Wall clock time and date at job start Tue Mar 31 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46836 * 2 1 4 4 C 1.50703 * 109.46911 * 179.97438 * 3 2 1 5 5 N 1.34655 * 125.80572 * 264.98121 * 4 3 2 6 6 H 0.96998 * 124.84646 * 0.03650 * 5 4 3 7 7 C 1.36440 * 110.29896 * 180.02562 * 5 4 3 8 8 C 1.34488 * 108.85660 * 0.23113 * 7 5 4 9 9 C 1.36765 * 125.79679 * 85.00336 * 4 3 2 10 10 C 1.47270 * 126.94499 * 359.97438 * 9 4 3 11 11 O 1.21625 * 119.99583 * 52.97059 * 10 9 4 12 12 N 1.34775 * 120.00076 * 232.97108 * 10 9 4 13 13 C 1.46499 * 120.00096 * 185.88010 * 12 10 9 14 14 C 1.50701 * 109.46914 * 89.99951 * 13 12 10 15 15 H 1.08001 * 120.00089 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99837 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00066 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99746 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47655 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47209 * 119.99867 * 18 16 14 21 21 H 1.48502 * 109.47124 * 239.99750 * 18 16 14 22 22 C 1.46501 * 119.99996 * 5.88426 * 12 10 9 23 23 C 1.52998 * 109.47280 * 94.51171 * 22 12 10 24 24 O 1.42890 * 109.47495 * 64.99608 * 23 22 12 25 25 C 1.42897 * 114.00548 * 179.97438 * 24 23 22 26 26 H 1.08996 * 109.47235 * 59.99594 * 1 2 3 27 27 H 1.09003 * 109.47441 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46905 * 299.99607 * 1 2 3 29 29 H 1.08995 * 109.46939 * 240.00586 * 2 1 3 30 30 H 1.08996 * 109.47084 * 119.99873 * 2 1 3 31 31 H 1.09005 * 109.47053 * 60.00483 * 3 2 1 32 32 H 1.08996 * 109.47540 * 300.00219 * 3 2 1 33 33 H 1.08001 * 125.57460 * 179.97438 * 7 5 4 34 34 H 1.07996 * 126.83168 * 179.75639 * 8 7 5 35 35 H 1.09000 * 109.47617 * 210.00428 * 13 12 10 36 36 H 1.09005 * 109.47203 * 330.00454 * 13 12 10 37 37 H 0.96998 * 120.00148 * 180.02562 * 17 16 14 38 38 H 1.09001 * 109.46802 * 214.50755 * 22 12 10 39 39 H 1.08997 * 109.47154 * 334.50594 * 22 12 10 40 40 H 1.08996 * 109.47132 * 185.00039 * 23 22 12 41 41 H 1.09004 * 109.47161 * 304.99660 * 23 22 12 42 42 H 1.09002 * 109.47482 * 179.97438 * 25 24 23 43 43 H 1.08999 * 109.47098 * 300.00693 * 25 24 23 44 44 H 1.09005 * 109.46797 * 60.00423 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.3343 1.5383 1.0888 6 1 4.0126 1.6180 2.0004 7 6 5.6492 1.5069 0.7260 8 6 5.7284 1.3947 -0.6119 9 6 4.3474 1.3458 -1.1041 10 6 3.9111 1.2226 -2.5053 11 8 3.1248 2.0256 -2.9701 12 7 4.3831 0.2200 -3.2723 13 6 4.0518 0.1705 -4.6985 14 6 5.0948 0.9240 -5.4829 15 1 5.9220 1.3926 -4.9704 16 6 4.9930 1.0153 -6.8550 17 7 3.9860 0.4444 -7.4791 18 14 6.2862 1.9488 -7.8273 19 1 7.3075 2.4936 -6.8971 20 1 6.9375 1.0294 -8.7948 21 1 5.6415 3.0660 -8.5632 22 6 5.2274 -0.8205 -2.6800 23 6 4.3589 -2.0134 -2.2759 24 8 3.7914 -2.6073 -3.4451 25 6 2.9583 -3.7370 -3.1774 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8901 32 1 1.6766 1.9564 -0.8899 33 1 6.4892 1.5669 1.4021 34 1 6.6294 1.3480 -1.2055 35 1 4.0273 -0.8676 -5.0301 36 1 3.0752 0.6268 -4.8607 37 1 3.9146 0.5083 -8.4443 38 1 5.9714 -1.1430 -3.4084 39 1 5.7304 -0.4222 -1.7988 40 1 4.9718 -2.7493 -1.7555 41 1 3.5599 -1.6744 -1.6164 42 1 2.5662 -4.1298 -4.1155 43 1 3.5425 -4.5086 -2.6759 44 1 2.1303 -3.4341 -2.5365 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591529275.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:09 Heat of formation + Delta-G solvation = -70.321886 kcal Electronic energy + Delta-G solvation = -24942.724368 eV Core-core repulsion = 21473.781632 eV Total energy + Delta-G solvation = -3468.942736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.18724 -40.11550 -38.68559 -36.46157 -35.86165 -34.75893 -32.06564 -30.95388 -30.84801 -28.99238 -27.12936 -26.90828 -25.18870 -24.06790 -22.65609 -22.14168 -21.56877 -19.27607 -18.64009 -18.44103 -17.64229 -17.17255 -16.82958 -16.57235 -16.16859 -15.89106 -15.79120 -15.39090 -15.06378 -14.85162 -14.45617 -14.15011 -14.06395 -13.81506 -13.51327 -13.46856 -13.21601 -12.99769 -12.80446 -12.73025 -12.69186 -12.54072 -12.24002 -12.16277 -12.11440 -11.93104 -11.64403 -11.60694 -10.68395 -10.60930 -10.49909 -9.64408 -9.28388 -9.01881 -8.16325 -6.31783 1.07183 1.36214 1.39332 1.51625 1.64546 2.22879 2.33233 2.43024 2.69658 3.00912 3.12369 3.79023 3.96254 4.00725 4.13427 4.20140 4.34462 4.35837 4.44388 4.49155 4.52709 4.58212 4.59876 4.60793 4.72639 4.79709 4.84574 4.92417 4.97148 5.07221 5.12732 5.20000 5.27650 5.32683 5.37317 5.38573 5.63819 5.85509 5.95975 6.10246 6.15062 6.35915 6.77088 6.80479 6.94948 7.33130 7.60620 8.90806 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.013284 B = 0.005498 C = 0.004830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2107.233170 B = 5091.631130 C = 5795.300046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.059 4.059 4 C 0.083 3.917 5 N -0.533 5.533 6 H 0.434 0.566 7 C 0.020 3.980 8 C -0.202 4.202 9 C -0.247 4.247 10 C 0.573 3.427 11 O -0.609 6.609 12 N -0.588 5.588 13 C 0.271 3.729 14 C -0.542 4.542 15 H 0.051 0.949 16 C 0.005 3.995 17 N -0.929 5.929 18 Si 0.970 3.030 19 H -0.266 1.266 20 H -0.267 1.267 21 H -0.281 1.281 22 C 0.106 3.894 23 C 0.053 3.947 24 O -0.415 6.415 25 C 0.028 3.972 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.216 0.784 34 H 0.142 0.858 35 H 0.031 0.969 36 H -0.015 1.015 37 H 0.266 0.734 38 H 0.069 0.931 39 H 0.123 0.877 40 H 0.087 0.913 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.063 0.937 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.126 -5.593 23.993 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.097 4.097 4 C -0.035 4.035 5 N -0.130 5.130 6 H 0.275 0.725 7 C -0.108 4.108 8 C -0.226 4.226 9 C -0.257 4.257 10 C 0.364 3.636 11 O -0.492 6.492 12 N -0.316 5.316 13 C 0.149 3.851 14 C -0.581 4.581 15 H 0.069 0.931 16 C -0.193 4.193 17 N -0.569 5.569 18 Si 0.794 3.206 19 H -0.190 1.190 20 H -0.192 1.192 21 H -0.206 1.206 22 C -0.017 4.017 23 C -0.024 4.024 24 O -0.335 6.335 25 C -0.068 4.068 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.123 0.877 32 H 0.074 0.926 33 H 0.233 0.767 34 H 0.160 0.840 35 H 0.049 0.951 36 H 0.004 0.996 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.141 0.859 40 H 0.105 0.895 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.673 -5.167 23.528 24.098 hybrid contribution 0.080 0.432 -0.949 1.046 sum 0.753 -4.736 22.578 23.082 Atomic orbital electron populations 1.21754 0.94474 1.02376 1.02046 1.21442 0.96782 0.94920 1.01674 1.20310 0.86977 0.98708 1.03696 1.20050 0.93384 1.03908 0.86127 1.41396 1.05653 1.57313 1.08608 0.72537 1.22226 0.86486 1.06700 0.95417 1.22065 0.94285 1.11133 0.95126 1.20178 0.95886 1.18764 0.90855 1.18209 0.79491 0.79985 0.85953 1.90664 1.38165 1.44386 1.75965 1.47960 1.49358 1.24515 1.09816 1.18659 0.93993 0.96219 0.76206 1.21795 1.09689 1.34022 0.92603 0.93115 1.25903 0.98234 0.96530 0.98679 1.70096 1.31994 1.45445 1.09399 0.85333 0.78643 0.78271 0.78320 1.19046 1.19246 1.20640 1.21909 0.92788 0.86802 1.00174 1.23072 0.96750 0.95080 0.87479 1.88061 1.66288 1.46798 1.32330 1.22848 0.93797 0.87931 1.02192 0.94495 0.91716 0.90451 0.94997 0.89641 0.87677 0.92551 0.76738 0.84040 0.95128 0.99642 0.92536 0.91214 0.85887 0.89478 0.93776 0.90045 0.91867 0.94020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.91 71.98 0.71 -2.31 16 2 C -0.11 -2.54 5.92 30.60 0.18 -2.36 16 3 C -0.06 -1.49 5.52 29.85 0.16 -1.33 16 4 C 0.08 2.24 6.43 41.78 0.27 2.51 16 5 N -0.53 -8.93 5.90 -182.73 -1.08 -10.01 16 6 H 0.43 3.48 8.96 -92.71 -0.83 2.65 16 7 C 0.02 0.35 11.89 83.12 0.99 1.34 16 8 C -0.20 -5.53 8.98 23.62 0.21 -5.32 16 9 C -0.25 -8.82 5.14 -19.04 -0.10 -8.92 16 10 C 0.57 28.04 7.28 86.62 0.63 28.67 16 11 O -0.61 -35.99 15.91 -4.11 -0.07 -36.05 16 12 N -0.59 -28.81 2.44 -830.21 -2.03 -30.84 16 13 C 0.27 16.38 5.02 85.63 0.43 16.81 16 14 C -0.54 -34.12 9.39 25.60 0.24 -33.88 16 15 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 16 C 0.00 0.30 5.46 84.66 0.46 0.77 16 17 N -0.93 -60.16 13.29 21.45 0.28 -59.87 16 18 Si 0.97 47.78 29.54 68.60 2.03 49.80 16 19 H -0.27 -12.66 7.11 99.48 0.71 -11.96 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 22 C 0.11 3.95 5.80 86.38 0.50 4.46 16 23 C 0.05 1.70 6.28 71.98 0.45 2.15 16 24 O -0.42 -15.91 9.12 -148.98 -1.36 -17.27 16 25 C 0.03 0.79 11.01 113.37 1.25 2.03 16 26 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.03 0.96 7.23 -2.39 -0.02 0.94 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.06 1.95 7.35 -2.39 -0.02 1.94 16 33 H 0.22 1.58 8.06 -2.91 -0.02 1.56 16 34 H 0.14 3.85 7.83 -2.91 -0.02 3.82 16 35 H 0.03 1.93 6.71 -2.39 -0.02 1.91 16 36 H -0.01 -1.02 7.35 -2.38 -0.02 -1.04 16 37 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.07 2.75 8.11 -2.39 -0.02 2.74 16 39 H 0.12 3.80 4.66 -2.39 -0.01 3.79 16 40 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.39 7.23 -2.39 -0.02 1.38 16 42 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -89.40 364.43 4.34 -85.07 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.16 Total: 14.55 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 6.40 Total: 4.62 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -2.82 Total: -100.72 kcal Atomic # 8 Polarization: -51.90 SS G_CDS: -1.42 Total: -53.32 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.03 Total: 49.80 kcal Total: -89.40 4.34 -85.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591529275.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.744 kcal (2) G-P(sol) polarization free energy of solvation -89.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds