Wall clock time and date at job start Tue Mar 31 2020 07:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47154 * 2 1 4 4 H 1.09003 * 109.47214 * 55.00335 * 3 2 1 5 5 C 1.52995 * 109.47580 * 295.00341 * 3 2 1 6 6 C 1.53000 * 109.46898 * 175.00113 * 3 2 1 7 7 C 1.53003 * 109.47265 * 294.16172 * 6 3 2 8 8 H 1.09000 * 110.53075 * 57.20084 * 7 6 3 9 9 N 1.47309 * 110.59832 * 294.37402 * 7 6 3 10 10 C 1.34530 * 106.61583 * 241.47060 * 9 7 6 11 11 O 1.21538 * 123.76746 * 180.02562 * 10 9 7 12 12 N 1.33793 * 112.45916 * 359.97438 * 10 9 7 13 13 C 1.46498 * 124.17459 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47192 * 84.42045 * 13 12 10 15 15 C 1.50700 * 115.54844 * 39.61766 * 14 13 12 16 16 H 1.08007 * 119.99918 * 269.26433 * 15 14 13 17 17 C 1.37874 * 120.00356 * 89.26628 * 15 14 13 18 18 N 1.31511 * 120.00305 * 180.15784 * 17 15 14 19 19 Si 1.86801 * 120.00057 * 0.15945 * 17 15 14 20 20 H 1.48500 * 109.46924 * 92.15282 * 19 17 15 21 21 H 1.48502 * 109.47171 * 212.15773 * 19 17 15 22 22 H 1.48503 * 109.47036 * 332.15467 * 19 17 15 23 23 C 1.53001 * 117.50126 * 253.90624 * 14 13 12 24 24 C 1.53003 * 60.00092 * 252.50936 * 23 14 13 25 25 C 1.34760 * 111.64405 * 0.02562 * 12 10 9 26 26 O 1.21237 * 127.15829 * 180.02562 * 25 12 10 27 27 H 1.09001 * 109.47547 * 59.99503 * 1 2 3 28 28 H 1.08999 * 109.47715 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.47102 * 299.99905 * 1 2 3 30 30 H 1.09001 * 109.46619 * 240.00097 * 2 1 3 31 31 H 1.08998 * 109.47047 * 120.00463 * 2 1 3 32 32 H 1.09002 * 109.47225 * 65.63284 * 5 3 2 33 33 H 1.08998 * 109.47349 * 185.63927 * 5 3 2 34 34 H 1.09004 * 109.46906 * 305.63498 * 5 3 2 35 35 H 1.08997 * 109.47400 * 54.16447 * 6 3 2 36 36 H 1.08997 * 109.47252 * 174.16560 * 6 3 2 37 37 H 0.96997 * 126.69240 * 61.51463 * 9 7 6 38 38 H 1.09006 * 109.47063 * 204.42483 * 13 12 10 39 39 H 1.08998 * 109.47162 * 324.41629 * 13 12 10 40 40 H 0.96996 * 120.00765 * 179.97438 * 18 17 15 41 41 H 1.09000 * 117.49432 * 0.02562 * 23 14 13 42 42 H 1.08992 * 117.49796 * 145.01894 * 23 14 13 43 43 H 1.09001 * 117.49911 * 252.51115 * 24 23 14 44 44 H 1.09002 * 117.49852 * 107.48311 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 1.6352 2.1266 -1.3072 6 6 3.5648 1.4442 0.1257 7 6 3.9643 0.8928 1.4959 8 1 3.5585 -0.1088 1.6380 9 7 3.5097 1.7933 2.5695 10 6 4.6143 2.2145 3.2116 11 8 4.5960 2.9758 4.1589 12 7 5.7350 1.7009 2.6917 13 6 7.0813 1.9875 3.1930 14 6 7.3996 1.0539 4.3626 15 6 6.9204 -0.3666 4.2093 16 1 5.9419 -0.6483 4.5695 17 6 7.7310 -1.3067 3.6092 18 7 7.3116 -2.5456 3.4726 19 14 9.4251 -0.8206 2.9903 20 1 10.4301 -1.0640 4.0561 21 1 9.7663 -1.6311 1.7936 22 1 9.4257 0.6198 2.6291 23 6 7.3899 1.6553 5.7695 24 6 8.7169 1.2785 5.1076 25 6 5.4722 0.8874 1.6500 26 8 6.2749 0.2774 0.9766 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 0.5496 2.2149 -1.3501 33 1 2.0826 3.1195 -1.3514 34 1 1.9851 1.5326 -2.1516 35 1 3.9946 0.8190 -0.6569 36 1 3.9368 2.4635 0.0218 37 1 2.5928 2.0348 2.7739 38 1 7.8072 1.8308 2.3950 39 1 7.1306 3.0228 3.5306 40 1 7.8817 -3.2069 3.0501 41 1 7.1564 2.7160 5.8617 42 1 7.0367 1.0235 6.5844 43 1 9.2368 0.3989 5.4872 44 1 9.3569 2.0915 4.7645 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592458417.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:19 Heat of formation + Delta-G solvation = -54.282524 kcal Electronic energy + Delta-G solvation = -25237.795739 eV Core-core repulsion = 21769.548522 eV Total energy + Delta-G solvation = -3468.247217 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.28954 -39.46414 -39.02469 -38.18508 -36.74427 -35.02081 -34.21915 -31.67373 -29.77790 -28.96440 -27.56556 -25.84482 -24.29556 -23.40748 -23.19344 -21.93871 -20.94636 -20.45857 -19.03309 -18.26296 -17.96348 -17.35989 -16.77304 -16.38986 -16.27246 -15.90568 -15.70546 -15.46445 -15.15242 -14.88526 -14.77068 -14.46510 -14.31466 -13.92388 -13.79574 -13.10082 -13.08538 -12.95913 -12.70088 -12.58425 -12.31821 -12.28537 -12.13071 -11.92876 -11.72682 -11.58553 -11.42461 -11.31994 -11.05685 -10.92178 -10.76867 -10.46126 -10.30782 -10.23975 -8.29826 -6.36107 0.81513 1.31601 1.38301 1.39053 1.47153 2.17076 2.32387 2.37587 3.05864 3.10882 3.17529 3.65668 3.79780 3.98082 4.03787 4.07501 4.16481 4.33334 4.34702 4.41292 4.53943 4.63791 4.67131 4.74680 4.78669 4.81079 4.83726 4.86736 4.89162 5.01619 5.06744 5.23141 5.24357 5.28408 5.28849 5.31941 5.44806 5.56084 5.59058 5.68475 5.92796 6.26038 6.26885 6.61929 6.69426 7.26804 7.35183 8.85223 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.005358 C = 0.004768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.499817 B = 5224.782402 C = 5871.629697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.082 4.082 4 H 0.081 0.919 5 C -0.144 4.144 6 C -0.104 4.104 7 C 0.105 3.895 8 H 0.129 0.871 9 N -0.704 5.704 10 C 0.703 3.297 11 O -0.580 6.580 12 N -0.557 5.557 13 C 0.153 3.847 14 C -0.048 4.048 15 C -0.474 4.474 16 H 0.023 0.977 17 C 0.041 3.959 18 N -0.940 5.940 19 Si 0.932 3.068 20 H -0.270 1.270 21 H -0.306 1.306 22 H -0.234 1.234 23 C -0.157 4.157 24 C -0.185 4.185 25 C 0.522 3.478 26 O -0.498 6.498 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.448 0.552 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.263 0.737 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 10.683 -9.234 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.101 4.101 4 H 0.099 0.901 5 C -0.201 4.201 6 C -0.143 4.143 7 C -0.004 4.004 8 H 0.146 0.854 9 N -0.370 5.370 10 C 0.404 3.596 11 O -0.457 6.457 12 N -0.300 5.300 13 C 0.031 3.969 14 C -0.050 4.050 15 C -0.512 4.512 16 H 0.041 0.959 17 C -0.158 4.158 18 N -0.579 5.579 19 Si 0.758 3.242 20 H -0.196 1.196 21 H -0.234 1.234 22 H -0.157 1.157 23 C -0.194 4.194 24 C -0.222 4.222 25 C 0.310 3.690 26 O -0.370 6.370 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.295 0.705 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.566 10.597 -9.148 17.539 hybrid contribution 0.573 -0.723 0.162 0.937 sum -9.993 9.874 -8.986 16.676 Atomic orbital electron populations 1.21787 0.94827 1.01754 1.02373 1.21715 0.96868 0.96056 1.02077 1.21112 0.92209 0.96820 0.99957 0.90074 1.21830 1.02046 1.00233 0.96016 1.21861 0.98301 1.02229 0.91894 1.22156 0.89578 0.97388 0.91249 0.85393 1.45331 1.08132 1.49748 1.33776 1.15944 0.81549 0.80215 0.81868 1.90905 1.86125 1.39797 1.28843 1.46054 1.08860 1.43988 1.31100 1.21360 0.79876 0.98714 0.96924 1.19717 0.99388 0.94778 0.91078 1.20032 1.01339 0.91270 1.38551 0.95887 1.25591 1.01576 0.94207 0.94457 1.69997 1.38965 1.03784 1.45148 0.86007 0.80625 0.80346 0.77208 1.19562 1.23431 1.15692 1.22814 1.00279 1.00034 0.96290 1.23007 0.90958 1.02567 1.05679 1.21242 0.92168 0.76680 0.78915 1.90721 1.55814 1.41819 1.48611 0.91681 0.93019 0.92413 0.91764 0.92706 0.91231 0.92433 0.92499 0.89452 0.90348 0.70459 0.90081 0.88653 0.92850 0.88320 0.91057 0.90553 0.87334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 71.98 0.70 -1.31 16 2 C -0.13 -2.07 5.29 30.59 0.16 -1.91 16 3 C -0.08 -1.23 2.34 -10.80 -0.03 -1.26 16 4 H 0.08 1.08 7.18 -2.39 -0.02 1.06 16 5 C -0.14 -1.79 8.80 71.98 0.63 -1.16 16 6 C -0.10 -2.12 4.44 30.60 0.14 -1.99 16 7 C 0.10 2.94 3.49 44.37 0.15 3.09 16 8 H 0.13 3.58 6.45 -2.39 -0.02 3.56 16 9 N -0.70 -19.00 5.94 -459.60 -2.73 -21.73 16 10 C 0.70 25.86 8.62 179.44 1.55 27.41 16 11 O -0.58 -24.05 17.56 -3.83 -0.07 -24.12 16 12 N -0.56 -22.28 2.12 -773.13 -1.64 -23.91 16 13 C 0.15 6.28 5.63 86.38 0.49 6.77 16 14 C -0.05 -2.21 1.21 -52.93 -0.06 -2.28 16 15 C -0.47 -26.80 8.26 25.60 0.21 -26.59 16 16 H 0.02 1.48 8.06 -2.91 -0.02 1.46 16 17 C 0.04 2.36 5.47 84.65 0.46 2.83 16 18 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 19 Si 0.93 46.07 24.95 68.60 1.71 47.78 16 20 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 22 H -0.23 -10.46 5.45 99.48 0.54 -9.92 16 23 C -0.16 -6.48 9.88 30.60 0.30 -6.18 16 24 C -0.18 -7.48 7.40 30.60 0.23 -7.26 16 25 C 0.52 20.59 7.02 87.94 0.62 21.20 16 26 O -0.50 -23.19 17.68 -2.90 -0.05 -23.24 16 27 H 0.06 0.74 6.69 -2.39 -0.02 0.72 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 1.01 6.35 -2.39 -0.02 1.00 16 32 H 0.07 0.73 6.85 -2.39 -0.02 0.71 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.45 8.97 8.26 -92.71 -0.77 8.20 16 38 H 0.08 3.36 6.47 -2.38 -0.02 3.35 16 39 H 0.10 3.43 7.79 -2.39 -0.02 3.41 16 40 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 41 H 0.10 3.65 8.08 -2.39 -0.02 3.63 16 42 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 43 H 0.08 3.30 6.93 -2.39 -0.02 3.28 16 44 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 Total: -1.00 -73.35 350.10 3.15 -70.20 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.07 Total: 22.40 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.55 Total: 11.37 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -4.07 Total: -104.39 kcal Atomic # 8 Polarization: -47.25 SS G_CDS: -0.12 Total: -47.37 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.71 Total: 47.78 kcal Total: -73.35 3.15 -70.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592458417.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.919 kcal (2) G-P(sol) polarization free energy of solvation -73.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds