Wall clock time and date at job start Tue Mar 31 2020 06:55:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 C 1.50703 * 109.46914 * 179.97438 * 3 2 1 5 5 N 1.30248 * 125.61866 * 90.03117 * 4 3 2 6 6 C 1.34476 * 108.70733 * 179.97438 * 5 4 3 7 7 C 1.50699 * 126.17282 * 179.97438 * 6 5 4 8 8 C 1.34339 * 107.66158 * 359.97438 * 6 5 4 9 9 C 1.50698 * 126.43891 * 180.02562 * 8 6 5 10 10 N 1.46904 * 109.47407 * 90.00384 * 9 8 6 11 11 C 1.48559 * 111.00066 * 69.86567 * 10 9 8 12 12 C 1.54387 * 104.58955 * 159.04379 * 11 10 9 13 13 C 1.54259 * 105.06271 * 336.15098 * 12 11 10 14 14 O 1.42894 * 110.32466 * 118.89659 * 13 12 11 15 15 C 1.50701 * 110.32157 * 241.10373 * 13 12 11 16 16 H 1.08005 * 119.99834 * 118.53799 * 15 13 12 17 17 C 1.37878 * 120.00375 * 298.54694 * 15 13 12 18 18 N 1.31512 * 119.99477 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00285 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46909 * 90.00158 * 19 17 15 21 21 H 1.48505 * 109.47218 * 209.99855 * 19 17 15 22 22 H 1.48495 * 109.47005 * 329.99872 * 19 17 15 23 23 C 1.48560 * 111.00239 * 185.29090 * 10 9 8 24 24 O 1.33969 * 125.61848 * 270.30892 * 4 3 2 25 25 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47344 * 300.00120 * 1 2 3 27 27 H 1.09004 * 109.47253 * 59.99634 * 1 2 3 28 28 H 1.09002 * 109.47134 * 240.00374 * 2 1 3 29 29 H 1.09004 * 109.47253 * 120.00366 * 2 1 3 30 30 H 1.09002 * 109.46745 * 60.00136 * 3 2 1 31 31 H 1.08994 * 109.47219 * 300.00321 * 3 2 1 32 32 H 1.09004 * 109.46954 * 269.99926 * 7 6 5 33 33 H 1.08998 * 109.46600 * 29.99730 * 7 6 5 34 34 H 1.08998 * 109.46920 * 149.99594 * 7 6 5 35 35 H 1.08996 * 109.47595 * 329.99465 * 9 8 6 36 36 H 1.09004 * 109.46561 * 209.99604 * 9 8 6 37 37 H 1.08999 * 110.40971 * 40.26912 * 11 10 9 38 38 H 1.08999 * 110.41180 * 277.82119 * 11 10 9 39 39 H 1.09000 * 110.32138 * 95.04641 * 12 11 10 40 40 H 1.09003 * 110.32046 * 217.14933 * 12 11 10 41 41 H 0.96701 * 113.99845 * 61.45719 * 14 13 12 42 42 H 0.97001 * 119.99820 * 180.02562 * 18 17 15 43 43 H 1.09004 * 110.40940 * 82.17346 * 23 10 9 44 44 H 1.08995 * 110.40669 * 319.73353 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3060 1.4428 -1.0578 6 6 5.5924 1.4432 -0.6661 7 6 6.7977 1.4431 -1.5708 8 6 5.6094 1.4435 0.6772 9 6 6.8330 1.4446 1.5568 10 7 7.2298 2.8299 1.8424 11 6 6.2479 3.4906 2.7404 12 6 7.0253 4.6677 3.3677 13 6 8.5106 4.2611 3.2767 14 8 9.2338 5.1989 2.4770 15 6 9.1140 4.1715 4.6547 16 1 9.5085 3.2314 5.0113 17 6 9.1624 5.2894 5.4602 18 7 8.6814 6.4338 5.0262 19 14 9.9098 5.1781 7.1685 20 1 11.3629 5.4747 7.0933 21 1 9.2493 6.1626 8.0630 22 1 9.7112 3.8087 7.7074 23 6 8.5057 2.8725 2.6021 24 8 4.3267 1.4367 1.0900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 7.0884 0.4154 -1.7886 33 1 6.5538 1.9566 -2.5008 34 1 7.6224 1.9573 -1.0773 35 1 7.6479 0.9310 1.0466 36 1 6.6087 0.9309 2.4917 37 1 5.9155 2.7990 3.5145 38 1 5.3969 3.8592 2.1676 39 1 6.8479 5.5826 2.8024 40 1 6.7314 4.8036 4.4085 41 1 9.2326 6.0994 2.8293 42 1 8.7157 7.2205 5.5927 43 1 9.3546 2.7757 1.9253 44 1 8.5265 2.0842 3.3546 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592155310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:15 Heat of formation + Delta-G solvation = -40.082516 kcal Electronic energy + Delta-G solvation = -24125.394266 eV Core-core repulsion = 20657.762808 eV Total energy + Delta-G solvation = -3467.631458 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.19774 -38.41018 -35.65736 -35.09631 -34.80064 -32.14187 -32.08395 -29.94707 -28.45004 -28.04572 -27.08714 -24.71842 -23.56532 -22.18404 -21.43380 -20.65915 -20.08008 -19.44847 -17.10067 -16.64344 -16.43989 -15.48794 -15.35819 -15.05284 -14.84028 -14.32571 -14.24586 -13.65623 -13.44619 -13.32399 -13.09374 -12.73932 -12.64791 -12.46562 -12.29730 -12.04447 -11.82198 -11.62826 -11.51027 -11.31921 -11.12599 -11.06979 -11.00024 -10.71840 -10.58330 -10.54320 -10.41038 -10.33096 -9.88511 -9.18412 -8.62348 -8.43263 -8.12021 -7.91274 -6.22905 -4.32109 1.57274 2.72429 2.80531 3.20584 3.27922 3.30362 3.98876 4.27193 4.60775 4.68809 4.70128 4.83758 4.94036 5.04243 5.06755 5.20595 5.34700 5.37962 5.47122 5.51484 5.68260 5.68950 5.71781 5.75390 5.87052 5.91957 5.96415 5.96916 5.99016 6.12755 6.16403 6.25325 6.38609 6.53259 6.55877 6.88365 7.00124 7.28095 7.44070 7.49172 7.54853 7.77780 7.89756 8.16630 8.70754 9.36859 9.53966 10.83739 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023565 B = 0.003431 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.928312 B = 8159.419420 C = 8792.860719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.020 4.020 4 C 0.181 3.819 5 N -0.480 5.480 6 C -0.003 4.003 7 C -0.070 4.070 8 C -0.027 4.027 9 C 0.127 3.873 10 N -0.505 5.505 11 C 0.035 3.965 12 C -0.119 4.119 13 C 0.255 3.745 14 O -0.585 6.585 15 C -0.539 4.539 16 H 0.060 0.940 17 C 0.070 3.930 18 N -0.893 5.893 19 Si 0.899 3.101 20 H -0.278 1.278 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.051 3.949 24 O -0.199 6.199 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.035 0.965 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.379 0.621 42 H 0.267 0.733 43 H 0.077 0.923 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.398 -10.660 -8.293 17.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.058 4.058 4 C -0.026 4.026 5 N -0.211 5.211 6 C -0.124 4.124 7 C -0.127 4.127 8 C -0.080 4.080 9 C -0.002 4.002 10 N -0.230 5.230 11 C -0.093 4.093 12 C -0.157 4.157 13 C 0.215 3.785 14 O -0.394 6.394 15 C -0.577 4.577 16 H 0.078 0.922 17 C -0.133 4.133 18 N -0.532 5.532 19 Si 0.727 3.273 20 H -0.204 1.204 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.076 4.076 24 O -0.086 6.086 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.121 0.879 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.229 0.771 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.518 -10.742 -9.687 18.491 hybrid contribution 0.345 0.117 2.822 2.845 sum -11.173 -10.625 -6.866 16.878 Atomic orbital electron populations 1.21754 0.94751 1.02124 1.02202 1.21532 0.96330 0.95011 1.03061 1.20102 0.81508 0.99174 1.05030 1.26040 0.95935 1.01687 0.78936 1.70285 1.01777 1.18620 1.30370 1.21419 0.93082 1.05730 0.92123 1.20111 0.92451 1.02210 0.97929 1.23118 0.83101 1.06814 0.94958 1.20631 0.89797 0.93048 0.96716 1.65509 1.04190 1.11650 1.41626 1.23154 0.95163 0.97321 0.93658 1.22858 0.97704 0.95161 1.00025 1.19183 0.87365 0.84239 0.87750 1.86130 1.76808 1.23065 1.53361 1.21695 1.40335 0.96351 0.99324 0.92163 1.25005 0.94374 0.95258 0.98621 1.69712 1.45444 1.00312 1.37773 0.86482 0.79417 0.77950 0.83483 1.20416 1.21094 1.19871 1.23116 0.90444 0.98722 0.95336 1.84377 1.16781 1.69871 1.37564 0.92294 0.92359 0.92323 0.91146 0.91522 0.89049 0.87855 0.91335 0.90938 0.89805 0.87829 0.93131 0.94685 0.92195 0.92674 0.90965 0.77077 0.92289 0.90487 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.15 0.37 -0.59 16 2 C -0.12 -1.02 5.92 -26.73 -0.16 -1.17 16 3 C -0.02 -0.20 5.84 -27.88 -0.16 -0.36 16 4 C 0.18 2.62 7.60 -12.95 -0.10 2.53 16 5 N -0.48 -7.71 11.29 -7.36 -0.08 -7.79 16 6 C 0.00 -0.05 7.11 -82.81 -0.59 -0.64 16 7 C -0.07 -0.91 10.05 36.01 0.36 -0.55 16 8 C -0.03 -0.44 6.38 -35.69 -0.23 -0.67 16 9 C 0.13 2.03 4.97 -4.97 -0.02 2.01 16 10 N -0.51 -9.82 5.36 -231.41 -1.24 -11.06 16 11 C 0.03 0.71 5.98 -2.18 -0.01 0.69 16 12 C -0.12 -2.80 5.55 -25.35 -0.14 -2.94 16 13 C 0.25 6.30 1.05 -90.39 -0.10 6.21 16 14 O -0.59 -15.40 12.94 -35.23 -0.46 -15.86 16 15 C -0.54 -14.22 8.08 -34.44 -0.28 -14.50 16 16 H 0.06 1.57 7.58 -52.48 -0.40 1.18 16 17 C 0.07 1.83 5.03 -17.82 -0.09 1.74 16 18 N -0.89 -23.74 10.82 55.43 0.60 -23.14 16 19 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C 0.05 1.07 5.76 -2.18 -0.01 1.06 16 24 O -0.20 -3.25 10.78 5.36 0.06 -3.19 16 25 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.11 7.79 -51.93 -0.40 0.71 16 35 H 0.10 1.43 7.78 -51.93 -0.40 1.03 16 36 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 37 H 0.03 0.69 7.82 -51.93 -0.41 0.28 16 38 H 0.06 1.21 8.12 -51.93 -0.42 0.78 16 39 H 0.05 1.35 7.98 -51.93 -0.41 0.93 16 40 H 0.07 1.81 7.24 -51.93 -0.38 1.44 16 41 H 0.38 10.11 7.33 45.56 0.33 10.44 16 42 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.08 1.61 8.08 -51.93 -0.42 1.19 16 44 H 0.05 0.98 7.56 -51.93 -0.39 0.59 16 LS Contribution 358.03 15.07 5.40 5.40 Total: -1.00 -29.40 358.03 -8.56 -37.96 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -6.65 Total: 9.47 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -1.16 Total: -7.18 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: -0.72 Total: -41.99 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.40 Total: -19.05 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.40 -8.56 -37.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.127 kcal (2) G-P(sol) polarization free energy of solvation -29.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds