Wall clock time and date at job start Tue Mar 31 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 C 1.52993 * 109.47192 * 240.00177 * 2 1 3 5 5 C 1.50706 * 109.47329 * 119.99751 * 2 1 3 6 6 C 1.34323 * 126.43909 * 59.99982 * 5 2 1 7 7 N 1.34479 * 107.66789 * 180.02562 * 6 5 2 8 8 C 1.30262 * 108.69743 * 359.97438 * 7 6 5 9 9 C 1.50706 * 125.61494 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.46840 * 90.02684 * 9 8 7 11 11 C 1.48720 * 111.01831 * 54.48842 * 10 9 8 12 12 C 1.54381 * 104.51692 * 158.96284 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 O 1.42910 * 110.32027 * 241.04997 * 13 12 11 15 15 C 1.50697 * 110.32628 * 118.84329 * 13 12 11 16 16 H 1.07995 * 120.00073 * 241.44522 * 15 13 12 17 17 C 1.37883 * 119.99811 * 61.45328 * 15 13 12 18 18 N 1.31514 * 119.99933 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99722 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46935 * 90.00162 * 19 17 15 21 21 H 1.48500 * 109.47103 * 209.99421 * 19 17 15 22 22 H 1.48498 * 109.47343 * 330.00155 * 19 17 15 23 23 C 1.48567 * 110.99718 * 169.99824 * 10 9 8 24 24 O 1.33965 * 108.76074 * 0.22870 * 8 7 6 25 25 H 1.09004 * 109.47305 * 299.99995 * 1 2 3 26 26 H 1.09004 * 109.47258 * 59.99984 * 1 2 3 27 27 H 1.09001 * 109.47285 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47579 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47024 * 300.00159 * 3 2 1 30 30 H 1.09004 * 109.46983 * 59.99808 * 3 2 1 31 31 H 1.09002 * 109.46982 * 299.99250 * 4 2 1 32 32 H 1.08997 * 109.47683 * 60.00171 * 4 2 1 33 33 H 1.09006 * 109.47084 * 179.97438 * 4 2 1 34 34 H 1.07999 * 126.17031 * 359.97438 * 6 5 2 35 35 H 1.09003 * 109.47369 * 330.02494 * 9 8 7 36 36 H 1.09000 * 109.46724 * 210.02391 * 9 8 7 37 37 H 1.09004 * 110.38960 * 40.24251 * 11 10 9 38 38 H 1.08996 * 110.50963 * 277.74694 * 11 10 9 39 39 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 40 40 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 41 41 H 0.96699 * 114.00154 * 298.54485 * 14 13 12 42 42 H 0.97002 * 119.99478 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.41133 * 82.17552 * 23 10 9 44 44 H 1.09001 * 110.41003 * 319.73948 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7889 -1.9870 1.5701 7 7 2.4169 -2.2264 2.7349 8 6 3.0306 -1.1401 3.1094 9 6 3.8522 -0.9841 4.3631 10 7 5.2505 -1.3334 4.0787 11 6 5.7763 -0.5410 2.9353 12 6 7.3103 -0.5945 3.1003 13 6 7.5450 -0.8747 4.5989 14 8 8.2789 0.1969 5.1952 15 6 8.2801 -2.1778 4.7790 16 1 7.8183 -2.9874 5.3246 17 6 9.5424 -2.3364 4.2474 18 7 10.1050 -1.3503 3.5836 19 14 10.4539 -3.9515 4.4712 20 1 10.1341 -4.8610 3.3416 21 1 11.9162 -3.6946 4.5011 22 1 10.0359 -4.5829 5.7486 23 6 6.1329 -0.9659 5.2160 24 8 2.8063 -0.1830 2.1993 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.1952 -2.6936 1.0092 35 1 3.4628 -1.6451 5.1374 36 1 3.7984 0.0490 4.7064 37 1 5.4235 0.4887 2.9927 38 1 5.4798 -0.9932 1.9889 39 1 7.7548 0.3603 2.8194 40 1 7.7284 -1.3987 2.4948 41 1 9.1582 0.3305 4.8156 42 1 10.9929 -1.4621 3.2093 43 1 6.1032 -1.7378 5.9851 44 1 5.8365 -0.0027 5.6313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592148425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:56 Heat of formation + Delta-G solvation = -30.225620 kcal Electronic energy + Delta-G solvation = -24529.379148 eV Core-core repulsion = 21062.175116 eV Total energy + Delta-G solvation = -3467.204031 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.25260 -38.43890 -37.21776 -35.03365 -34.53918 -32.08766 -31.21796 -28.83404 -27.93646 -27.60117 -27.55148 -25.76892 -24.08048 -22.66620 -21.66861 -20.16651 -19.70268 -19.45226 -17.04676 -16.88606 -16.65345 -15.45182 -15.27256 -14.81440 -14.59807 -14.34802 -14.21022 -13.92382 -13.77476 -13.40418 -12.96341 -12.65719 -12.53710 -12.41129 -12.20520 -11.97452 -11.83080 -11.64630 -11.38079 -11.31819 -11.19706 -11.17077 -11.08894 -10.91920 -10.56175 -10.47079 -10.32941 -10.26463 -9.93067 -9.07199 -8.63199 -8.54977 -8.12556 -7.92623 -6.14569 -4.19893 1.54369 2.67896 2.83632 3.29099 3.35518 3.40208 4.08562 4.38181 4.41090 4.54680 4.61224 4.62350 4.92820 5.09155 5.15913 5.28047 5.29958 5.40552 5.46333 5.52446 5.55719 5.57776 5.65843 5.69010 5.76158 5.87597 5.92533 5.98512 6.04513 6.07911 6.14178 6.18289 6.28651 6.41844 6.46996 6.84131 7.00469 7.16736 7.43663 7.60310 7.63233 7.86955 7.92856 8.22091 8.82717 9.43116 9.52289 10.93055 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.003676 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.581476 B = 7615.975962 C = 7680.256541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.042 4.042 6 C -0.040 4.040 7 N -0.469 5.469 8 C 0.206 3.794 9 C 0.138 3.862 10 N -0.492 5.492 11 C 0.033 3.967 12 C -0.119 4.119 13 C 0.251 3.749 14 O -0.594 6.594 15 C -0.519 4.519 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.280 1.280 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.053 3.947 24 O -0.196 6.196 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.177 0.823 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.032 0.968 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.383 0.617 42 H 0.265 0.735 43 H 0.083 0.917 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.828 4.585 -7.796 19.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.020 3.980 3 C -0.202 4.202 4 C -0.198 4.198 5 C -0.096 4.096 6 C -0.179 4.179 7 N -0.197 5.197 8 C -0.001 4.001 9 C 0.009 3.991 10 N -0.218 5.218 11 C -0.095 4.095 12 C -0.157 4.157 13 C 0.211 3.789 14 O -0.403 6.403 15 C -0.557 4.557 16 H 0.082 0.918 17 C -0.136 4.136 18 N -0.541 5.541 19 Si 0.728 3.272 20 H -0.206 1.206 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.074 4.074 24 O -0.083 6.083 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.194 0.806 35 H 0.133 0.867 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.234 0.766 42 H 0.075 0.925 43 H 0.102 0.898 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.175 3.593 -7.266 18.992 hybrid contribution 0.952 0.432 -0.685 1.250 sum -16.223 4.025 -7.951 18.510 Atomic orbital electron populations 1.21922 0.92517 1.02645 1.02503 1.19076 0.95579 0.95197 0.88197 1.21870 1.02014 0.94016 1.02296 1.21934 1.02003 1.00420 0.95420 1.23283 0.98690 0.94772 0.92847 1.22949 1.04312 0.95273 0.95317 1.70465 1.10965 1.25968 1.12344 1.26108 0.98849 0.81651 0.93521 1.20720 0.89066 1.01278 0.88011 1.65608 0.98523 1.51845 1.05817 1.23201 0.98187 0.94244 0.93862 1.22850 0.90570 1.01148 1.01168 1.19226 0.86653 0.86138 0.86898 1.86079 1.33612 1.54828 1.65786 1.21646 1.00678 0.98878 1.34500 0.91816 1.25005 0.97373 0.97007 0.94164 1.69698 1.16041 1.31835 1.36569 0.86461 0.78548 0.83477 0.78723 1.20607 1.21263 1.19760 1.23066 0.93371 0.98416 0.92532 1.84403 1.53987 1.41475 1.28402 0.92212 0.91340 0.91935 0.91852 0.91730 0.92155 0.91912 0.91339 0.91893 0.80574 0.86735 0.92303 0.94992 0.92058 0.92939 0.90566 0.76642 0.92485 0.89835 0.94560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.35 37.15 0.31 -0.74 16 2 C 0.02 0.19 0.93 -155.66 -0.15 0.05 16 3 C -0.14 -1.37 8.06 37.16 0.30 -1.07 16 4 C -0.14 -1.20 8.35 37.15 0.31 -0.89 16 5 C -0.04 -0.56 5.70 -35.69 -0.20 -0.77 16 6 C -0.04 -0.56 11.24 -17.77 -0.20 -0.76 16 7 N -0.47 -8.07 11.29 -11.10 -0.13 -8.19 16 8 C 0.21 3.47 6.71 -12.94 -0.09 3.38 16 9 C 0.14 2.27 5.69 -4.97 -0.03 2.25 16 10 N -0.49 -9.89 5.48 -231.26 -1.27 -11.16 16 11 C 0.03 0.67 5.42 -2.09 -0.01 0.66 16 12 C -0.12 -2.81 5.55 -25.35 -0.14 -2.95 16 13 C 0.25 6.26 1.05 -90.39 -0.10 6.16 16 14 O -0.59 -15.37 12.94 -35.23 -0.46 -15.82 16 15 C -0.52 -14.10 8.10 -34.44 -0.28 -14.38 16 16 H 0.06 1.75 7.53 -52.49 -0.40 1.35 16 17 C 0.07 1.76 5.02 -17.82 -0.09 1.67 16 18 N -0.90 -24.31 10.82 55.43 0.60 -23.71 16 19 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 23 C 0.05 1.14 5.77 -2.18 -0.01 1.13 16 24 O -0.20 -3.10 10.04 5.38 0.05 -3.04 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.44 8.02 -51.93 -0.42 0.02 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.50 8.02 -51.93 -0.42 0.08 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.18 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 36 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 37 H 0.03 0.62 8.00 -51.93 -0.42 0.20 16 38 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 39 H 0.05 1.24 7.98 -51.93 -0.41 0.83 16 40 H 0.08 1.99 7.23 -51.93 -0.38 1.62 16 41 H 0.38 10.04 7.33 45.56 0.33 10.37 16 42 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 43 H 0.08 1.78 7.67 -51.93 -0.40 1.38 16 44 H 0.04 0.74 7.76 -51.93 -0.40 0.33 16 LS Contribution 354.24 15.07 5.34 5.34 Total: -1.00 -29.64 354.24 -7.91 -37.55 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -6.66 Total: 9.12 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -0.37 Total: -6.25 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.79 Total: -43.06 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.40 Total: -18.87 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.64 -7.91 -37.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.327 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds