Wall clock time and date at job start Tue Mar 31 2020 07:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 H 1.08996 * 109.47362 * 305.00116 * 3 2 1 5 5 C 1.52995 * 109.47018 * 65.00213 * 3 2 1 6 6 C 1.53004 * 109.47012 * 185.00294 * 3 2 1 7 7 C 1.52994 * 109.47150 * 65.87937 * 6 3 2 8 8 H 1.08998 * 110.53480 * 306.87359 * 7 6 3 9 9 N 1.47311 * 110.60353 * 69.86803 * 7 6 3 10 10 C 1.34527 * 106.61774 * 118.30174 * 9 7 6 11 11 O 1.21544 * 123.76825 * 180.21203 * 10 9 7 12 12 N 1.33792 * 112.46201 * 0.38718 * 10 9 7 13 13 C 1.46500 * 124.17925 * 179.86124 * 12 10 9 14 14 C 1.52994 * 109.46841 * 273.59872 * 13 12 10 15 15 C 1.50700 * 115.54822 * 174.33626 * 14 13 12 16 16 H 1.08008 * 120.00309 * 219.37669 * 15 14 13 17 17 C 1.37880 * 119.99924 * 39.38025 * 15 14 13 18 18 N 1.31512 * 119.99991 * 5.76783 * 17 15 14 19 19 Si 1.86801 * 120.00064 * 185.77373 * 17 15 14 20 20 H 1.48500 * 109.46801 * 269.99496 * 19 17 15 21 21 H 1.48497 * 109.47123 * 29.99363 * 19 17 15 22 22 H 1.48497 * 109.47231 * 149.99461 * 19 17 15 23 23 C 1.53005 * 117.52379 * 320.03978 * 14 13 12 24 24 C 1.53005 * 117.50335 * 28.67380 * 14 13 12 25 25 C 1.34771 * 111.63757 * 359.59657 * 12 10 9 26 26 O 1.21235 * 127.15111 * 180.19444 * 25 12 10 27 27 H 1.09003 * 109.47492 * 59.99718 * 1 2 3 28 28 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46963 * 300.00160 * 1 2 3 30 30 H 1.09008 * 109.46670 * 240.00262 * 2 1 3 31 31 H 1.08993 * 109.47447 * 120.00314 * 2 1 3 32 32 H 1.09000 * 109.47160 * 64.77525 * 5 3 2 33 33 H 1.09000 * 109.47048 * 184.77565 * 5 3 2 34 34 H 1.08994 * 109.47490 * 304.77520 * 5 3 2 35 35 H 1.09002 * 109.46946 * 305.87579 * 6 3 2 36 36 H 1.08999 * 109.47005 * 185.87717 * 6 3 2 37 37 H 0.96996 * 126.69288 * 298.56712 * 9 7 6 38 38 H 1.09002 * 109.46903 * 153.60373 * 13 12 10 39 39 H 1.08992 * 109.46926 * 33.60651 * 13 12 10 40 40 H 0.96999 * 120.00142 * 175.00176 * 18 17 15 41 41 H 1.09000 * 117.49728 * 214.96658 * 23 14 13 42 42 H 1.08996 * 117.49224 * 359.97438 * 23 14 13 43 43 H 1.09003 * 117.49420 * 359.96524 * 24 14 13 44 44 H 1.08995 * 117.50231 * 144.97036 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 6 3.9641 0.8939 -1.4963 8 1 3.4995 -0.0769 -1.6687 9 7 3.5995 1.8430 -2.5624 10 6 4.7470 2.2058 -3.1635 11 8 4.8054 2.9888 -4.0912 12 7 5.8164 1.6055 -2.6285 13 6 7.1920 1.8126 -3.0877 14 6 7.4948 0.8531 -4.2402 15 6 8.8332 1.0401 -4.9071 16 1 8.9204 0.9441 -5.9794 17 6 9.9464 1.3337 -4.1484 18 7 9.8649 1.3389 -2.8358 19 14 11.5703 1.7244 -4.9849 20 1 12.3408 0.4700 -5.1801 21 1 11.3087 2.3549 -6.3037 22 1 12.3523 2.6587 -4.1360 23 6 6.9517 -0.5734 -4.1338 24 6 6.3227 0.4132 -5.1198 25 6 5.4721 0.7913 -1.6112 26 8 6.2142 0.1167 -0.9301 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.1378 1.6393 2.1430 33 1 1.9240 3.1770 1.2723 34 1 0.5559 2.0505 1.4382 35 1 3.9947 0.8185 0.6564 36 1 3.9369 2.4634 -0.0211 37 1 2.7066 2.1497 -2.7847 38 1 7.8820 1.6221 -2.2656 39 1 7.3099 2.8406 -3.4301 40 1 10.6628 1.4737 -2.3009 41 1 7.5625 -1.3765 -4.5462 42 1 6.3789 -0.8286 -3.2423 43 1 5.3357 0.8070 -4.8769 44 1 6.5195 0.2594 -6.1807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592458415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:13 Heat of formation + Delta-G solvation = -32.340611 kcal Electronic energy + Delta-G solvation = -24968.690448 eV Core-core repulsion = 21501.394704 eV Total energy + Delta-G solvation = -3467.295744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.04870 -38.10400 -37.74305 -36.51786 -35.44613 -33.40332 -32.16579 -30.91187 -28.95289 -27.11908 -25.58202 -24.81174 -23.48516 -22.15034 -21.02691 -20.56225 -19.98960 -18.75280 -17.48211 -17.01978 -16.28830 -15.85625 -15.43624 -15.05323 -14.90699 -14.75570 -14.45271 -14.18479 -13.69024 -13.61062 -13.51435 -12.92667 -12.52493 -12.32855 -12.29805 -12.05233 -11.95937 -11.71754 -11.55191 -11.03409 -10.98246 -10.83410 -10.77310 -10.69275 -10.49943 -10.34571 -10.16196 -10.01290 -9.62822 -9.22809 -9.05395 -8.89726 -8.56174 -8.07884 -6.10384 -4.15134 2.10738 2.80352 3.27237 3.34390 3.38928 3.49979 3.57591 4.25828 4.35118 4.49367 4.52336 4.69309 4.79547 4.98747 5.03486 5.20500 5.27774 5.34893 5.45274 5.49933 5.51057 5.62322 5.73975 5.76443 5.82398 5.86094 5.95356 6.08330 6.11722 6.14812 6.27709 6.43753 6.45764 6.73211 6.79529 6.99442 7.06622 7.11820 7.34788 7.51168 7.74171 7.90235 7.95439 8.32837 8.63955 8.83170 9.45943 10.93336 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.003990 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.085690 B = 7015.576282 C = 7203.632295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.149 4.149 6 C -0.114 4.114 7 C 0.089 3.911 8 H 0.120 0.880 9 N -0.734 5.734 10 C 0.698 3.302 11 O -0.542 6.542 12 N -0.566 5.566 13 C 0.150 3.850 14 C 0.045 3.955 15 C -0.485 4.485 16 H 0.065 0.935 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.902 3.098 20 H -0.280 1.280 21 H -0.272 1.272 22 H -0.284 1.284 23 C -0.200 4.200 24 C -0.206 4.206 25 C 0.520 3.480 26 O -0.462 6.462 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.431 0.569 38 H 0.140 0.860 39 H 0.077 0.923 40 H 0.266 0.734 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.124 -0.398 8.339 19.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.206 4.206 6 C -0.153 4.153 7 C -0.020 4.020 8 H 0.138 0.862 9 N -0.399 5.399 10 C 0.399 3.601 11 O -0.415 6.415 12 N -0.311 5.311 13 C 0.032 3.968 14 C 0.044 3.956 15 C -0.523 4.523 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.523 5.523 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.197 1.197 22 H -0.210 1.210 23 C -0.238 4.238 24 C -0.243 4.243 25 C 0.305 3.695 26 O -0.331 6.331 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.274 0.726 38 H 0.157 0.843 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.401 -0.228 8.349 18.405 hybrid contribution 0.348 0.118 -0.580 0.686 sum -16.053 -0.111 7.769 17.835 Atomic orbital electron populations 1.21825 0.95849 1.01580 1.01823 1.21689 0.95952 0.96216 1.02524 1.21142 0.94255 0.96558 0.98842 0.91047 1.21868 1.01423 1.00390 0.96897 1.21864 0.96411 1.02686 0.94339 1.22164 0.94205 0.95605 0.90047 0.86216 1.45587 1.08645 1.49156 1.36518 1.16036 0.81137 0.80851 0.82063 1.90989 1.85206 1.36847 1.28506 1.46894 1.10934 1.41283 1.31941 1.21947 0.74291 0.99753 1.00792 1.19250 0.92300 0.90633 0.93417 1.20518 0.90411 1.47883 0.93447 0.91644 1.25040 0.99349 0.94264 0.94908 1.69688 1.29235 1.49281 1.04070 0.86410 0.82776 0.78373 0.79491 1.20556 1.19655 1.20950 1.22958 1.04980 0.96573 0.99316 1.22907 0.97826 1.07122 0.96430 1.20660 0.89887 0.79049 0.79864 1.90803 1.58576 1.38590 1.45150 0.92803 0.92841 0.92525 0.91677 0.91527 0.92449 0.92645 0.92252 0.89303 0.90559 0.72558 0.84265 0.90449 0.92368 0.90371 0.92156 0.91581 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.67 37.16 0.36 -0.62 16 2 C -0.13 -0.91 5.29 -26.73 -0.14 -1.05 16 3 C -0.09 -0.68 2.35 -90.62 -0.21 -0.89 16 4 H 0.07 0.52 7.42 -51.93 -0.39 0.13 16 5 C -0.15 -1.03 9.05 37.15 0.34 -0.70 16 6 C -0.11 -1.14 4.42 -26.73 -0.12 -1.26 16 7 C 0.09 1.12 3.53 -68.21 -0.24 0.87 16 8 H 0.12 1.29 6.30 -51.93 -0.33 0.96 16 9 N -0.73 -9.60 6.01 -59.20 -0.36 -9.96 16 10 C 0.70 13.04 6.64 -88.02 -0.58 12.46 16 11 O -0.54 -11.96 16.98 5.33 0.09 -11.87 16 12 N -0.57 -11.48 1.87 -120.73 -0.23 -11.71 16 13 C 0.15 3.67 5.09 -4.04 -0.02 3.65 16 14 C 0.05 1.16 2.34 -155.66 -0.36 0.80 16 15 C -0.48 -13.39 9.03 -34.44 -0.31 -13.71 16 16 H 0.07 1.80 7.82 -52.48 -0.41 1.39 16 17 C 0.07 1.81 5.31 -17.82 -0.09 1.72 16 18 N -0.89 -24.46 10.77 55.43 0.60 -23.87 16 19 Si 0.90 20.95 29.54 -169.99 -5.02 15.92 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.20 -4.82 9.64 -26.72 -0.26 -5.07 16 24 C -0.21 -4.82 9.53 -26.72 -0.25 -5.07 16 25 C 0.52 9.47 6.14 -10.55 -0.06 9.41 16 26 O -0.46 -9.77 17.29 5.60 0.10 -9.68 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.34 6.47 -51.93 -0.34 0.00 16 30 H 0.06 0.49 6.28 -51.92 -0.33 0.16 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.36 6.35 -51.93 -0.33 0.03 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.43 4.33 8.44 -40.82 -0.34 3.99 16 38 H 0.14 3.70 5.78 -51.93 -0.30 3.40 16 39 H 0.08 1.96 7.94 -51.93 -0.41 1.55 16 40 H 0.27 7.00 8.32 -40.82 -0.34 6.66 16 41 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 42 H 0.06 1.40 6.03 -51.93 -0.31 1.09 16 43 H 0.07 1.49 5.24 -51.93 -0.27 1.22 16 44 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -31.09 347.49 -8.25 -39.34 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.70 Total: 6.04 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.97 Total: 0.54 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.02 Total: -45.53 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: 0.19 Total: -21.55 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.09 -8.25 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592458415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.003 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds