Wall clock time and date at job start Tue Mar 31 2020 07:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46902 * 2 1 4 4 H 1.08994 * 109.46821 * 55.00778 * 3 2 1 5 5 C 1.52997 * 109.47347 * 294.99925 * 3 2 1 6 6 C 1.53006 * 109.46887 * 175.00063 * 3 2 1 7 7 C 1.52992 * 109.47158 * 185.00266 * 6 3 2 8 8 H 1.09007 * 110.53518 * 307.83140 * 7 6 3 9 9 N 1.47310 * 110.60182 * 70.82579 * 7 6 3 10 10 C 1.34533 * 106.61875 * 118.30335 * 9 7 6 11 11 O 1.21533 * 123.77047 * 180.20961 * 10 9 7 12 12 N 1.33795 * 112.45548 * 0.38663 * 10 9 7 13 13 C 1.46499 * 124.17505 * 179.86103 * 12 10 9 14 14 C 1.52998 * 109.47048 * 270.12780 * 13 12 10 15 15 C 1.50705 * 115.54805 * 174.43991 * 14 13 12 16 16 H 1.07998 * 120.00079 * 219.73402 * 15 14 13 17 17 C 1.37870 * 119.99928 * 39.73970 * 15 14 13 18 18 N 1.31522 * 120.00196 * 9.31786 * 17 15 14 19 19 Si 1.86801 * 120.00126 * 189.32321 * 17 15 14 20 20 H 1.48503 * 109.47338 * 179.97438 * 19 17 15 21 21 H 1.48503 * 109.46938 * 299.99760 * 19 17 15 22 22 H 1.48496 * 109.46999 * 59.99530 * 19 17 15 23 23 C 1.52994 * 117.52134 * 320.14255 * 14 13 12 24 24 C 1.52991 * 60.00193 * 107.48110 * 23 14 13 25 25 C 1.34766 * 111.64315 * 359.59373 * 12 10 9 26 26 O 1.21234 * 127.15539 * 180.19162 * 25 12 10 27 27 H 1.09003 * 109.47112 * 59.99998 * 1 2 3 28 28 H 1.09001 * 109.46865 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47075 * 299.99317 * 1 2 3 30 30 H 1.09006 * 109.46629 * 240.00488 * 2 1 3 31 31 H 1.09002 * 109.47369 * 120.00488 * 2 1 3 32 32 H 1.09002 * 109.47269 * 300.00471 * 5 3 2 33 33 H 1.09000 * 109.46741 * 60.00474 * 5 3 2 34 34 H 1.09001 * 109.47049 * 179.97438 * 5 3 2 35 35 H 1.09001 * 109.46687 * 65.00315 * 6 3 2 36 36 H 1.09002 * 109.47256 * 305.00704 * 6 3 2 37 37 H 0.96999 * 126.68900 * 298.50044 * 9 7 6 38 38 H 1.09002 * 109.46862 * 150.13114 * 13 12 10 39 39 H 1.09002 * 109.47091 * 30.13003 * 13 12 10 40 40 H 0.97001 * 119.99572 * 174.98668 * 18 17 15 41 41 H 1.09004 * 117.50100 * 214.97337 * 23 14 13 42 42 H 1.09007 * 117.50009 * 359.97438 * 23 14 13 43 43 H 1.08997 * 117.50189 * 252.50948 * 24 23 14 44 44 H 1.09002 * 117.51540 * 107.48328 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5648 1.4443 0.1257 7 6 4.0645 2.8849 0.2512 8 1 3.6659 3.4996 -0.5560 9 7 3.7006 3.4474 1.5632 10 6 4.8544 3.7441 2.1880 11 8 4.9149 4.2258 3.3022 12 7 5.9279 3.4533 1.4442 13 6 7.3110 3.6753 1.8731 14 6 7.7555 5.0784 1.4554 15 6 9.1171 5.5011 1.9437 16 1 9.2783 6.5131 2.2847 17 6 10.1570 4.5960 1.9550 18 7 10.0157 3.4246 1.3738 19 14 11.7668 5.0331 2.7958 20 1 12.7160 3.8982 2.6686 21 1 12.3484 6.2397 2.1547 22 1 11.5154 5.3089 4.2332 23 6 7.3107 5.5809 0.0805 24 6 6.6770 6.1583 1.3476 25 6 5.5797 2.9255 0.2540 26 8 6.3237 2.5600 -0.6306 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0698 1.5875 -2.1492 33 1 0.5489 2.1253 -1.3968 34 1 1.9981 3.1544 -1.3071 35 1 4.0029 0.9836 -0.7597 36 1 3.8571 0.8799 1.0112 37 1 2.8039 3.5757 1.9101 38 1 7.9597 2.9345 1.4057 39 1 7.3746 3.5816 2.9573 40 1 10.7696 2.8168 1.3180 41 1 8.0029 6.2171 -0.4710 42 1 6.7015 4.9116 -0.5271 43 1 5.6508 5.8691 1.5739 44 1 6.9522 7.1744 1.6302 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592458418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:22 Heat of formation + Delta-G solvation = -51.994762 kcal Electronic energy + Delta-G solvation = -24906.568877 eV Core-core repulsion = 21438.420865 eV Total energy + Delta-G solvation = -3468.148012 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.51044 -39.60408 -38.97532 -38.02481 -36.84850 -34.93158 -34.21043 -31.86959 -29.34815 -28.75624 -27.52109 -26.54343 -24.39022 -23.21810 -22.79934 -22.02925 -20.93484 -20.38143 -18.91372 -18.71695 -17.93502 -17.32464 -16.81972 -16.51262 -16.23668 -16.01111 -15.82662 -15.46121 -15.18719 -14.82583 -14.52954 -14.29391 -13.99251 -13.77331 -13.51632 -13.40218 -12.84511 -12.78897 -12.76515 -12.63865 -12.41246 -12.16539 -12.13844 -12.04154 -11.88571 -11.62814 -11.45705 -11.35631 -11.18855 -10.94469 -10.84186 -10.53510 -10.31973 -10.05656 -8.16247 -6.27875 0.65611 1.33553 1.43694 1.45756 1.53345 2.05034 2.24701 2.39434 2.93575 3.00650 3.50167 3.58102 3.80495 4.00629 4.06803 4.14690 4.24883 4.33296 4.43853 4.51083 4.54572 4.63314 4.68517 4.76559 4.80275 4.83456 4.86331 4.94888 4.99133 5.09692 5.19525 5.23105 5.25398 5.28649 5.30163 5.41895 5.50154 5.57665 5.61592 5.77442 5.87139 6.24258 6.27101 6.50173 6.71933 7.19114 7.35412 8.86641 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029269 B = 0.003902 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.401826 B = 7174.745580 C = 7347.868833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.082 4.082 4 H 0.082 0.918 5 C -0.156 4.156 6 C -0.109 4.109 7 C 0.107 3.893 8 H 0.153 0.847 9 N -0.701 5.701 10 C 0.695 3.305 11 O -0.581 6.581 12 N -0.577 5.577 13 C 0.167 3.833 14 C 0.017 3.983 15 C -0.517 4.517 16 H 0.058 0.942 17 C 0.026 3.974 18 N -0.904 5.904 19 Si 0.964 3.036 20 H -0.279 1.279 21 H -0.272 1.272 22 H -0.271 1.271 23 C -0.192 4.192 24 C -0.186 4.186 25 C 0.510 3.490 26 O -0.495 6.495 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.451 0.549 38 H 0.110 0.890 39 H 0.057 0.943 40 H 0.268 0.732 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.570 -6.475 -4.590 21.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.101 4.101 4 H 0.100 0.900 5 C -0.213 4.213 6 C -0.147 4.147 7 C -0.001 4.001 8 H 0.170 0.830 9 N -0.367 5.367 10 C 0.396 3.604 11 O -0.457 6.457 12 N -0.321 5.321 13 C 0.046 3.954 14 C 0.016 3.984 15 C -0.554 4.554 16 H 0.076 0.924 17 C -0.175 4.175 18 N -0.542 5.542 19 Si 0.789 3.211 20 H -0.204 1.204 21 H -0.197 1.197 22 H -0.196 1.196 23 C -0.230 4.230 24 C -0.223 4.223 25 C 0.299 3.701 26 O -0.367 6.367 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.298 0.702 38 H 0.128 0.872 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.943 -6.624 -4.450 20.555 hybrid contribution 0.938 0.380 0.536 1.146 sum -18.005 -6.244 -3.914 19.454 Atomic orbital electron populations 1.21807 0.95007 1.01836 1.02273 1.21555 0.96570 0.95520 1.02114 1.21117 0.91929 0.97415 0.99621 0.90003 1.22009 1.02323 1.00490 0.96476 1.21892 0.97948 0.90937 1.03960 1.22292 0.89250 1.00144 0.88392 0.82952 1.45387 1.07271 1.66700 1.17376 1.16095 0.81957 0.78464 0.83866 1.90959 1.86137 1.49498 1.19154 1.46795 1.09407 1.57513 1.18404 1.21232 0.75887 0.99441 0.98793 1.19357 0.93292 0.90350 0.95450 1.20731 0.93588 0.97342 1.43778 0.92359 1.25764 1.02203 0.94650 0.94864 1.69883 1.32340 1.09423 1.42507 0.85517 0.78517 0.77874 0.79207 1.20413 1.19668 1.19591 1.22878 1.03798 1.04490 0.91840 1.22820 0.97217 0.98935 1.03321 1.21583 0.92479 0.75214 0.80871 1.90784 1.60476 1.46343 1.39084 0.91892 0.92732 0.92566 0.91783 0.92346 0.92370 0.91112 0.92239 0.89208 0.91251 0.70161 0.87213 0.92421 0.92296 0.91091 0.91310 0.90719 0.90323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 71.98 0.70 -0.79 16 2 C -0.12 -1.40 5.40 30.59 0.17 -1.23 16 3 C -0.08 -0.98 2.36 -10.79 -0.03 -1.00 16 4 H 0.08 0.84 7.51 -2.39 -0.02 0.82 16 5 C -0.16 -1.63 8.72 71.98 0.63 -1.01 16 6 C -0.11 -1.91 4.43 30.59 0.14 -1.78 16 7 C 0.11 2.42 3.52 44.37 0.16 2.58 16 8 H 0.15 2.67 6.32 -2.38 -0.02 2.66 16 9 N -0.70 -16.50 6.03 -459.61 -2.77 -19.27 16 10 C 0.70 25.32 6.75 179.44 1.21 26.53 16 11 O -0.58 -25.46 17.20 -3.82 -0.07 -25.53 16 12 N -0.58 -23.46 1.84 -773.12 -1.43 -24.89 16 13 C 0.17 8.40 5.15 86.38 0.45 8.85 16 14 C 0.02 0.88 2.31 -52.93 -0.12 0.75 16 15 C -0.52 -29.18 9.02 25.60 0.23 -28.95 16 16 H 0.06 3.26 7.83 -2.91 -0.02 3.24 16 17 C 0.03 1.44 5.27 84.65 0.45 1.88 16 18 N -0.90 -51.28 10.93 21.45 0.23 -51.05 16 19 Si 0.96 43.45 29.55 68.60 2.03 45.47 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 C -0.19 -9.30 9.63 30.59 0.29 -9.00 16 24 C -0.19 -8.63 9.56 30.59 0.29 -8.33 16 25 C 0.51 18.30 6.07 87.94 0.53 18.84 16 26 O -0.50 -21.13 17.02 -2.89 -0.05 -21.18 16 27 H 0.06 0.55 6.57 -2.39 -0.02 0.53 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.61 6.56 -2.39 -0.02 0.59 16 34 H 0.06 0.61 6.43 -2.39 -0.02 0.59 16 35 H 0.09 1.64 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.45 7.40 8.51 -92.71 -0.79 6.61 16 38 H 0.11 6.09 5.92 -2.39 -0.01 6.07 16 39 H 0.06 3.05 7.86 -2.39 -0.02 3.03 16 40 H 0.27 14.41 8.32 -92.71 -0.77 13.64 16 41 H 0.07 3.49 8.14 -2.38 -0.02 3.47 16 42 H 0.07 3.20 5.61 -2.38 -0.01 3.19 16 43 H 0.07 3.28 5.62 -2.39 -0.01 3.27 16 44 H 0.08 3.58 8.14 -2.39 -0.02 3.56 16 Total: -1.00 -69.03 348.09 3.26 -65.77 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: 0.22 Total: 23.34 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.09 Total: 7.33 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -3.96 Total: -95.21 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -0.11 Total: -46.71 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -69.03 3.26 -65.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592458418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.776 kcal (2) G-P(sol) polarization free energy of solvation -69.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds