Wall clock time and date at job start Tue Mar 31 2020 06:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47278 * 2 1 4 4 C 1.52998 * 109.46875 * 240.00165 * 2 1 3 5 5 C 1.50700 * 109.47321 * 120.00064 * 2 1 3 6 6 C 1.34327 * 126.43953 * 59.99485 * 5 2 1 7 7 N 1.34479 * 107.66728 * 179.76642 * 6 5 2 8 8 C 1.30257 * 108.69789 * 0.43022 * 7 6 5 9 9 C 1.50700 * 125.61655 * 179.83853 * 8 7 6 10 10 N 1.46897 * 109.47366 * 89.69059 * 9 8 7 11 11 C 1.47899 * 111.00068 * 69.87158 * 10 9 8 12 12 C 1.53997 * 107.05889 * 145.84368 * 11 10 9 13 13 C 1.54593 * 105.13807 * 358.77516 * 12 11 10 14 14 O 1.42904 * 110.72258 * 96.40366 * 13 12 11 15 15 C 1.50705 * 110.72583 * 219.68092 * 13 12 11 16 16 H 1.07993 * 119.99953 * 118.54560 * 15 13 12 17 17 C 1.37878 * 119.99835 * 298.55374 * 15 13 12 18 18 N 1.31514 * 120.00255 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99873 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47393 * 89.99416 * 19 17 15 21 21 H 1.48494 * 109.47178 * 209.99665 * 19 17 15 22 22 H 1.48501 * 109.47020 * 329.99469 * 19 17 15 23 23 C 1.48538 * 111.00123 * 187.27000 * 10 9 8 24 24 O 1.33965 * 108.76254 * 359.57208 * 8 7 6 25 25 H 1.08998 * 109.46708 * 299.99925 * 1 2 3 26 26 H 1.09006 * 109.46954 * 59.99368 * 1 2 3 27 27 H 1.08994 * 109.47268 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47072 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.46748 * 300.00328 * 3 2 1 30 30 H 1.08998 * 109.46973 * 59.99864 * 3 2 1 31 31 H 1.09000 * 109.47421 * 299.99914 * 4 2 1 32 32 H 1.08998 * 109.47433 * 60.00034 * 4 2 1 33 33 H 1.09002 * 109.47120 * 179.97438 * 4 2 1 34 34 H 1.08000 * 126.16632 * 0.02810 * 6 5 2 35 35 H 1.09001 * 109.47393 * 329.68966 * 9 8 7 36 36 H 1.09004 * 109.46904 * 209.68705 * 9 8 7 37 37 H 1.09004 * 109.91646 * 26.49394 * 11 10 9 38 38 H 1.08998 * 109.92144 * 265.19786 * 11 10 9 39 39 H 1.09004 * 110.30998 * 117.69119 * 12 11 10 40 40 H 1.08998 * 110.30811 * 239.85930 * 12 11 10 41 41 H 0.96700 * 114.00523 * 61.45046 * 14 13 12 42 42 H 0.96994 * 120.00103 * 180.02562 * 18 17 15 43 43 H 1.09007 * 110.66246 * 318.71191 * 23 10 9 44 44 H 1.08993 * 110.66671 * 81.67342 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.7889 -1.9870 1.5700 7 7 2.4217 -2.2281 2.7319 8 6 3.0302 -1.1402 3.1095 9 6 3.8523 -0.9844 4.3629 10 7 5.2505 -1.3334 4.0781 11 6 5.8842 -0.3174 3.2100 12 6 7.3608 -0.2174 3.6354 13 6 7.5106 -1.2107 4.8104 14 8 8.0160 -2.4657 4.3503 15 6 8.3999 -0.6373 5.8835 16 1 8.0091 -0.4699 6.8763 17 6 9.7124 -0.3263 5.5978 18 7 10.1885 -0.5305 4.3889 19 14 10.8145 0.3852 6.9277 20 1 11.4937 -0.7195 7.6512 21 1 11.8327 1.2695 6.3061 22 1 9.9932 1.1712 7.8831 23 6 6.0570 -1.3605 5.3251 24 8 2.8098 -0.1843 2.1972 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.1957 -2.6938 1.0087 35 1 3.4632 -1.6456 5.1372 36 1 3.7985 0.0487 4.7066 37 1 5.3925 0.6459 3.3460 38 1 5.8184 -0.6269 2.1670 39 1 8.0125 -0.5058 2.8107 40 1 7.5918 0.7957 3.9647 41 1 8.8933 -2.4125 3.9470 42 1 11.1119 -0.3120 4.1880 43 1 5.7906 -0.5259 5.9737 44 1 5.9267 -2.3084 5.8471 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148424.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:52 Heat of formation + Delta-G solvation = -54.262504 kcal Electronic energy + Delta-G solvation = -24365.726767 eV Core-core repulsion = 20897.480418 eV Total energy + Delta-G solvation = -3468.246349 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.36897 -40.13051 -38.01593 -36.70211 -35.73391 -34.16427 -32.73054 -30.22630 -29.80391 -28.34282 -28.19900 -27.38812 -25.79670 -23.71952 -22.88349 -21.66640 -21.37447 -20.60699 -19.04300 -17.96465 -17.81604 -17.12383 -16.80807 -16.35908 -15.94233 -15.77278 -15.48717 -14.97124 -14.88076 -14.60598 -14.34624 -14.18956 -14.03230 -13.30798 -13.21090 -13.16655 -13.12172 -12.95450 -12.82465 -12.64618 -12.57668 -12.47216 -12.39013 -12.24864 -12.16605 -12.02450 -11.91539 -11.70075 -11.38745 -11.10918 -10.60311 -10.12415 -9.69093 -9.38933 -8.20505 -6.36622 0.42588 1.42177 1.44430 1.53283 1.59624 1.70673 2.39442 2.97116 3.03577 3.18055 3.56791 3.80754 3.90236 3.92516 3.97716 4.02219 4.12924 4.21358 4.30329 4.37639 4.47517 4.63699 4.67727 4.71593 4.74885 4.80204 4.81446 4.84920 4.94196 5.00638 5.05036 5.08029 5.16944 5.23533 5.30747 5.34659 5.37226 5.43546 5.54977 5.69553 5.83799 5.99751 6.20530 6.70003 6.78062 7.35239 7.46985 8.85230 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029873 B = 0.003372 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.062858 B = 8302.022072 C = 8597.251872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.018 3.982 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.036 4.036 6 C -0.056 4.056 7 N -0.495 5.495 8 C 0.189 3.811 9 C 0.141 3.859 10 N -0.520 5.520 11 C 0.050 3.950 12 C -0.117 4.117 13 C 0.239 3.761 14 O -0.590 6.590 15 C -0.560 4.560 16 H 0.061 0.939 17 C 0.029 3.971 18 N -0.913 5.913 19 Si 0.961 3.039 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.267 1.267 23 C 0.064 3.936 24 O -0.207 6.207 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.042 0.958 34 H 0.203 0.797 35 H 0.125 0.875 36 H 0.079 0.921 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.051 0.949 41 H 0.371 0.629 42 H 0.268 0.732 43 H 0.066 0.934 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.309 4.320 -9.418 21.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.090 4.090 6 C -0.194 4.194 7 N -0.225 5.225 8 C -0.018 4.018 9 C 0.013 3.987 10 N -0.246 5.246 11 C -0.078 4.078 12 C -0.156 4.156 13 C 0.199 3.801 14 O -0.398 6.398 15 C -0.598 4.598 16 H 0.079 0.921 17 C -0.172 4.172 18 N -0.552 5.552 19 Si 0.787 3.213 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.192 1.192 23 C -0.063 4.063 24 O -0.094 6.094 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.220 0.780 35 H 0.143 0.857 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.219 0.781 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.725 3.112 -9.195 21.092 hybrid contribution 1.623 1.710 0.409 2.393 sum -17.103 4.822 -8.786 19.823 Atomic orbital electron populations 1.21921 0.90436 1.03436 1.03380 1.19357 0.97086 0.94934 0.86858 1.21879 1.00780 0.94199 1.03260 1.21949 1.00772 1.01117 0.95741 1.24123 0.96845 0.94994 0.92992 1.23391 1.04756 0.96227 0.95011 1.70407 1.11772 1.26459 1.13849 1.26140 0.99712 0.81893 0.94082 1.20662 0.87060 1.02733 0.88268 1.64697 1.00333 1.45354 1.14180 1.22780 0.95293 0.92950 0.96784 1.22723 0.93316 1.00253 0.99334 1.19606 0.89596 0.80787 0.90105 1.86151 1.37833 1.34104 1.81672 1.21865 0.96999 1.43130 0.97821 0.92093 1.25721 0.99137 0.94842 0.97513 1.69836 1.16143 1.48589 1.20622 0.85514 0.78363 0.78231 0.79232 1.20404 1.20802 1.19174 1.23086 0.91964 1.01023 0.90244 1.84389 1.54312 1.41837 1.28813 0.92895 0.88918 0.91234 0.93769 0.89126 0.92858 0.91261 0.88760 0.93833 0.78046 0.85665 0.90307 0.93182 0.92799 0.93681 0.93053 0.78064 0.92277 0.91631 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 8.35 71.98 0.60 -1.03 16 2 C 0.02 0.31 0.93 -52.93 -0.05 0.26 16 3 C -0.14 -2.46 8.06 71.98 0.58 -1.88 16 4 C -0.14 -2.02 8.35 71.98 0.60 -1.42 16 5 C -0.04 -0.93 5.70 24.79 0.14 -0.78 16 6 C -0.06 -1.50 11.24 83.39 0.94 -0.57 16 7 N -0.49 -16.85 11.29 -303.83 -3.43 -20.28 16 8 C 0.19 6.28 7.35 88.34 0.65 6.93 16 9 C 0.14 4.52 5.39 85.56 0.46 4.98 16 10 N -0.52 -20.61 5.26 -887.57 -4.66 -25.27 16 11 C 0.05 2.01 6.17 86.45 0.53 2.54 16 12 C -0.12 -5.56 5.26 31.47 0.17 -5.39 16 13 C 0.24 12.01 0.95 -10.34 -0.01 12.00 16 14 O -0.59 -32.17 13.09 -148.98 -1.95 -34.12 16 15 C -0.56 -29.78 8.14 25.60 0.21 -29.57 16 16 H 0.06 3.17 7.78 -2.91 -0.02 3.14 16 17 C 0.03 1.50 5.28 84.65 0.45 1.95 16 18 N -0.91 -49.28 11.02 21.45 0.24 -49.04 16 19 Si 0.96 41.87 29.54 68.60 2.03 43.90 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 23 C 0.06 2.70 5.67 86.65 0.49 3.19 16 24 O -0.21 -6.45 10.24 -3.67 -0.04 -6.49 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 0.76 8.01 -2.39 -0.02 0.74 16 28 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 0.92 8.02 -2.39 -0.02 0.90 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.20 4.08 8.06 -2.91 -0.02 4.05 16 35 H 0.13 3.62 8.11 -2.39 -0.02 3.60 16 36 H 0.08 2.21 7.82 -2.38 -0.02 2.19 16 37 H 0.05 1.83 7.57 -2.39 -0.02 1.81 16 38 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 2.29 7.99 -2.39 -0.02 2.27 16 40 H 0.05 2.50 7.84 -2.39 -0.02 2.48 16 41 H 0.37 20.58 7.48 -74.06 -0.55 20.02 16 42 H 0.27 13.80 8.31 -92.71 -0.77 13.03 16 43 H 0.07 2.55 7.92 -2.38 -0.02 2.53 16 44 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -63.63 356.79 -1.64 -65.27 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: 0.42 Total: 34.83 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 5.76 Total: -8.79 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -7.86 Total: -94.59 kcal Atomic # 8 Polarization: -38.62 SS G_CDS: -1.99 Total: -40.61 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -63.63 -1.64 -65.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148424.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.009 kcal (2) G-P(sol) polarization free energy of solvation -63.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds