Wall clock time and date at job start Tue Mar 31 2020 06:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46836 * 2 1 4 4 C 1.50703 * 109.46911 * 179.97438 * 3 2 1 5 5 N 1.34655 * 125.80572 * 264.98121 * 4 3 2 6 6 H 0.96998 * 124.84646 * 0.03650 * 5 4 3 7 7 C 1.36440 * 110.29896 * 180.02562 * 5 4 3 8 8 C 1.34488 * 108.85660 * 0.23113 * 7 5 4 9 9 C 1.36765 * 125.79679 * 85.00336 * 4 3 2 10 10 C 1.47270 * 126.94499 * 359.97438 * 9 4 3 11 11 O 1.21625 * 119.99583 * 52.97059 * 10 9 4 12 12 N 1.34775 * 120.00076 * 232.97108 * 10 9 4 13 13 C 1.46499 * 120.00096 * 185.88010 * 12 10 9 14 14 C 1.50701 * 109.46914 * 89.99951 * 13 12 10 15 15 H 1.08001 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99746 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47655 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47209 * 119.99867 * 18 16 14 21 21 H 1.48502 * 109.47124 * 239.99750 * 18 16 14 22 22 C 1.46501 * 119.99996 * 5.88426 * 12 10 9 23 23 C 1.52998 * 109.47280 * 94.51171 * 22 12 10 24 24 O 1.42890 * 109.47495 * 64.99608 * 23 22 12 25 25 C 1.42897 * 114.00548 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47235 * 59.99594 * 1 2 3 27 27 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46905 * 299.99607 * 1 2 3 29 29 H 1.08995 * 109.46939 * 240.00586 * 2 1 3 30 30 H 1.08996 * 109.47084 * 119.99873 * 2 1 3 31 31 H 1.09005 * 109.47053 * 60.00483 * 3 2 1 32 32 H 1.08996 * 109.47540 * 300.00219 * 3 2 1 33 33 H 1.08001 * 125.57460 * 179.97438 * 7 5 4 34 34 H 1.07996 * 126.83168 * 179.75639 * 8 7 5 35 35 H 1.09000 * 109.47617 * 210.00428 * 13 12 10 36 36 H 1.09005 * 109.47203 * 330.00454 * 13 12 10 37 37 H 0.96998 * 120.00148 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46802 * 214.50755 * 22 12 10 39 39 H 1.08997 * 109.47154 * 334.50594 * 22 12 10 40 40 H 1.08996 * 109.47132 * 185.00039 * 23 22 12 41 41 H 1.09004 * 109.47161 * 304.99660 * 23 22 12 42 42 H 1.09002 * 109.47482 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.47098 * 300.00693 * 25 24 23 44 44 H 1.09005 * 109.46797 * 60.00423 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.3343 1.5383 1.0888 6 1 4.0126 1.6180 2.0004 7 6 5.6492 1.5069 0.7260 8 6 5.7284 1.3947 -0.6119 9 6 4.3474 1.3458 -1.1041 10 6 3.9111 1.2226 -2.5053 11 8 3.1248 2.0256 -2.9701 12 7 4.3831 0.2200 -3.2723 13 6 4.0518 0.1705 -4.6985 14 6 5.0948 0.9240 -5.4829 15 1 5.9220 1.3926 -4.9704 16 6 4.9930 1.0153 -6.8550 17 7 3.9860 0.4444 -7.4791 18 14 6.2862 1.9488 -7.8273 19 1 7.3075 2.4936 -6.8971 20 1 6.9375 1.0294 -8.7948 21 1 5.6415 3.0660 -8.5632 22 6 5.2274 -0.8205 -2.6800 23 6 4.3589 -2.0134 -2.2759 24 8 3.7914 -2.6073 -3.4451 25 6 2.9583 -3.7370 -3.1774 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 6.4892 1.5669 1.4021 34 1 6.6294 1.3480 -1.2055 35 1 4.0273 -0.8676 -5.0301 36 1 3.0752 0.6268 -4.8607 37 1 3.9146 0.5083 -8.4443 38 1 5.9714 -1.1430 -3.4084 39 1 5.7304 -0.4222 -1.7988 40 1 4.9718 -2.7493 -1.7555 41 1 3.5599 -1.6744 -1.6164 42 1 2.5662 -4.1298 -4.1155 43 1 3.5425 -4.5086 -2.6759 44 1 2.1303 -3.4341 -2.5365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591529275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:10 Heat of formation + Delta-G solvation = -44.470889 kcal Electronic energy + Delta-G solvation = -24941.603385 eV Core-core repulsion = 21473.781632 eV Total energy + Delta-G solvation = -3467.821753 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.07275 -38.45291 -37.25151 -35.01317 -34.49011 -32.55248 -30.79254 -29.83981 -29.36088 -27.10320 -25.96761 -25.62789 -23.28823 -22.56593 -21.59832 -20.69396 -20.48346 -17.78876 -17.41180 -16.27318 -16.22172 -15.72092 -15.23811 -15.12199 -14.76381 -14.47216 -14.29976 -14.02488 -13.90244 -13.60152 -13.09825 -12.89595 -12.63038 -12.52525 -12.02670 -11.78595 -11.74529 -11.63968 -11.46000 -11.21865 -11.15095 -11.10202 -10.79296 -10.71395 -10.62642 -10.25668 -9.99660 -9.41390 -9.28558 -8.83047 -8.47222 -8.24424 -7.94334 -7.37940 -5.85949 -3.89303 2.27298 2.75066 3.31336 3.40392 3.47235 3.51974 3.88309 4.19565 4.31200 4.61075 4.79673 4.94315 5.07884 5.13720 5.38769 5.39047 5.43385 5.48153 5.50673 5.57094 5.63797 5.70359 5.75664 5.78732 5.84663 5.85282 5.91091 6.00271 6.07023 6.11015 6.24204 6.30406 6.37374 6.46323 6.99605 7.14615 7.50255 7.56030 7.61814 7.74390 7.81913 8.14297 8.46330 8.72365 9.11053 9.36356 9.74504 11.21931 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013284 B = 0.005498 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.233170 B = 5091.631130 C = 5795.300046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.059 4.059 4 C 0.073 3.927 5 N -0.557 5.557 6 H 0.410 0.590 7 C -0.021 4.021 8 C -0.170 4.170 9 C -0.202 4.202 10 C 0.579 3.421 11 O -0.547 6.547 12 N -0.582 5.582 13 C 0.248 3.752 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.060 3.940 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.109 3.891 23 C 0.048 3.952 24 O -0.369 6.369 25 C 0.033 3.967 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.165 0.835 34 H 0.144 0.856 35 H 0.048 0.952 36 H 0.039 0.961 37 H 0.260 0.740 38 H 0.084 0.916 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.043 0.957 42 H 0.083 0.917 43 H 0.033 0.967 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -5.238 20.316 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.097 4.097 4 C -0.042 4.042 5 N -0.152 5.152 6 H 0.245 0.755 7 C -0.149 4.149 8 C -0.194 4.194 9 C -0.212 4.212 10 C 0.366 3.634 11 O -0.426 6.426 12 N -0.312 5.312 13 C 0.129 3.871 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.141 4.141 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.016 4.016 23 C -0.030 4.030 24 O -0.288 6.288 25 C -0.064 4.064 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.118 0.882 33 H 0.182 0.818 34 H 0.162 0.838 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.101 0.899 43 H 0.051 0.949 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.260 -4.772 19.782 20.388 hybrid contribution 0.729 0.347 0.120 0.816 sum -0.531 -4.425 19.902 20.395 Atomic orbital electron populations 1.21761 0.95436 1.01672 1.01981 1.21501 0.95942 0.95881 1.02156 1.20314 0.87395 0.97972 1.03998 1.20087 0.92946 1.05351 0.85863 1.41438 1.06078 1.59371 1.08349 0.75457 1.21607 0.85544 1.11372 0.96385 1.22003 0.95943 1.08189 0.93304 1.20522 0.93207 1.14232 0.93248 1.17377 0.80820 0.81367 0.83833 1.90724 1.35352 1.42315 1.74167 1.48008 1.48680 1.22937 1.11593 1.19323 0.96813 0.98270 0.72741 1.21554 1.09433 1.33339 0.91719 0.92628 1.24907 0.95831 0.95789 0.97606 1.69962 1.30158 1.44503 1.08775 0.86507 0.81660 0.79664 0.79943 1.19885 1.21115 1.21064 1.21626 0.93126 0.87000 0.99813 1.23088 0.96601 0.95210 0.88094 1.88125 1.65238 1.44991 1.30414 1.22678 0.93584 0.88522 1.01658 0.92105 0.92716 0.92992 0.91355 0.92555 0.91473 0.88238 0.81785 0.83787 0.93399 0.94309 0.93044 0.89788 0.88885 0.93572 0.93835 0.89863 0.94887 0.94777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.91 37.16 0.37 -1.22 16 2 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 3 C -0.06 -0.76 5.52 -27.88 -0.15 -0.92 16 4 C 0.07 1.04 6.43 -81.89 -0.53 0.52 16 5 N -0.56 -5.92 5.90 -9.11 -0.05 -5.98 16 6 H 0.41 2.86 8.96 -40.82 -0.37 2.49 16 7 C -0.02 -0.23 11.89 -16.83 -0.20 -0.43 16 8 C -0.17 -2.48 8.98 -37.50 -0.34 -2.82 16 9 C -0.20 -3.58 5.14 -103.35 -0.53 -4.11 16 10 C 0.58 13.22 7.28 -12.59 -0.09 13.13 16 11 O -0.55 -14.77 15.91 5.26 0.08 -14.68 16 12 N -0.58 -13.32 2.44 -176.39 -0.43 -13.76 16 13 C 0.25 6.91 5.02 -5.19 -0.03 6.88 16 14 C -0.52 -15.53 9.39 -34.44 -0.32 -15.86 16 15 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -27.74 13.29 55.43 0.74 -27.01 16 18 Si 0.89 22.73 29.54 -169.99 -5.02 17.71 16 19 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 20 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 22 C 0.11 1.97 5.80 -4.04 -0.02 1.95 16 23 C 0.05 0.77 6.28 37.16 0.23 1.00 16 24 O -0.37 -6.84 9.12 -35.23 -0.32 -7.16 16 25 C 0.03 0.45 11.01 101.05 1.11 1.56 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.99 7.23 -51.93 -0.38 0.62 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 1.61 7.35 -51.93 -0.38 1.23 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.14 2.04 7.83 -52.49 -0.41 1.63 16 35 H 0.05 1.38 6.71 -51.93 -0.35 1.04 16 36 H 0.04 1.22 7.35 -51.93 -0.38 0.84 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 39 H 0.09 1.45 4.66 -51.93 -0.24 1.21 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.68 7.23 -51.93 -0.38 0.31 16 42 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 364.43 15.07 5.49 5.49 Total: -1.00 -36.70 364.43 -7.34 -44.05 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.07 Total: 1.52 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.75 Total: -0.18 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: 0.25 Total: -46.74 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.24 Total: -21.84 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.70 -7.34 -44.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591529275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.425 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds