Wall clock time and date at job start Tue Mar 31 2020 07:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46902 * 2 1 4 4 H 1.08994 * 109.46821 * 55.00778 * 3 2 1 5 5 C 1.52997 * 109.47347 * 294.99925 * 3 2 1 6 6 C 1.53006 * 109.46887 * 175.00063 * 3 2 1 7 7 C 1.52992 * 109.47158 * 185.00266 * 6 3 2 8 8 H 1.09007 * 110.53518 * 307.83140 * 7 6 3 9 9 N 1.47310 * 110.60182 * 70.82579 * 7 6 3 10 10 C 1.34533 * 106.61875 * 118.30335 * 9 7 6 11 11 O 1.21533 * 123.77047 * 180.20961 * 10 9 7 12 12 N 1.33795 * 112.45548 * 0.38663 * 10 9 7 13 13 C 1.46499 * 124.17505 * 179.86103 * 12 10 9 14 14 C 1.52998 * 109.47048 * 270.12780 * 13 12 10 15 15 C 1.50705 * 115.54805 * 174.43991 * 14 13 12 16 16 H 1.07998 * 120.00079 * 219.73402 * 15 14 13 17 17 C 1.37870 * 119.99928 * 39.73970 * 15 14 13 18 18 N 1.31522 * 120.00196 * 9.31786 * 17 15 14 19 19 Si 1.86801 * 120.00126 * 189.32321 * 17 15 14 20 20 H 1.48503 * 109.47338 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.46938 * 299.99760 * 19 17 15 22 22 H 1.48496 * 109.46999 * 59.99530 * 19 17 15 23 23 C 1.52994 * 117.52134 * 320.14255 * 14 13 12 24 24 C 1.52991 * 60.00193 * 107.48110 * 23 14 13 25 25 C 1.34766 * 111.64315 * 359.59373 * 12 10 9 26 26 O 1.21234 * 127.15539 * 180.19162 * 25 12 10 27 27 H 1.09003 * 109.47112 * 59.99998 * 1 2 3 28 28 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47075 * 299.99317 * 1 2 3 30 30 H 1.09006 * 109.46629 * 240.00488 * 2 1 3 31 31 H 1.09002 * 109.47369 * 120.00488 * 2 1 3 32 32 H 1.09002 * 109.47269 * 300.00471 * 5 3 2 33 33 H 1.09000 * 109.46741 * 60.00474 * 5 3 2 34 34 H 1.09001 * 109.47049 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46687 * 65.00315 * 6 3 2 36 36 H 1.09002 * 109.47256 * 305.00704 * 6 3 2 37 37 H 0.96999 * 126.68900 * 298.50044 * 9 7 6 38 38 H 1.09002 * 109.46862 * 150.13114 * 13 12 10 39 39 H 1.09002 * 109.47091 * 30.13003 * 13 12 10 40 40 H 0.97001 * 119.99572 * 174.98668 * 18 17 15 41 41 H 1.09004 * 117.50100 * 214.97337 * 23 14 13 42 42 H 1.09007 * 117.50009 * 359.97438 * 23 14 13 43 43 H 1.08997 * 117.50189 * 252.50948 * 24 23 14 44 44 H 1.09002 * 117.51540 * 107.48328 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8849 0.2512 8 1 3.6659 3.4996 -0.5560 9 7 3.7006 3.4474 1.5632 10 6 4.8544 3.7441 2.1880 11 8 4.9149 4.2258 3.3022 12 7 5.9279 3.4533 1.4442 13 6 7.3110 3.6753 1.8731 14 6 7.7555 5.0784 1.4554 15 6 9.1171 5.5011 1.9437 16 1 9.2783 6.5131 2.2847 17 6 10.1570 4.5960 1.9550 18 7 10.0157 3.4246 1.3738 19 14 11.7668 5.0331 2.7958 20 1 12.7160 3.8982 2.6686 21 1 12.3484 6.2397 2.1547 22 1 11.5154 5.3089 4.2332 23 6 7.3107 5.5809 0.0805 24 6 6.6770 6.1583 1.3476 25 6 5.5797 2.9255 0.2540 26 8 6.3237 2.5600 -0.6306 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1253 -1.3968 34 1 1.9981 3.1544 -1.3071 35 1 4.0029 0.9836 -0.7597 36 1 3.8571 0.8799 1.0112 37 1 2.8039 3.5757 1.9101 38 1 7.9597 2.9345 1.4057 39 1 7.3746 3.5816 2.9573 40 1 10.7696 2.8168 1.3180 41 1 8.0029 6.2171 -0.4710 42 1 6.7015 4.9116 -0.5271 43 1 5.6508 5.8691 1.5739 44 1 6.9522 7.1744 1.6302 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592458418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:23 Heat of formation + Delta-G solvation = -32.953642 kcal Electronic energy + Delta-G solvation = -24905.743192 eV Core-core repulsion = 21438.420865 eV Total energy + Delta-G solvation = -3467.322327 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.05310 -38.09621 -37.73594 -36.52029 -35.47710 -33.47243 -32.15948 -31.05408 -28.43497 -27.12600 -25.84687 -25.27570 -23.24394 -21.92716 -21.02581 -20.57872 -20.01348 -18.76465 -17.49470 -17.04585 -16.31976 -15.82332 -15.44114 -15.05238 -15.02208 -14.84279 -14.35262 -14.06096 -13.72625 -13.60424 -13.54693 -12.98456 -12.67991 -12.36736 -12.23152 -12.05493 -11.94501 -11.55365 -11.45524 -11.08007 -10.96251 -10.87139 -10.81293 -10.78199 -10.49153 -10.34025 -10.17974 -10.02522 -9.63355 -9.24439 -9.07644 -8.89175 -8.56502 -8.05461 -6.10653 -4.14051 2.10319 2.79248 3.29061 3.34207 3.37581 3.49211 3.56488 4.25485 4.35361 4.42457 4.57884 4.70951 4.84174 4.98400 5.01690 5.12839 5.26728 5.28890 5.45962 5.50730 5.58302 5.66713 5.73186 5.74645 5.80796 5.83372 5.90563 6.07648 6.13373 6.14406 6.26336 6.43201 6.44852 6.71757 6.78623 6.99465 7.05408 7.11477 7.35063 7.49174 7.73229 7.89283 7.94796 8.33166 8.62871 8.83087 9.46130 10.93646 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.003902 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.401826 B = 7174.745580 C = 7347.868833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.090 4.090 4 H 0.071 0.929 5 C -0.155 4.155 6 C -0.115 4.115 7 C 0.089 3.911 8 H 0.121 0.879 9 N -0.733 5.733 10 C 0.698 3.302 11 O -0.543 6.543 12 N -0.566 5.566 13 C 0.150 3.850 14 C 0.046 3.954 15 C -0.488 4.488 16 H 0.065 0.935 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.901 3.099 20 H -0.285 1.285 21 H -0.276 1.276 22 H -0.274 1.274 23 C -0.199 4.199 24 C -0.206 4.206 25 C 0.520 3.480 26 O -0.460 6.460 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.431 0.569 38 H 0.136 0.864 39 H 0.078 0.922 40 H 0.266 0.734 41 H 0.078 0.922 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.606 -6.488 -4.120 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.108 4.108 4 H 0.090 0.910 5 C -0.212 4.212 6 C -0.153 4.153 7 C -0.020 4.020 8 H 0.138 0.862 9 N -0.399 5.399 10 C 0.399 3.601 11 O -0.417 6.417 12 N -0.311 5.311 13 C 0.032 3.968 14 C 0.045 3.955 15 C -0.526 4.526 16 H 0.083 0.917 17 C -0.135 4.135 18 N -0.520 5.520 19 Si 0.728 3.272 20 H -0.211 1.211 21 H -0.202 1.202 22 H -0.199 1.199 23 C -0.237 4.237 24 C -0.243 4.243 25 C 0.306 3.694 26 O -0.329 6.329 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.275 0.725 38 H 0.154 0.846 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.096 0.904 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.899 -6.628 -3.956 18.579 hybrid contribution 0.362 0.425 0.428 0.703 sum -16.538 -6.203 -3.529 18.012 Atomic orbital electron populations 1.21820 0.95858 1.01515 1.01885 1.21563 0.95871 0.95988 1.02309 1.21145 0.94238 0.96732 0.98692 0.91046 1.21987 1.01463 1.00622 0.97104 1.21868 0.96006 0.93305 1.04138 1.22168 0.93897 0.97754 0.88192 0.86166 1.45582 1.07978 1.68448 1.17879 1.16029 0.81165 0.78526 0.84351 1.90982 1.85529 1.47584 1.17556 1.46852 1.10262 1.56813 1.17123 1.21872 0.73700 1.00746 1.00511 1.19220 0.93012 0.89060 0.94184 1.20457 0.92048 0.97263 1.42817 0.91668 1.25037 0.99065 0.94794 0.94609 1.69742 1.31522 1.08778 1.41918 0.86499 0.82391 0.77951 0.80315 1.21098 1.20182 1.19932 1.22975 1.03921 1.04690 0.92141 1.22878 0.97354 0.99512 1.04580 1.20651 0.89999 0.76574 0.82223 1.90808 1.58798 1.45096 1.38217 0.92467 0.92917 0.92798 0.91727 0.91871 0.92212 0.92297 0.92439 0.89299 0.90595 0.72542 0.84639 0.90316 0.92337 0.90377 0.91955 0.91804 0.90606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.67 37.16 0.36 -0.60 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -0.99 16 3 C -0.09 -0.68 2.36 -90.62 -0.21 -0.89 16 4 H 0.07 0.51 7.51 -51.93 -0.39 0.12 16 5 C -0.15 -1.08 8.72 37.16 0.32 -0.76 16 6 C -0.11 -1.14 4.43 -26.73 -0.12 -1.26 16 7 C 0.09 1.11 3.52 -68.21 -0.24 0.87 16 8 H 0.12 1.29 6.32 -51.92 -0.33 0.96 16 9 N -0.73 -9.56 6.03 -59.19 -0.36 -9.92 16 10 C 0.70 13.01 6.75 -88.01 -0.59 12.41 16 11 O -0.54 -11.95 17.20 5.34 0.09 -11.86 16 12 N -0.57 -11.46 1.84 -120.73 -0.22 -11.68 16 13 C 0.15 3.65 5.15 -4.04 -0.02 3.63 16 14 C 0.05 1.19 2.31 -155.66 -0.36 0.83 16 15 C -0.49 -13.49 9.02 -34.44 -0.31 -13.80 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 17 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 18 N -0.88 -24.43 10.93 55.43 0.61 -23.82 16 19 Si 0.90 20.95 29.55 -169.99 -5.02 15.93 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.20 -4.80 9.63 -26.74 -0.26 -5.06 16 24 C -0.21 -4.81 9.56 -26.74 -0.26 -5.07 16 25 C 0.52 9.47 6.07 -10.56 -0.06 9.41 16 26 O -0.46 -9.74 17.02 5.60 0.10 -9.65 16 27 H 0.06 0.34 6.57 -51.93 -0.34 0.00 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.36 6.56 -51.93 -0.34 0.02 16 34 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.43 4.30 8.51 -40.82 -0.35 3.95 16 38 H 0.14 3.59 5.92 -51.93 -0.31 3.28 16 39 H 0.08 1.98 7.86 -51.93 -0.41 1.58 16 40 H 0.27 7.04 8.32 -40.82 -0.34 6.70 16 41 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 42 H 0.06 1.45 5.61 -51.92 -0.29 1.16 16 43 H 0.06 1.43 5.62 -51.93 -0.29 1.14 16 44 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -31.14 348.09 -8.28 -39.42 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.73 Total: 5.87 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -1.99 Total: 0.47 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.03 Total: -45.42 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: 0.19 Total: -21.51 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.14 -8.28 -39.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592458418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.466 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds