Wall clock time and date at job start Tue Mar 31 2020 07:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47253 * 2 1 4 4 H 1.08996 * 109.47362 * 305.00116 * 3 2 1 5 5 C 1.52995 * 109.47018 * 65.00213 * 3 2 1 6 6 C 1.53004 * 109.47012 * 185.00294 * 3 2 1 7 7 C 1.52994 * 109.47150 * 65.87937 * 6 3 2 8 8 H 1.08998 * 110.53480 * 306.87359 * 7 6 3 9 9 N 1.47311 * 110.60353 * 69.86803 * 7 6 3 10 10 C 1.34527 * 106.61774 * 118.30174 * 9 7 6 11 11 O 1.21544 * 123.76825 * 180.21203 * 10 9 7 12 12 N 1.33792 * 112.46201 * 0.38718 * 10 9 7 13 13 C 1.46500 * 124.17925 * 179.86124 * 12 10 9 14 14 C 1.52994 * 109.46841 * 273.59872 * 13 12 10 15 15 C 1.50700 * 115.54822 * 174.33626 * 14 13 12 16 16 H 1.08008 * 120.00309 * 219.37669 * 15 14 13 17 17 C 1.37880 * 119.99924 * 39.38025 * 15 14 13 18 18 N 1.31512 * 119.99991 * 5.76783 * 17 15 14 19 19 Si 1.86801 * 120.00064 * 185.77373 * 17 15 14 20 20 H 1.48500 * 109.46801 * 269.99496 * 19 17 15 21 21 H 1.48497 * 109.47123 * 29.99363 * 19 17 15 22 22 H 1.48497 * 109.47231 * 149.99461 * 19 17 15 23 23 C 1.53005 * 117.52379 * 320.03978 * 14 13 12 24 24 C 1.53005 * 117.50335 * 28.67380 * 14 13 12 25 25 C 1.34771 * 111.63757 * 359.59657 * 12 10 9 26 26 O 1.21235 * 127.15111 * 180.19444 * 25 12 10 27 27 H 1.09003 * 109.47492 * 59.99718 * 1 2 3 28 28 H 1.09000 * 109.47128 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46963 * 300.00160 * 1 2 3 30 30 H 1.09008 * 109.46670 * 240.00262 * 2 1 3 31 31 H 1.08993 * 109.47447 * 120.00314 * 2 1 3 32 32 H 1.09000 * 109.47160 * 64.77525 * 5 3 2 33 33 H 1.09000 * 109.47048 * 184.77565 * 5 3 2 34 34 H 1.08994 * 109.47490 * 304.77520 * 5 3 2 35 35 H 1.09002 * 109.46946 * 305.87579 * 6 3 2 36 36 H 1.08999 * 109.47005 * 185.87717 * 6 3 2 37 37 H 0.96996 * 126.69288 * 298.56712 * 9 7 6 38 38 H 1.09002 * 109.46903 * 153.60373 * 13 12 10 39 39 H 1.08992 * 109.46926 * 33.60651 * 13 12 10 40 40 H 0.96999 * 120.00142 * 175.00176 * 18 17 15 41 41 H 1.09000 * 117.49728 * 214.96658 * 23 14 13 42 42 H 1.08996 * 117.49224 * 359.97438 * 23 14 13 43 43 H 1.09003 * 117.49420 * 359.96524 * 24 14 13 44 44 H 1.08995 * 117.50231 * 144.97036 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5649 1.4442 -0.1258 7 6 3.9641 0.8939 -1.4963 8 1 3.4995 -0.0769 -1.6687 9 7 3.5995 1.8430 -2.5624 10 6 4.7470 2.2058 -3.1635 11 8 4.8054 2.9888 -4.0912 12 7 5.8164 1.6055 -2.6285 13 6 7.1920 1.8126 -3.0877 14 6 7.4948 0.8531 -4.2402 15 6 8.8332 1.0401 -4.9071 16 1 8.9204 0.9441 -5.9794 17 6 9.9464 1.3337 -4.1484 18 7 9.8649 1.3389 -2.8358 19 14 11.5703 1.7244 -4.9849 20 1 12.3408 0.4700 -5.1801 21 1 11.3087 2.3549 -6.3037 22 1 12.3523 2.6587 -4.1360 23 6 6.9517 -0.5734 -4.1338 24 6 6.3227 0.4132 -5.1198 25 6 5.4721 0.7913 -1.6112 26 8 6.2142 0.1167 -0.9301 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 2.1378 1.6393 2.1430 33 1 1.9240 3.1770 1.2723 34 1 0.5559 2.0505 1.4382 35 1 3.9947 0.8185 0.6564 36 1 3.9369 2.4634 -0.0211 37 1 2.7066 2.1497 -2.7847 38 1 7.8820 1.6221 -2.2656 39 1 7.3099 2.8406 -3.4301 40 1 10.6628 1.4737 -2.3009 41 1 7.5625 -1.3765 -4.5462 42 1 6.3789 -0.8286 -3.2423 43 1 5.3357 0.8070 -4.8769 44 1 6.5195 0.2594 -6.1807 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592458415.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:13 Heat of formation + Delta-G solvation = -51.374297 kcal Electronic energy + Delta-G solvation = -24969.515811 eV Core-core repulsion = 21501.394704 eV Total energy + Delta-G solvation = -3468.121107 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.50916 -39.60200 -38.98659 -38.03869 -36.83198 -34.87762 -34.21338 -31.67475 -29.79173 -28.87214 -27.52946 -25.90505 -24.36284 -23.50352 -22.84607 -22.09755 -20.90137 -20.35892 -18.90733 -18.71361 -17.91503 -17.35335 -16.82609 -16.49938 -16.16730 -15.91172 -15.84055 -15.39069 -15.29905 -14.98049 -14.41686 -14.26291 -14.01260 -13.80472 -13.52223 -13.09286 -12.95729 -12.85654 -12.73428 -12.71064 -12.41710 -12.32745 -12.16005 -11.98069 -11.86738 -11.61256 -11.39661 -11.31677 -11.17126 -10.94578 -10.84698 -10.52194 -10.31402 -10.08223 -8.15585 -6.28773 0.65696 1.34040 1.43823 1.44547 1.55303 2.05614 2.24968 2.39454 2.94281 3.00829 3.50164 3.61826 3.77933 3.97686 4.04100 4.14792 4.24699 4.34592 4.44458 4.53684 4.63322 4.64652 4.67892 4.78782 4.81692 4.81761 4.84679 4.88228 4.99528 5.09427 5.20503 5.22760 5.25450 5.30664 5.33549 5.41655 5.51533 5.57597 5.61533 5.78283 5.87610 6.24570 6.27491 6.50011 6.72018 7.19758 7.35401 8.86718 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029036 B = 0.003990 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.085690 B = 7015.576282 C = 7203.632295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.082 4.082 4 H 0.081 0.919 5 C -0.148 4.148 6 C -0.109 4.109 7 C 0.107 3.893 8 H 0.153 0.847 9 N -0.701 5.701 10 C 0.695 3.305 11 O -0.580 6.580 12 N -0.577 5.577 13 C 0.168 3.832 14 C 0.015 3.985 15 C -0.513 4.513 16 H 0.058 0.942 17 C 0.025 3.975 18 N -0.907 5.907 19 Si 0.966 3.034 20 H -0.274 1.274 21 H -0.269 1.269 22 H -0.278 1.278 23 C -0.192 4.192 24 C -0.186 4.186 25 C 0.510 3.490 26 O -0.497 6.497 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.451 0.549 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.268 0.732 41 H 0.072 0.928 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.043 -0.697 8.707 20.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.101 4.101 4 H 0.100 0.900 5 C -0.205 4.205 6 C -0.147 4.147 7 C -0.001 4.001 8 H 0.170 0.830 9 N -0.368 5.368 10 C 0.396 3.604 11 O -0.457 6.457 12 N -0.321 5.321 13 C 0.047 3.953 14 C 0.014 3.986 15 C -0.551 4.551 16 H 0.076 0.924 17 C -0.175 4.175 18 N -0.544 5.544 19 Si 0.791 3.209 20 H -0.200 1.200 21 H -0.194 1.194 22 H -0.203 1.203 23 C -0.230 4.230 24 C -0.224 4.224 25 C 0.299 3.701 26 O -0.368 6.368 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.298 0.702 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.399 -0.540 8.741 20.376 hybrid contribution 0.910 0.194 -0.641 1.130 sum -17.489 -0.346 8.100 19.276 Atomic orbital electron populations 1.21816 0.95078 1.01846 1.02241 1.21704 0.96627 0.95648 1.02515 1.21115 0.91967 0.97275 0.99714 0.90040 1.21863 1.02181 1.00114 0.96374 1.21893 0.98433 1.02102 0.92293 1.22289 0.89621 0.97009 0.91181 0.83043 1.45391 1.07921 1.48063 1.35392 1.16101 0.81918 0.80487 0.81894 1.90965 1.85828 1.38512 1.30347 1.46829 1.10097 1.42302 1.32893 1.21297 0.76436 0.98142 0.99412 1.19394 0.92657 0.91852 0.94744 1.20776 0.91954 1.48984 0.93372 0.92393 1.25771 1.02477 0.93829 0.95463 1.69833 1.30032 1.49458 1.05110 0.85426 0.78742 0.78275 0.78496 1.19953 1.19406 1.20336 1.22864 1.04748 0.95659 0.99708 1.22849 0.97464 1.05825 0.96219 1.21587 0.92324 0.77722 0.78516 1.90779 1.60243 1.39806 1.46019 0.92439 0.92720 0.92079 0.91685 0.91605 0.92564 0.92874 0.91087 0.89132 0.91208 0.70194 0.86805 0.92649 0.92282 0.90925 0.91511 0.90557 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 71.98 0.70 -0.76 16 2 C -0.13 -1.42 5.29 30.59 0.16 -1.25 16 3 C -0.08 -0.98 2.35 -10.79 -0.03 -1.01 16 4 H 0.08 0.85 7.42 -2.39 -0.02 0.83 16 5 C -0.15 -1.64 9.05 71.98 0.65 -0.99 16 6 C -0.11 -1.91 4.42 30.59 0.14 -1.78 16 7 C 0.11 2.43 3.53 44.37 0.16 2.58 16 8 H 0.15 2.68 6.30 -2.39 -0.02 2.67 16 9 N -0.70 -16.62 6.01 -459.62 -2.76 -19.38 16 10 C 0.69 25.42 6.64 179.44 1.19 26.61 16 11 O -0.58 -25.51 16.98 -3.85 -0.07 -25.58 16 12 N -0.58 -23.53 1.87 -773.13 -1.45 -24.97 16 13 C 0.17 8.46 5.09 86.38 0.44 8.90 16 14 C 0.01 0.77 2.34 -52.93 -0.12 0.65 16 15 C -0.51 -28.98 9.03 25.60 0.23 -28.75 16 16 H 0.06 3.25 7.82 -2.91 -0.02 3.23 16 17 C 0.03 1.38 5.31 84.66 0.45 1.83 16 18 N -0.91 -51.32 10.77 21.45 0.23 -51.09 16 19 Si 0.97 43.45 29.54 68.60 2.03 45.48 16 20 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 C -0.19 -9.26 9.64 30.60 0.29 -8.96 16 24 C -0.19 -8.70 9.53 30.60 0.29 -8.41 16 25 C 0.51 18.33 6.14 87.94 0.54 18.87 16 26 O -0.50 -21.18 17.29 -2.89 -0.05 -21.23 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.53 6.47 -2.38 -0.02 0.52 16 30 H 0.06 0.73 6.28 -2.38 -0.01 0.71 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.65 6.35 -2.39 -0.02 0.63 16 35 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.45 7.49 8.44 -92.71 -0.78 6.71 16 38 H 0.11 6.33 5.78 -2.39 -0.01 6.32 16 39 H 0.06 2.95 7.94 -2.39 -0.02 2.93 16 40 H 0.27 14.35 8.32 -92.71 -0.77 13.58 16 41 H 0.07 3.54 8.14 -2.39 -0.02 3.52 16 42 H 0.07 3.09 6.03 -2.39 -0.01 3.08 16 43 H 0.08 3.38 5.24 -2.39 -0.01 3.37 16 44 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 Total: -1.00 -68.90 347.49 3.26 -65.65 By element: Atomic # 1 Polarization: 23.38 SS G_CDS: 0.23 Total: 23.61 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: 5.09 Total: 7.52 kcal Atomic # 7 Polarization: -91.47 SS G_CDS: -3.98 Total: -95.45 kcal Atomic # 8 Polarization: -46.69 SS G_CDS: -0.12 Total: -46.81 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -68.90 3.26 -65.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592458415.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.275 kcal (2) G-P(sol) polarization free energy of solvation -68.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds