799 Atomic orbital electron populations 1.21535 0.97556 0.97600 0.99303 1.18478 0.92818 0.92832 0.91196 1.21470 0.97465 0.98251 0.98464 1.21247 1.33734 1.10459 0.91085 0.92620 1.25597 0.95048 0.95562 1.01444 1.69965 1.36210 1.24517 1.23646 0.85606 0.78901 0.78155 0.79335 1.20307 1.20959 1.19393 1.21792 0.99057 0.95373 0.82137 1.46885 1.21989 1.35205 1.28166 1.21575 0.80007 0.83374 0.84937 1.90746 1.41004 1.35274 1.69670 1.22029 0.89594 0.91289 0.97283 0.83297 1.22202 0.93201 0.99650 1.00689 1.21612 1.00837 0.99883 0.92072 1.20771 0.93632 0.98658 1.03195 1.21272 0.96358 1.04237 0.94338 1.22100 1.01936 0.81715 0.91373 1.48284 1.24980 1.27555 1.34851 1.16076 0.84180 0.79705 0.80298 1.90909 1.19673 1.64997 1.69696 0.92271 0.97469 0.96012 0.96519 0.97470 0.92457 0.93062 0.90767 0.90330 0.90214 0.90988 0.89912 0.89388 0.89846 0.92274 0.90657 0.87659 0.90838 0.89493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.28 7.12 71.98 0.51 -4.77 16 2 C 0.05 2.47 0.57 -52.93 -0.03 2.44 16 3 C -0.10 -5.21 7.22 71.98 0.52 -4.69 16 4 C -0.53 -29.27 8.01 25.60 0.21 -29.06 16 5 H 0.06 3.03 7.75 -2.91 -0.02 3.01 16 6 C 0.02 1.27 5.13 84.66 0.43 1.70 16 7 N -0.90 -51.75 9.34 21.45 0.20 -51.55 16 8 Si 0.95 44.10 29.54 68.60 2.03 46.12 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 C 0.14 6.22 4.70 86.38 0.41 6.63 16 13 N -0.58 -22.74 2.15 -772.77 -1.66 -24.41 16 14 C 0.51 17.76 6.17 87.78 0.54 18.30 16 15 O -0.50 -19.60 16.55 -2.91 -0.05 -19.64 16 16 C 0.10 2.47 2.68 44.39 0.12 2.59 16 17 H 0.15 2.56 6.84 -2.39 -0.02 2.55 16 18 C -0.12 -2.29 5.35 31.09 0.17 -2.12 16 19 C -0.11 -1.16 5.88 30.46 0.18 -0.98 16 20 C -0.13 -1.15 5.05 29.07 0.15 -1.00 16 21 C -0.12 -1.30 5.28 29.63 0.16 -1.14 16 22 C 0.15 2.72 6.61 85.76 0.57 3.29 16 23 N -0.62 -16.35 3.06 -819.21 -2.51 -18.86 16 24 C 0.69 25.94 6.63 179.47 1.19 27.13 16 25 O -0.58 -25.45 16.50 -3.80 -0.06 -25.51 16 26 H 0.06 3.35 5.99 -2.39 -0.01 3.34 16 27 H 0.01 0.31 6.69 -2.39 -0.02 0.30 16 28 H 0.02 1.10 7.92 -2.39 -0.02 1.08 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.01 0.32 6.24 -2.39 -0.01 0.31 16 31 H 0.06 3.28 6.04 -2.39 -0.01 3.26 16 32 H 0.26 14.21 8.31 -92.71 -0.77 13.43 16 33 H 0.07 3.42 7.86 -2.39 -0.02 3.40 16 34 H 0.08 3.49 8.04 -2.39 -0.02 3.47 16 35 H 0.08 1.72 7.83 -2.39 -0.02 1.70 16 36 H 0.07 1.54 7.72 -2.39 -0.02 1.53 16 37 H 0.08 0.72 7.55 -2.39 -0.02 0.70 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.06 0.62 7.48 -2.39 -0.02 0.61 16 41 H 0.07 0.80 7.18 -2.39 -0.02 0.78 16 42 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 1.33 7.73 -2.39 -0.02 1.31 16 44 H 0.09 1.69 8.13 -2.39 -0.02 1.67 16 Total: -1.00 -69.93 332.73 4.05 -65.88 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.99 Total: 9.65 kcal Atomic # 6 Polarization: 13.20 SS G_CDS: 5.11 Total: 18.31 kcal Atomic # 7 Polarization: -90.84 SS G_CDS: -3.97 Total: -94.82 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -0.11 Total: -45.15 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.93 4.05 -65.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591422554.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.284 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds