Wall clock time and date at job start Tue Mar 31 2020 06:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47209 * 2 1 4 4 C 1.52993 * 109.47192 * 240.00177 * 2 1 3 5 5 C 1.50706 * 109.47329 * 119.99751 * 2 1 3 6 6 C 1.34323 * 126.43909 * 59.99982 * 5 2 1 7 7 N 1.34479 * 107.66789 * 180.02562 * 6 5 2 8 8 C 1.30262 * 108.69743 * 359.97438 * 7 6 5 9 9 C 1.50706 * 125.61494 * 179.97438 * 8 7 6 10 10 N 1.46900 * 109.46840 * 90.02684 * 9 8 7 11 11 C 1.48720 * 111.01831 * 54.48842 * 10 9 8 12 12 C 1.54381 * 104.51692 * 158.96284 * 11 10 9 13 13 C 1.54257 * 105.14978 * 336.27274 * 12 11 10 14 14 O 1.42910 * 110.32027 * 241.04997 * 13 12 11 15 15 C 1.50697 * 110.32628 * 118.84329 * 13 12 11 16 16 H 1.07995 * 120.00073 * 241.44522 * 15 13 12 17 17 C 1.37883 * 119.99811 * 61.45328 * 15 13 12 18 18 N 1.31514 * 119.99933 * 0.02562 * 17 15 13 19 19 Si 1.86796 * 119.99722 * 179.97438 * 17 15 13 20 20 H 1.48508 * 109.46935 * 90.00162 * 19 17 15 21 21 H 1.48500 * 109.47103 * 209.99421 * 19 17 15 22 22 H 1.48498 * 109.47343 * 330.00155 * 19 17 15 23 23 C 1.48567 * 110.99718 * 169.99824 * 10 9 8 24 24 O 1.33965 * 108.76074 * 0.22870 * 8 7 6 25 25 H 1.09004 * 109.47305 * 299.99995 * 1 2 3 26 26 H 1.09004 * 109.47258 * 59.99984 * 1 2 3 27 27 H 1.09001 * 109.47285 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47579 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47024 * 300.00159 * 3 2 1 30 30 H 1.09004 * 109.46983 * 59.99808 * 3 2 1 31 31 H 1.09002 * 109.46982 * 299.99250 * 4 2 1 32 32 H 1.08997 * 109.47683 * 60.00171 * 4 2 1 33 33 H 1.09006 * 109.47084 * 179.97438 * 4 2 1 34 34 H 1.07999 * 126.17031 * 359.97438 * 6 5 2 35 35 H 1.09003 * 109.47369 * 330.02494 * 9 8 7 36 36 H 1.09000 * 109.46724 * 210.02391 * 9 8 7 37 37 H 1.09004 * 110.38960 * 40.24251 * 11 10 9 38 38 H 1.08996 * 110.50963 * 277.74694 * 11 10 9 39 39 H 1.09002 * 110.32526 * 217.32092 * 12 11 10 40 40 H 1.08998 * 110.32190 * 95.21733 * 12 11 10 41 41 H 0.96699 * 114.00154 * 298.54485 * 14 13 12 42 42 H 0.97002 * 119.99478 * 180.02562 * 18 17 15 43 43 H 1.08999 * 110.41133 * 82.17552 * 23 10 9 44 44 H 1.09001 * 110.41003 * 319.73948 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.7889 -1.9870 1.5701 7 7 2.4169 -2.2264 2.7349 8 6 3.0306 -1.1401 3.1094 9 6 3.8522 -0.9841 4.3631 10 7 5.2505 -1.3334 4.0787 11 6 5.7763 -0.5410 2.9353 12 6 7.3103 -0.5945 3.1003 13 6 7.5450 -0.8747 4.5989 14 8 8.2789 0.1969 5.1952 15 6 8.2801 -2.1778 4.7790 16 1 7.8183 -2.9874 5.3246 17 6 9.5424 -2.3364 4.2474 18 7 10.1050 -1.3503 3.5836 19 14 10.4539 -3.9515 4.4712 20 1 10.1341 -4.8610 3.3416 21 1 11.9162 -3.6946 4.5011 22 1 10.0359 -4.5829 5.7486 23 6 6.1329 -0.9659 5.2160 24 8 2.8063 -0.1830 2.1993 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2491 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2494 34 1 1.1952 -2.6936 1.0092 35 1 3.4628 -1.6451 5.1374 36 1 3.7984 0.0490 4.7064 37 1 5.4235 0.4887 2.9927 38 1 5.4798 -0.9932 1.9889 39 1 7.7548 0.3603 2.8194 40 1 7.7284 -1.3987 2.4948 41 1 9.1582 0.3305 4.8156 42 1 10.9929 -1.4621 3.2093 43 1 6.1032 -1.7378 5.9851 44 1 5.8365 -0.0027 5.6313 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148425.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:55 Heat of formation + Delta-G solvation = -52.928612 kcal Electronic energy + Delta-G solvation = -24530.363623 eV Core-core repulsion = 21062.175116 eV Total energy + Delta-G solvation = -3468.188507 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.40284 -40.16103 -38.02989 -36.81536 -35.75631 -34.15904 -32.75373 -30.28339 -29.66566 -28.33534 -28.20369 -27.31915 -25.84870 -23.73848 -23.05180 -21.69233 -21.32628 -20.61935 -19.05270 -18.05596 -17.87916 -16.94971 -16.77296 -16.52084 -15.92786 -15.68996 -15.62355 -14.99353 -14.94460 -14.51630 -14.34868 -14.19096 -14.01303 -13.47904 -13.24831 -13.20160 -13.13017 -12.94968 -12.78370 -12.64981 -12.54129 -12.44050 -12.34038 -12.29201 -12.12219 -12.03304 -11.93249 -11.91726 -11.40059 -11.01656 -10.60741 -10.16038 -9.76655 -9.43299 -8.19461 -6.31727 0.40329 1.41069 1.43005 1.52700 1.57496 1.67746 2.41219 2.89478 3.03371 3.13195 3.55933 3.80021 3.86864 3.91943 3.98407 4.03032 4.18133 4.22321 4.26806 4.38551 4.49613 4.55141 4.63187 4.70869 4.71424 4.75335 4.81012 4.84019 4.93771 4.99604 5.00376 5.07401 5.15607 5.22805 5.27506 5.31633 5.34133 5.36649 5.60952 5.73791 5.82106 5.97859 6.19826 6.72944 6.75742 7.35677 7.43523 8.86551 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023414 B = 0.003676 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.581476 B = 7615.975962 C = 7680.256541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.018 3.982 3 C -0.144 4.144 4 C -0.139 4.139 5 C -0.034 4.034 6 C -0.055 4.055 7 N -0.491 5.491 8 C 0.184 3.816 9 C 0.141 3.859 10 N -0.505 5.505 11 C 0.049 3.951 12 C -0.110 4.110 13 C 0.234 3.766 14 O -0.598 6.598 15 C -0.543 4.543 16 H 0.054 0.946 17 C 0.026 3.974 18 N -0.915 5.915 19 Si 0.957 3.043 20 H -0.280 1.280 21 H -0.280 1.280 22 H -0.271 1.271 23 C 0.063 3.937 24 O -0.206 6.206 25 H 0.052 0.948 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.043 0.957 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.203 0.797 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.044 0.956 41 H 0.378 0.622 42 H 0.267 0.733 43 H 0.082 0.918 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.536 4.632 -8.764 21.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.018 3.982 3 C -0.201 4.201 4 C -0.196 4.196 5 C -0.087 4.087 6 C -0.194 4.194 7 N -0.221 5.221 8 C -0.023 4.023 9 C 0.013 3.987 10 N -0.231 5.231 11 C -0.078 4.078 12 C -0.149 4.149 13 C 0.195 3.805 14 O -0.407 6.407 15 C -0.581 4.581 16 H 0.072 0.928 17 C -0.174 4.174 18 N -0.556 5.556 19 Si 0.783 3.217 20 H -0.206 1.206 21 H -0.205 1.205 22 H -0.196 1.196 23 C -0.065 4.065 24 O -0.093 6.093 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.088 0.912 28 H 0.062 0.938 29 H 0.109 0.891 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.112 0.888 33 H 0.062 0.938 34 H 0.220 0.780 35 H 0.146 0.854 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.227 0.773 42 H 0.077 0.923 43 H 0.101 0.899 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -18.894 3.650 -8.231 20.930 hybrid contribution 1.437 0.432 -0.454 1.568 sum -17.458 4.082 -8.685 19.922 Atomic orbital electron populations 1.21922 0.90416 1.03449 1.03392 1.19358 0.97094 0.94937 0.86848 1.21881 1.00792 0.94198 1.03276 1.21953 1.00790 1.01130 0.95757 1.24126 0.96871 0.94905 0.92835 1.23400 1.04843 0.96273 0.94865 1.70420 1.11492 1.26472 1.13752 1.26038 1.00019 0.82059 0.94187 1.20750 0.86688 1.02742 0.88569 1.65512 1.00329 1.52291 1.04978 1.22966 0.95687 0.95094 0.94082 1.22623 0.92850 0.99378 1.00002 1.19460 0.88081 0.85118 0.87867 1.86071 1.33385 1.55169 1.66047 1.21881 1.01502 0.99716 1.34989 0.92785 1.25660 0.98030 0.99817 0.93880 1.69773 1.16203 1.32991 1.36590 0.85578 0.77637 0.80044 0.78463 1.20589 1.20518 1.19599 1.22891 0.91695 0.99110 0.92768 1.84400 1.54447 1.41611 1.28835 0.92869 0.88928 0.91223 0.93763 0.89128 0.92833 0.91244 0.88767 0.93825 0.78003 0.85353 0.90441 0.93621 0.92429 0.93645 0.93691 0.77270 0.92324 0.89935 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.62 8.35 71.98 0.60 -1.02 16 2 C 0.02 0.31 0.93 -52.93 -0.05 0.26 16 3 C -0.14 -2.47 8.06 71.98 0.58 -1.89 16 4 C -0.14 -2.04 8.35 71.98 0.60 -1.44 16 5 C -0.03 -0.86 5.70 24.79 0.14 -0.72 16 6 C -0.06 -1.49 11.24 83.39 0.94 -0.55 16 7 N -0.49 -16.54 11.29 -303.82 -3.43 -19.97 16 8 C 0.18 6.05 6.71 88.34 0.59 6.64 16 9 C 0.14 4.48 5.69 85.56 0.49 4.96 16 10 N -0.50 -20.06 5.48 -885.57 -4.85 -24.91 16 11 C 0.05 2.02 5.42 86.42 0.47 2.49 16 12 C -0.11 -5.29 5.55 31.49 0.17 -5.12 16 13 C 0.23 11.82 1.05 -10.65 -0.01 11.81 16 14 O -0.60 -31.28 12.94 -148.98 -1.93 -33.21 16 15 C -0.54 -29.92 8.10 25.60 0.21 -29.71 16 16 H 0.05 3.01 7.53 -2.91 -0.02 2.98 16 17 C 0.03 1.40 5.02 84.66 0.43 1.82 16 18 N -0.92 -49.97 10.82 21.45 0.23 -49.73 16 19 Si 0.96 43.63 29.54 68.60 2.03 45.66 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 23 C 0.06 2.67 5.77 86.45 0.50 3.17 16 24 O -0.21 -6.36 10.04 -3.65 -0.04 -6.40 16 25 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 27 H 0.07 0.75 8.02 -2.39 -0.02 0.74 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 31 H 0.07 0.93 8.02 -2.39 -0.02 0.91 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 34 H 0.20 4.05 8.06 -2.91 -0.02 4.03 16 35 H 0.13 3.68 8.14 -2.39 -0.02 3.66 16 36 H 0.08 2.17 7.88 -2.39 -0.02 2.15 16 37 H 0.05 1.73 8.00 -2.38 -0.02 1.71 16 38 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 39 H 0.04 2.19 7.98 -2.39 -0.02 2.17 16 40 H 0.04 2.41 7.23 -2.39 -0.02 2.39 16 41 H 0.38 20.20 7.33 -74.06 -0.54 19.66 16 42 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 43 H 0.08 3.50 7.67 -2.39 -0.02 3.48 16 44 H 0.05 1.96 7.76 -2.39 -0.02 1.94 16 Total: -1.00 -63.78 354.24 -1.90 -65.68 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: 0.44 Total: 32.16 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.66 Total: -9.28 kcal Atomic # 7 Polarization: -86.56 SS G_CDS: -8.05 Total: -94.61 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -1.96 Total: -39.60 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -63.78 -1.90 -65.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148425.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.749 kcal (2) G-P(sol) polarization free energy of solvation -63.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds