Wall clock time and date at job start Tue Mar 31 2020 07:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47154 * 2 1 4 4 H 1.09003 * 109.47214 * 55.00335 * 3 2 1 5 5 C 1.52995 * 109.47580 * 295.00341 * 3 2 1 6 6 C 1.53000 * 109.46898 * 175.00113 * 3 2 1 7 7 C 1.53003 * 109.47265 * 294.16172 * 6 3 2 8 8 H 1.09000 * 110.53075 * 57.20084 * 7 6 3 9 9 N 1.47309 * 110.59832 * 294.37402 * 7 6 3 10 10 C 1.34530 * 106.61583 * 241.47060 * 9 7 6 11 11 O 1.21538 * 123.76746 * 180.02562 * 10 9 7 12 12 N 1.33793 * 112.45916 * 359.97438 * 10 9 7 13 13 C 1.46498 * 124.17459 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47192 * 84.42045 * 13 12 10 15 15 C 1.50700 * 115.54844 * 39.61766 * 14 13 12 16 16 H 1.08007 * 119.99918 * 269.26433 * 15 14 13 17 17 C 1.37874 * 120.00356 * 89.26628 * 15 14 13 18 18 N 1.31511 * 120.00305 * 180.15784 * 17 15 14 19 19 Si 1.86801 * 120.00057 * 0.15945 * 17 15 14 20 20 H 1.48500 * 109.46924 * 92.15282 * 19 17 15 21 21 H 1.48502 * 109.47171 * 212.15773 * 19 17 15 22 22 H 1.48503 * 109.47036 * 332.15467 * 19 17 15 23 23 C 1.53001 * 117.50126 * 253.90624 * 14 13 12 24 24 C 1.53003 * 60.00092 * 252.50936 * 23 14 13 25 25 C 1.34760 * 111.64405 * 0.02562 * 12 10 9 26 26 O 1.21237 * 127.15829 * 180.02562 * 25 12 10 27 27 H 1.09001 * 109.47547 * 59.99503 * 1 2 3 28 28 H 1.08999 * 109.47715 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47102 * 299.99905 * 1 2 3 30 30 H 1.09001 * 109.46619 * 240.00097 * 2 1 3 31 31 H 1.08998 * 109.47047 * 120.00463 * 2 1 3 32 32 H 1.09002 * 109.47225 * 65.63284 * 5 3 2 33 33 H 1.08998 * 109.47349 * 185.63927 * 5 3 2 34 34 H 1.09004 * 109.46906 * 305.63498 * 5 3 2 35 35 H 1.08997 * 109.47400 * 54.16447 * 6 3 2 36 36 H 1.08997 * 109.47252 * 174.16560 * 6 3 2 37 37 H 0.96997 * 126.69240 * 61.51463 * 9 7 6 38 38 H 1.09006 * 109.47063 * 204.42483 * 13 12 10 39 39 H 1.08998 * 109.47162 * 324.41629 * 13 12 10 40 40 H 0.96996 * 120.00765 * 179.97438 * 18 17 15 41 41 H 1.09000 * 117.49432 * 0.02562 * 23 14 13 42 42 H 1.08992 * 117.49796 * 145.01894 * 23 14 13 43 43 H 1.09001 * 117.49911 * 252.51115 * 24 23 14 44 44 H 1.09002 * 117.49852 * 107.48311 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4442 0.1257 7 6 3.9643 0.8928 1.4959 8 1 3.5585 -0.1088 1.6380 9 7 3.5097 1.7933 2.5695 10 6 4.6143 2.2145 3.2116 11 8 4.5960 2.9758 4.1589 12 7 5.7350 1.7009 2.6917 13 6 7.0813 1.9875 3.1930 14 6 7.3996 1.0539 4.3626 15 6 6.9204 -0.3666 4.2093 16 1 5.9419 -0.6483 4.5695 17 6 7.7310 -1.3067 3.6092 18 7 7.3116 -2.5456 3.4726 19 14 9.4251 -0.8206 2.9903 20 1 10.4301 -1.0640 4.0561 21 1 9.7663 -1.6311 1.7936 22 1 9.4257 0.6198 2.6291 23 6 7.3899 1.6553 5.7695 24 6 8.7169 1.2785 5.1076 25 6 5.4722 0.8874 1.6500 26 8 6.2749 0.2774 0.9766 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.5496 2.2149 -1.3501 33 1 2.0826 3.1195 -1.3514 34 1 1.9851 1.5326 -2.1516 35 1 3.9946 0.8190 -0.6569 36 1 3.9368 2.4635 0.0218 37 1 2.5928 2.0348 2.7739 38 1 7.8072 1.8308 2.3950 39 1 7.1306 3.0228 3.5306 40 1 7.8817 -3.2069 3.0501 41 1 7.1564 2.7160 5.8617 42 1 7.0367 1.0235 6.5844 43 1 9.2368 0.3989 5.4872 44 1 9.3569 2.0915 4.7645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592458417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:20 Heat of formation + Delta-G solvation = -32.514682 kcal Electronic energy + Delta-G solvation = -25236.851815 eV Core-core repulsion = 21769.548522 eV Total energy + Delta-G solvation = -3467.303293 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.81874 -37.93540 -37.62876 -36.80224 -35.30980 -33.59740 -32.04340 -30.81072 -28.84710 -27.36711 -25.52759 -24.74103 -23.33788 -21.96675 -21.56657 -20.43493 -19.87285 -18.85399 -17.53248 -16.53885 -16.36772 -15.82200 -15.30230 -14.98181 -14.80052 -14.56562 -14.52887 -14.18231 -13.69898 -13.45136 -13.30753 -12.97584 -12.75353 -12.46584 -12.29882 -12.27173 -12.10829 -11.87958 -11.60252 -11.09977 -10.92214 -10.72924 -10.61880 -10.59148 -10.50573 -10.35023 -10.21346 -9.70107 -9.46600 -9.13295 -9.01226 -8.84925 -8.45660 -8.44045 -6.07883 -4.11878 2.34239 2.83666 3.35081 3.45501 3.46891 3.59551 3.74727 4.39779 4.48686 4.61864 4.62947 4.83546 4.92531 4.96429 5.20103 5.24488 5.31147 5.38419 5.44953 5.56562 5.61319 5.66841 5.75242 5.83073 5.84582 5.93130 5.95915 6.04035 6.07692 6.08611 6.17435 6.22325 6.25965 6.37098 6.52392 6.54893 6.78384 7.05318 7.16549 7.17051 7.72239 7.79367 8.13507 8.50998 8.72797 8.92017 9.56748 11.03739 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.005358 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.499817 B = 5224.782402 C = 5871.629697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.089 4.089 4 H 0.071 0.929 5 C -0.147 4.147 6 C -0.114 4.114 7 C 0.093 3.907 8 H 0.124 0.876 9 N -0.730 5.730 10 C 0.708 3.292 11 O -0.554 6.554 12 N -0.547 5.547 13 C 0.152 3.848 14 C -0.019 4.019 15 C -0.488 4.488 16 H 0.071 0.929 17 C 0.089 3.911 18 N -0.893 5.893 19 Si 0.887 3.113 20 H -0.283 1.283 21 H -0.295 1.295 22 H -0.260 1.260 23 C -0.169 4.169 24 C -0.197 4.197 25 C 0.535 3.465 26 O -0.458 6.458 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.431 0.569 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.264 0.736 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.737 8.452 -8.556 16.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.204 4.204 6 C -0.152 4.152 7 C -0.016 4.016 8 H 0.141 0.859 9 N -0.395 5.395 10 C 0.409 3.591 11 O -0.429 6.429 12 N -0.290 5.290 13 C 0.031 3.969 14 C -0.021 4.021 15 C -0.525 4.525 16 H 0.089 0.911 17 C -0.114 4.114 18 N -0.529 5.529 19 Si 0.716 3.284 20 H -0.210 1.210 21 H -0.222 1.222 22 H -0.185 1.185 23 C -0.206 4.206 24 C -0.235 4.235 25 C 0.321 3.679 26 O -0.327 6.327 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.091 0.909 37 H 0.274 0.726 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.095 0.905 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.117 8.336 -8.479 15.612 hybrid contribution 0.546 0.005 -0.103 0.556 sum -9.571 8.341 -8.582 15.324 Atomic orbital electron populations 1.21804 0.95905 1.01585 1.01666 1.21704 0.95902 0.96103 1.02777 1.21136 0.94311 0.96644 0.98696 0.91045 1.21851 1.01230 1.00323 0.96973 1.21856 0.96422 1.02326 0.94622 1.22125 0.93293 0.96833 0.89376 0.85859 1.45473 1.08257 1.50990 1.34749 1.15832 0.81016 0.80319 0.81928 1.90930 1.85719 1.38525 1.27690 1.45910 1.08549 1.43718 1.30833 1.21435 0.79214 0.98136 0.98154 1.19723 0.96935 0.96446 0.88964 1.20043 1.03541 0.88858 1.40020 0.91093 1.24892 0.98077 0.94418 0.94028 1.69864 1.37450 1.02499 1.43132 0.86751 0.84477 0.79321 0.77889 1.20972 1.22165 1.18494 1.22846 1.00409 0.99216 0.98176 1.22943 0.91259 1.02024 1.07260 1.20402 0.90104 0.77696 0.79661 1.90756 1.54162 1.40400 1.47360 0.92703 0.92834 0.92831 0.91556 0.91406 0.92439 0.92728 0.92503 0.89346 0.90886 0.72572 0.89637 0.91019 0.92614 0.90545 0.89754 0.89332 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.13 -1.12 5.29 -26.74 -0.14 -1.26 16 3 C -0.09 -0.77 2.34 -90.63 -0.21 -0.98 16 4 H 0.07 0.59 7.18 -51.93 -0.37 0.21 16 5 C -0.15 -1.11 8.80 37.15 0.33 -0.79 16 6 C -0.11 -1.25 4.44 -26.73 -0.12 -1.37 16 7 C 0.09 1.34 3.49 -68.20 -0.24 1.10 16 8 H 0.12 1.74 6.45 -51.93 -0.33 1.41 16 9 N -0.73 -10.38 5.94 -59.19 -0.35 -10.74 16 10 C 0.71 13.40 8.62 -88.01 -0.76 12.64 16 11 O -0.55 -11.87 17.56 5.33 0.09 -11.78 16 12 N -0.55 -11.10 2.12 -120.73 -0.26 -11.36 16 13 C 0.15 3.24 5.63 -4.04 -0.02 3.21 16 14 C -0.02 -0.45 1.21 -155.66 -0.19 -0.64 16 15 C -0.49 -13.50 8.26 -34.44 -0.28 -13.79 16 16 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 17 C 0.09 2.56 5.47 -17.82 -0.10 2.46 16 18 N -0.89 -27.11 13.96 55.43 0.77 -26.34 16 19 Si 0.89 22.55 24.95 -169.99 -4.24 18.30 16 20 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.26 -6.23 5.45 56.52 0.31 -5.92 16 23 C -0.17 -3.64 9.88 -26.73 -0.26 -3.91 16 24 C -0.20 -4.26 7.40 -26.73 -0.20 -4.45 16 25 C 0.54 10.56 7.02 -10.56 -0.07 10.49 16 26 O -0.46 -10.51 17.68 5.59 0.10 -10.41 16 27 H 0.05 0.38 6.69 -51.93 -0.35 0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.66 6.35 -51.93 -0.33 0.33 16 32 H 0.06 0.39 6.85 -51.93 -0.36 0.04 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.43 4.79 8.26 -40.82 -0.34 4.46 16 38 H 0.09 1.85 6.47 -51.93 -0.34 1.51 16 39 H 0.07 1.39 7.79 -51.93 -0.40 0.98 16 40 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 41 H 0.08 1.53 8.08 -51.93 -0.42 1.11 16 42 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 43 H 0.09 2.01 6.93 -51.93 -0.36 1.65 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 350.10 15.07 5.28 5.28 Total: -1.00 -33.09 350.10 -7.57 -40.66 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -7.05 Total: 4.48 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -1.91 Total: 1.91 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.17 Total: -48.44 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: 0.19 Total: -22.19 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.24 Total: 18.30 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.09 -7.57 -40.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592458417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.145 kcal (2) G-P(sol) polarization free energy of solvation -33.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds