Wall clock time and date at job start Tue Mar 31 2020 07:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99891 * 2 1 4 4 H 1.09004 * 109.86457 * 358.99338 * 3 2 1 5 5 O 1.43740 * 109.87613 * 237.83430 * 3 2 1 6 6 C 1.44378 * 106.97368 * 214.06067 * 5 3 2 7 7 C 1.54995 * 103.49015 * 40.06340 * 6 5 3 8 8 C 1.54095 * 109.87998 * 120.00304 * 3 2 1 9 9 H 1.09007 * 110.48446 * 2.77849 * 8 3 2 10 10 N 1.46498 * 110.60217 * 240.18818 * 8 3 2 11 11 C 1.34774 * 120.00229 * 158.71044 * 10 8 3 12 12 O 1.21591 * 119.99862 * 355.01749 * 11 10 8 13 13 N 1.34776 * 120.00244 * 175.01431 * 11 10 8 14 14 C 1.46924 * 120.62826 * 5.22499 * 13 11 10 15 15 C 1.53200 * 108.77263 * 126.36981 * 14 13 11 16 16 C 1.53035 * 109.31003 * 54.63856 * 15 14 13 17 17 C 1.53036 * 109.53780 * 298.63215 * 16 15 14 18 18 H 1.09002 * 109.49886 * 301.38487 * 17 16 15 19 19 C 1.50702 * 109.49932 * 181.32197 * 17 16 15 20 20 H 1.07997 * 119.99884 * 359.97438 * 19 17 16 21 21 C 1.37872 * 120.00332 * 180.02562 * 19 17 16 22 22 N 1.31519 * 120.00013 * 359.97438 * 21 19 17 23 23 Si 1.86803 * 120.00257 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46963 * 60.00256 * 23 21 19 25 25 H 1.48500 * 109.47036 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.46975 * 299.99777 * 23 21 19 27 27 C 1.46926 * 120.63206 * 184.94975 * 13 11 10 28 28 H 1.08005 * 119.99880 * 180.02562 * 1 2 3 29 29 H 1.07997 * 120.00192 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00192 * 180.02562 * 2 1 3 31 31 H 1.09003 * 110.62074 * 281.56037 * 6 5 3 32 32 H 1.08997 * 110.61894 * 158.56524 * 6 5 3 33 33 H 1.09002 * 110.90690 * 204.77787 * 7 6 5 34 34 H 1.08994 * 110.90867 * 81.17417 * 7 6 5 35 35 H 0.97004 * 119.99664 * 338.71206 * 10 8 3 36 36 H 1.09001 * 109.59247 * 246.15416 * 14 13 11 37 37 H 1.08999 * 109.58699 * 6.44668 * 14 13 11 38 38 H 1.09005 * 109.49338 * 174.59006 * 15 14 13 39 39 H 1.08998 * 109.49945 * 294.64913 * 15 14 13 40 40 H 1.08998 * 109.46295 * 58.65298 * 16 15 14 41 41 H 1.09005 * 109.45526 * 178.61604 * 16 15 14 42 42 H 0.96992 * 120.00238 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.58604 * 353.41754 * 27 13 11 44 44 H 1.09004 * 109.58480 * 113.84638 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3610 2.1384 -0.0180 5 8 2.9311 1.3686 -1.1443 6 6 4.1110 2.0951 -0.7389 7 6 4.3852 1.5692 0.6931 8 6 2.9530 1.3966 1.2549 9 1 2.8810 0.4805 1.8412 10 7 2.5784 2.5556 2.0689 11 6 2.9046 2.5948 3.3760 12 8 3.4287 1.6314 3.9010 13 7 2.6498 3.7019 4.1013 14 6 1.9153 4.8299 3.5124 15 6 0.7269 5.1706 4.4172 16 6 1.2302 5.4226 5.8403 17 6 1.8994 4.1558 6.3783 18 1 1.1844 3.3331 6.3654 19 6 2.3658 4.3946 7.7913 20 1 2.2020 5.3541 8.2591 21 6 3.0027 3.3885 8.4864 22 7 3.2026 2.2202 7.9166 23 14 3.5815 3.6848 10.2376 24 1 2.4170 4.0297 11.0922 25 1 4.2306 2.4552 10.7591 26 1 4.5565 4.8047 10.2538 27 6 3.0961 3.8013 5.4976 28 1 -0.5400 -0.9354 0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 3.9152 3.1672 -0.7231 32 1 4.9481 1.8665 -1.3985 33 1 4.9460 2.3004 1.2754 34 1 4.9090 0.6138 0.6630 35 1 2.0956 3.2948 1.6671 36 1 2.5745 5.6944 3.4342 37 1 1.5553 4.5540 2.5213 38 1 0.2298 6.0657 4.0432 39 1 0.0228 4.3385 4.4218 40 1 1.9526 6.2388 5.8308 41 1 0.3895 5.6892 6.4809 42 1 3.6510 1.5125 8.4054 43 1 3.5128 2.8461 5.8168 44 1 3.8537 4.5802 5.5845 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595642025.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:27 Heat of formation + Delta-G solvation = -49.315061 kcal Electronic energy + Delta-G solvation = -24646.857301 eV Core-core repulsion = 21178.825490 eV Total energy + Delta-G solvation = -3468.031812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37368 -39.12885 -36.80481 -34.42971 -33.91234 -33.27309 -31.82197 -30.56146 -29.67061 -27.98613 -25.07138 -24.46466 -23.04268 -21.87004 -21.58618 -20.43870 -19.80409 -18.73912 -17.66202 -16.69877 -16.55681 -16.11633 -15.38346 -15.19043 -14.76713 -14.50132 -14.10100 -13.82462 -13.70223 -13.58955 -13.18519 -12.84366 -12.64720 -12.46769 -12.34195 -11.98660 -11.84658 -11.43930 -11.27936 -11.17149 -10.96603 -10.87554 -10.52574 -10.41199 -10.22684 -10.00615 -9.87685 -9.69740 -9.45407 -9.09210 -8.95618 -8.79415 -8.40921 -7.66781 -5.96999 -4.06602 1.99799 3.09783 3.33364 3.39072 3.40231 3.76188 3.87150 4.35215 4.45941 4.50115 4.50491 4.74725 4.90639 5.04140 5.14073 5.22790 5.30665 5.32676 5.47383 5.53627 5.58561 5.64353 5.76923 5.90420 5.94381 5.99360 6.14550 6.30289 6.39099 6.47963 6.56365 6.58764 6.65814 6.78741 6.84843 6.98663 7.02661 7.34468 7.48085 7.74427 7.93381 8.07135 8.41779 8.54850 8.96877 9.21993 9.58980 11.07833 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.003859 C = 0.003694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.523482 B = 7254.600359 C = 7577.659499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.151 4.151 3 C 0.101 3.899 4 H 0.075 0.925 5 O -0.368 6.368 6 C 0.045 3.955 7 C -0.166 4.166 8 C 0.140 3.860 9 H 0.106 0.894 10 N -0.749 5.749 11 C 0.701 3.299 12 O -0.579 6.579 13 N -0.621 5.621 14 C 0.115 3.885 15 C -0.133 4.133 16 C -0.110 4.110 17 C 0.039 3.961 18 H 0.028 0.972 19 C -0.523 4.523 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.879 5.879 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.128 3.872 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.390 0.610 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.264 0.736 43 H 0.124 0.876 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.480 1.427 -17.482 17.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.043 3.957 4 H 0.093 0.907 5 O -0.287 6.287 6 C -0.031 4.031 7 C -0.205 4.205 8 C 0.033 3.967 9 H 0.124 0.876 10 N -0.409 5.409 11 C 0.403 3.597 12 O -0.455 6.455 13 N -0.358 5.358 14 C -0.009 4.009 15 C -0.172 4.172 16 C -0.147 4.147 17 C 0.020 3.980 18 H 0.046 0.954 19 C -0.561 4.561 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.008 3.992 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.136 0.864 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.226 0.774 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.020 0.443 -17.225 17.349 hybrid contribution 0.093 0.669 0.959 1.173 sum -1.927 1.112 -16.266 16.417 Atomic orbital electron populations 1.23881 0.95639 1.02302 0.98960 1.22771 0.95800 0.97480 1.00921 1.22041 0.92100 0.96313 0.85282 0.90734 1.88937 1.30436 1.76441 1.32850 1.23608 0.88103 0.95925 0.95499 1.23582 0.97629 1.03116 0.96143 1.21982 0.92455 0.90975 0.91247 0.87636 1.45394 1.64077 1.22278 1.09154 1.15927 0.79647 0.83678 0.80477 1.90937 1.49579 1.34724 1.70282 1.47798 1.58384 1.14610 1.15008 1.21492 0.94029 0.89994 0.95361 1.21946 0.96979 1.00561 0.97690 1.21610 0.99604 1.00354 0.93155 1.18903 0.93292 0.92238 0.93581 0.95362 1.21031 1.38845 0.98799 0.97459 0.92449 1.25054 0.95773 0.95101 0.98053 1.69887 1.41550 1.03164 1.36980 0.86664 0.78944 0.77510 0.84914 1.20307 1.21265 1.20260 1.22112 0.97905 1.04693 0.74510 0.87723 0.88394 0.86444 0.92141 0.88779 0.89445 0.89658 0.77392 0.92137 0.92305 0.92323 0.92186 0.93202 0.93052 0.92600 0.85829 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 14.32 29.01 0.42 -1.24 16 2 C -0.15 -1.66 8.94 -36.02 -0.32 -1.98 16 3 C 0.10 1.15 3.58 -27.31 -0.10 1.06 16 4 H 0.07 0.78 7.27 -51.93 -0.38 0.41 16 5 O -0.37 -4.38 11.17 -35.23 -0.39 -4.77 16 6 C 0.05 0.45 7.72 38.21 0.29 0.74 16 7 C -0.17 -1.97 6.88 -24.73 -0.17 -2.14 16 8 C 0.14 1.88 3.00 -66.41 -0.20 1.69 16 9 H 0.11 1.66 7.15 -51.93 -0.37 1.29 16 10 N -0.75 -11.02 5.02 -57.18 -0.29 -11.31 16 11 C 0.70 14.09 8.29 -86.92 -0.72 13.37 16 12 O -0.58 -14.37 15.44 5.29 0.08 -14.29 16 13 N -0.62 -12.37 2.98 -178.76 -0.53 -12.90 16 14 C 0.12 1.74 6.39 -3.71 -0.02 1.72 16 15 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 16 C -0.11 -2.16 5.11 -26.69 -0.14 -2.29 16 17 C 0.04 0.97 2.24 -91.88 -0.21 0.76 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 19 C -0.52 -14.16 8.56 -34.44 -0.29 -14.45 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 22 N -0.88 -25.77 11.39 55.43 0.63 -25.14 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.13 3.11 5.39 -3.93 -0.02 3.09 16 28 H 0.10 0.86 8.06 -52.48 -0.42 0.44 16 29 H 0.10 0.87 7.85 -52.49 -0.41 0.46 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.14 8.06 -51.93 -0.42 0.72 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.39 4.68 5.78 -40.82 -0.24 4.44 16 36 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.70 5.64 -51.93 -0.29 0.40 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.12 3.53 5.10 -51.93 -0.27 3.26 16 44 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -32.04 349.10 -8.99 -41.02 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.99 Total: 6.16 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -1.74 Total: -0.29 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: -0.19 Total: -49.34 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.31 Total: -19.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.04 -8.99 -41.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595642025.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.291 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds