Wall clock time and date at job start Tue Mar 31 2020 06:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 C 1.50703 * 109.46914 * 179.97438 * 3 2 1 5 5 N 1.30248 * 125.61866 * 90.03117 * 4 3 2 6 6 C 1.34476 * 108.70733 * 179.97438 * 5 4 3 7 7 C 1.50699 * 126.17282 * 179.97438 * 6 5 4 8 8 C 1.34339 * 107.66158 * 359.97438 * 6 5 4 9 9 C 1.50698 * 126.43891 * 180.02562 * 8 6 5 10 10 N 1.46904 * 109.47407 * 90.00384 * 9 8 6 11 11 C 1.48559 * 111.00066 * 69.86567 * 10 9 8 12 12 C 1.54387 * 104.58955 * 159.04379 * 11 10 9 13 13 C 1.54259 * 105.06271 * 336.15098 * 12 11 10 14 14 O 1.42894 * 110.32466 * 118.89659 * 13 12 11 15 15 C 1.50701 * 110.32157 * 241.10373 * 13 12 11 16 16 H 1.08005 * 119.99834 * 118.53799 * 15 13 12 17 17 C 1.37878 * 120.00375 * 298.54694 * 15 13 12 18 18 N 1.31512 * 119.99477 * 0.02562 * 17 15 13 19 19 Si 1.86797 * 120.00285 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46909 * 90.00158 * 19 17 15 21 21 H 1.48505 * 109.47218 * 209.99855 * 19 17 15 22 22 H 1.48495 * 109.47005 * 329.99872 * 19 17 15 23 23 C 1.48560 * 111.00239 * 185.29090 * 10 9 8 24 24 O 1.33969 * 125.61848 * 270.30892 * 4 3 2 25 25 H 1.08998 * 109.47432 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47344 * 300.00120 * 1 2 3 27 27 H 1.09004 * 109.47253 * 59.99634 * 1 2 3 28 28 H 1.09002 * 109.47134 * 240.00374 * 2 1 3 29 29 H 1.09004 * 109.47253 * 120.00366 * 2 1 3 30 30 H 1.09002 * 109.46745 * 60.00136 * 3 2 1 31 31 H 1.08994 * 109.47219 * 300.00321 * 3 2 1 32 32 H 1.09004 * 109.46954 * 269.99926 * 7 6 5 33 33 H 1.08998 * 109.46600 * 29.99730 * 7 6 5 34 34 H 1.08998 * 109.46920 * 149.99594 * 7 6 5 35 35 H 1.08996 * 109.47595 * 329.99465 * 9 8 6 36 36 H 1.09004 * 109.46561 * 209.99604 * 9 8 6 37 37 H 1.08999 * 110.40971 * 40.26912 * 11 10 9 38 38 H 1.08999 * 110.41180 * 277.82119 * 11 10 9 39 39 H 1.09000 * 110.32138 * 95.04641 * 12 11 10 40 40 H 1.09003 * 110.32046 * 217.14933 * 12 11 10 41 41 H 0.96701 * 113.99845 * 61.45719 * 14 13 12 42 42 H 0.97001 * 119.99820 * 180.02562 * 18 17 15 43 43 H 1.09004 * 110.40940 * 82.17346 * 23 10 9 44 44 H 1.08995 * 110.40669 * 319.73353 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3060 1.4428 -1.0578 6 6 5.5924 1.4432 -0.6661 7 6 6.7977 1.4431 -1.5708 8 6 5.6094 1.4435 0.6772 9 6 6.8330 1.4446 1.5568 10 7 7.2298 2.8299 1.8424 11 6 6.2479 3.4906 2.7404 12 6 7.0253 4.6677 3.3677 13 6 8.5106 4.2611 3.2767 14 8 9.2338 5.1989 2.4770 15 6 9.1140 4.1715 4.6547 16 1 9.5085 3.2314 5.0113 17 6 9.1624 5.2894 5.4602 18 7 8.6814 6.4338 5.0262 19 14 9.9098 5.1781 7.1685 20 1 11.3629 5.4747 7.0933 21 1 9.2493 6.1626 8.0630 22 1 9.7112 3.8087 7.7074 23 6 8.5057 2.8725 2.6021 24 8 4.3267 1.4367 1.0900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 7.0884 0.4154 -1.7886 33 1 6.5538 1.9566 -2.5008 34 1 7.6224 1.9573 -1.0773 35 1 7.6479 0.9310 1.0466 36 1 6.6087 0.9309 2.4917 37 1 5.9155 2.7990 3.5145 38 1 5.3969 3.8592 2.1676 39 1 6.8479 5.5826 2.8024 40 1 6.7314 4.8036 4.4085 41 1 9.2326 6.0994 2.8293 42 1 8.7157 7.2205 5.5927 43 1 9.3546 2.7757 1.9253 44 1 8.5265 2.0842 3.3546 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592155310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:14 Heat of formation + Delta-G solvation = -61.995050 kcal Electronic energy + Delta-G solvation = -24126.344465 eV Core-core repulsion = 20657.762808 eV Total energy + Delta-G solvation = -3468.581657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.36435 -40.12179 -36.94522 -36.30088 -36.03685 -34.17543 -33.37896 -31.37156 -29.83008 -29.29759 -28.51708 -26.37241 -24.92651 -23.09464 -22.61468 -21.97000 -21.40350 -21.26259 -19.04276 -17.90081 -17.63224 -17.14576 -16.83291 -16.20086 -16.12808 -15.83310 -15.56950 -15.20850 -14.77139 -14.32586 -14.26927 -14.14805 -14.08104 -13.88173 -13.26764 -13.21776 -13.14408 -12.95716 -12.88992 -12.67064 -12.62079 -12.43277 -12.33493 -12.27038 -12.19583 -11.81645 -11.79940 -11.65229 -11.53796 -11.09949 -10.61399 -10.14888 -9.65314 -9.39643 -8.21794 -6.38370 0.39456 1.40711 1.42911 1.51677 1.58745 1.68335 2.37976 2.97428 3.03610 3.14429 3.62173 3.87377 3.93080 3.95162 4.01489 4.06141 4.10488 4.22961 4.30658 4.41839 4.47716 4.57855 4.65013 4.67087 4.75810 4.77443 4.82898 4.86746 4.90693 5.02067 5.07315 5.10631 5.15070 5.20739 5.23770 5.41663 5.41820 5.45991 5.55902 5.63232 5.80424 5.99333 6.20996 6.68850 6.73595 7.33507 7.46253 8.83554 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.023565 B = 0.003431 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.928312 B = 8159.419420 C = 8792.860719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C -0.022 4.022 4 C 0.187 3.813 5 N -0.505 5.505 6 C -0.008 4.008 7 C -0.068 4.068 8 C -0.052 4.052 9 C 0.131 3.869 10 N -0.510 5.510 11 C 0.048 3.952 12 C -0.110 4.110 13 C 0.237 3.763 14 O -0.594 6.594 15 C -0.560 4.560 16 H 0.059 0.941 17 C 0.028 3.972 18 N -0.912 5.912 19 Si 0.960 3.040 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.060 3.940 24 O -0.213 6.213 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.128 0.872 36 H 0.057 0.943 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.036 0.964 40 H 0.050 0.950 41 H 0.373 0.627 42 H 0.269 0.731 43 H 0.080 0.920 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 -11.971 -8.379 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.059 4.059 4 C -0.020 4.020 5 N -0.236 5.236 6 C -0.128 4.128 7 C -0.125 4.125 8 C -0.104 4.104 9 C 0.003 3.997 10 N -0.235 5.235 11 C -0.080 4.080 12 C -0.149 4.149 13 C 0.197 3.803 14 O -0.402 6.402 15 C -0.598 4.598 16 H 0.077 0.923 17 C -0.173 4.173 18 N -0.551 5.551 19 Si 0.786 3.214 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.194 1.194 23 C -0.067 4.067 24 O -0.101 6.101 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.145 0.855 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.222 0.778 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.254 -12.070 -9.788 19.790 hybrid contribution 0.509 0.530 2.791 2.887 sum -11.745 -11.540 -6.997 17.891 Atomic orbital electron populations 1.21731 0.92924 1.02848 1.02902 1.21482 0.97774 0.93701 1.02372 1.20415 0.78672 1.00518 1.06337 1.27028 0.97395 0.99305 0.78239 1.70333 1.02096 1.20087 1.31058 1.21900 0.93865 1.04556 0.92498 1.20184 0.91250 1.03647 0.97415 1.23129 0.83263 1.08831 0.95197 1.20682 0.90672 0.90973 0.97350 1.65437 1.03134 1.14208 1.40676 1.22958 0.94894 0.96257 0.93853 1.22647 0.97897 0.95762 0.98589 1.19475 0.87452 0.85622 0.87723 1.86125 1.77332 1.22969 1.53808 1.21967 1.40912 0.96522 1.00421 0.92320 1.25715 0.94667 0.94987 1.01932 1.69805 1.45818 1.00709 1.38811 0.85530 0.78481 0.78025 0.79404 1.20237 1.20793 1.19355 1.22956 0.91511 0.96709 0.95563 1.84372 1.17044 1.70266 1.38369 0.91594 0.91729 0.91567 0.91921 0.92158 0.87637 0.86571 0.89097 0.90668 0.90136 0.85462 0.92471 0.93961 0.92028 0.94526 0.93148 0.77814 0.92210 0.90173 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.11 -1.74 5.92 30.59 0.18 -1.56 16 3 C -0.02 -0.39 5.84 29.85 0.17 -0.21 16 4 C 0.19 5.21 7.60 88.34 0.67 5.88 16 5 N -0.51 -15.67 11.29 -291.98 -3.30 -18.96 16 6 C -0.01 -0.25 7.11 41.26 0.29 0.04 16 7 C -0.07 -1.66 10.05 71.24 0.72 -0.94 16 8 C -0.05 -1.63 6.38 24.79 0.16 -1.47 16 9 C 0.13 3.98 4.97 85.56 0.43 4.41 16 10 N -0.51 -19.30 5.36 -886.03 -4.75 -24.05 16 11 C 0.05 1.95 5.98 86.45 0.52 2.46 16 12 C -0.11 -5.27 5.55 31.49 0.17 -5.09 16 13 C 0.24 11.80 1.05 -10.65 -0.01 11.79 16 14 O -0.59 -31.76 12.94 -148.98 -1.93 -33.69 16 15 C -0.56 -29.64 8.08 25.60 0.21 -29.43 16 16 H 0.06 3.05 7.58 -2.91 -0.02 3.02 16 17 C 0.03 1.44 5.03 84.66 0.43 1.87 16 18 N -0.91 -49.04 10.82 21.45 0.23 -48.81 16 19 Si 0.96 41.73 29.54 68.60 2.03 43.76 16 20 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 23 C 0.06 2.48 5.76 86.45 0.50 2.97 16 24 O -0.21 -6.72 10.78 -3.75 -0.04 -6.76 16 25 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 33 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 2.02 7.79 -2.39 -0.02 2.00 16 35 H 0.13 3.22 7.78 -2.39 -0.02 3.20 16 36 H 0.06 1.68 7.88 -2.38 -0.02 1.66 16 37 H 0.04 1.63 7.82 -2.39 -0.02 1.62 16 38 H 0.06 2.46 8.12 -2.39 -0.02 2.44 16 39 H 0.04 1.83 7.98 -2.39 -0.02 1.81 16 40 H 0.05 2.58 7.24 -2.39 -0.02 2.56 16 41 H 0.37 20.43 7.33 -74.06 -0.54 19.88 16 42 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 43 H 0.08 3.26 8.08 -2.39 -0.02 3.24 16 44 H 0.06 2.25 7.56 -2.39 -0.02 2.23 16 Total: -1.00 -62.35 358.03 -2.17 -64.52 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: 0.44 Total: 34.10 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 5.14 Total: -10.11 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -7.82 Total: -91.82 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.97 Total: -40.46 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -62.35 -2.17 -64.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592155310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.528 kcal (2) G-P(sol) polarization free energy of solvation -62.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds